Wall clock time and date at job start Sun Mar 29 2020 22:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 H 1.09003 * 110.76585 * 303.25750 * 3 2 1 5 5 C 1.55145 * 110.70544 * 66.45496 * 3 2 1 6 6 C 1.54902 * 101.65357 * 154.03639 * 5 3 2 7 7 N 1.47844 * 104.79472 * 322.92836 * 6 5 3 8 8 C 1.46904 * 110.99799 * 146.36272 * 7 6 5 9 9 C 1.53008 * 109.46698 * 69.87561 * 8 7 6 10 10 O 1.42897 * 109.46883 * 65.00444 * 9 8 7 11 11 C 1.42905 * 113.99899 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47179 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99854 * 179.72538 * 14 12 11 17 17 H 1.48498 * 109.47200 * 59.99994 * 16 14 12 18 18 H 1.48498 * 109.46671 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 300.00008 * 16 14 12 20 20 C 1.47439 * 108.56675 * 24.09929 * 7 6 5 21 21 H 1.09004 * 109.88722 * 239.60100 * 20 7 6 22 22 C 1.53007 * 109.89177 * 118.41510 * 20 7 6 23 23 H 1.09008 * 109.46663 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47250 * 299.99884 * 1 2 3 25 25 H 1.08998 * 109.47245 * 60.00045 * 1 2 3 26 26 H 1.09006 * 109.47142 * 240.00369 * 2 1 3 27 27 H 1.08993 * 109.47064 * 120.00368 * 2 1 3 28 28 H 1.09000 * 110.98945 * 35.93892 * 5 3 2 29 29 H 1.08999 * 110.98796 * 272.13004 * 5 3 2 30 30 H 1.09001 * 110.36972 * 204.10449 * 6 5 3 31 31 H 1.08996 * 110.37476 * 81.76009 * 6 5 3 32 32 H 1.08996 * 109.47411 * 309.87886 * 8 7 6 33 33 H 1.09003 * 109.47351 * 189.87210 * 8 7 6 34 34 H 1.08994 * 109.46995 * 305.00016 * 9 8 7 35 35 H 1.09003 * 109.46755 * 184.99525 * 9 8 7 36 36 H 1.08998 * 109.46937 * 59.99497 * 11 10 9 37 37 H 1.09002 * 109.46814 * 299.99307 * 11 10 9 38 38 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.46967 * 61.44995 * 22 20 7 40 40 H 1.08993 * 109.47006 * 181.45233 * 22 20 7 41 41 H 1.09003 * 109.46777 * 301.45217 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9932 -0.8523 5 6 1.6763 2.1529 1.3304 6 6 2.7839 3.2319 1.4220 7 7 3.9968 2.5739 0.8913 8 6 4.8499 3.5362 0.1813 9 6 5.4738 4.5046 1.1883 10 8 6.3540 3.7876 2.0561 11 6 6.9918 4.6038 3.0406 12 6 7.8912 3.7489 3.8958 13 1 7.9677 2.6884 3.7068 14 6 8.6164 4.3208 4.9196 15 7 8.5228 5.6123 5.1501 16 14 9.7253 3.2599 5.9846 17 1 10.7554 2.6113 5.1341 18 1 10.3901 4.1085 7.0059 19 1 8.9125 2.2166 6.6599 20 6 3.5828 1.4758 -0.0013 21 1 3.9745 0.5287 0.3697 22 6 4.0966 1.7355 -1.4189 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.7344 1.4613 2.1709 29 1 0.6889 2.6108 1.2712 30 1 2.9373 3.5311 2.4588 31 1 2.5230 4.0962 0.8113 32 1 4.2485 4.0952 -0.5356 33 1 5.6400 3.0015 -0.3460 34 1 4.6857 4.9741 1.7771 35 1 6.0350 5.2718 0.6549 36 1 6.2350 5.0749 3.6677 37 1 7.5844 5.3734 2.5459 38 1 9.0333 6.0146 5.8701 39 1 5.1860 1.7714 -1.4097 40 1 3.7650 0.9333 -2.0781 41 1 3.7047 2.6869 -1.7788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617360659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:07 Heat of formation + Delta-G solvation = -57.078506 kcal Electronic energy + Delta-G solvation = -17849.910079 eV Core-core repulsion = 15150.328143 eV Total energy + Delta-G solvation = -2699.581935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.72123 -36.57413 -34.53337 -32.63071 -31.53953 -30.64823 -27.78629 -26.39300 -25.67753 -22.73915 -22.46875 -22.06908 -20.27176 -19.14949 -16.36139 -15.99407 -15.66435 -15.46199 -14.84392 -14.59811 -14.22862 -13.97897 -13.64765 -13.24780 -13.09678 -12.51035 -12.42254 -12.17718 -12.01174 -11.70811 -11.50112 -11.33205 -11.14181 -10.90176 -10.76448 -10.72447 -10.63966 -10.48709 -10.36582 -10.23706 -9.88765 -9.01286 -8.70691 -8.04920 -7.92286 -6.03222 -4.03910 3.37741 3.39617 3.44321 4.14245 4.41826 4.48406 4.64337 4.74853 4.97863 5.11374 5.17316 5.27779 5.31864 5.33084 5.36826 5.42204 5.56504 5.62327 5.66953 5.71821 5.75430 5.81688 5.90626 5.98325 6.01802 6.09248 6.12444 6.14810 6.18867 6.27778 6.41830 6.45400 7.19794 7.29884 7.38861 7.53119 7.88735 8.25953 8.72235 9.11231 9.60652 11.08530 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.004443 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.283765 B = 6301.243393 C = 6525.011839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.072 0.928 5 C -0.123 4.123 6 C 0.042 3.958 7 N -0.508 5.508 8 C 0.053 3.947 9 C 0.067 3.933 10 O -0.380 6.380 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.066 0.934 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.908 3.092 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.072 3.928 21 H 0.085 0.915 22 C -0.169 4.169 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 -7.126 -12.228 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.091 0.909 5 C -0.161 4.161 6 C -0.086 4.086 7 N -0.232 5.232 8 C -0.075 4.075 9 C -0.011 4.011 10 O -0.299 6.299 11 C 0.120 3.880 12 C -0.548 4.548 13 H 0.084 0.916 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.735 3.265 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.036 4.036 21 H 0.103 0.897 22 C -0.227 4.227 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.530 -7.370 -11.701 20.058 hybrid contribution 0.109 0.360 -0.039 0.378 sum -14.421 -7.009 -11.739 19.872 Atomic orbital electron populations 1.21774 0.95990 1.01347 1.01743 1.21488 0.95651 0.95748 1.02140 1.22525 0.95504 0.96457 0.98034 0.90949 1.22765 0.97937 0.97949 0.97470 1.23086 0.88876 0.95509 1.01130 1.63647 1.15911 1.09863 1.33814 1.22446 0.96424 0.93937 0.94726 1.22241 0.93074 0.93376 0.92399 1.87943 1.59628 1.35951 1.46383 1.20157 0.91352 0.90891 0.85611 1.21043 1.24367 0.95563 1.13847 0.91577 1.24949 0.97131 0.95190 0.97304 1.69962 1.42125 1.10329 1.31685 0.86405 0.80433 0.79951 0.79729 1.20060 1.21248 1.20013 1.22516 0.93140 0.96589 0.91400 0.89693 1.22394 1.02149 1.01408 0.96781 0.92963 0.92560 0.93060 0.92110 0.91538 0.90542 0.91312 0.90015 0.94182 0.94313 0.89663 0.94872 0.94585 0.97994 0.98107 0.92727 0.91401 0.92526 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.76 37.16 0.36 -0.83 16 2 C -0.11 -1.02 5.29 -26.73 -0.14 -1.16 16 3 C -0.11 -1.11 2.50 -88.80 -0.22 -1.33 16 4 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 5 C -0.12 -1.39 5.68 -24.59 -0.14 -1.53 16 6 C 0.04 0.58 5.75 -2.30 -0.01 0.57 16 7 N -0.51 -8.08 5.11 -223.35 -1.14 -9.22 16 8 C 0.05 0.84 4.08 -3.82 -0.02 0.82 16 9 C 0.07 1.32 6.08 37.16 0.23 1.55 16 10 O -0.38 -9.66 10.27 -35.23 -0.36 -10.02 16 11 C 0.19 5.56 5.69 36.00 0.20 5.77 16 12 C -0.51 -15.56 9.43 -34.44 -0.32 -15.88 16 13 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 14 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 16 Si 0.91 22.42 29.54 -169.99 -5.02 17.40 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.07 0.91 3.61 -66.73 -0.24 0.67 16 21 H 0.09 1.16 7.82 -51.93 -0.41 0.75 16 22 C -0.17 -1.87 7.83 37.16 0.29 -1.58 16 23 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 24 H 0.06 0.45 7.48 -51.93 -0.39 0.06 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.04 0.52 7.61 -51.93 -0.40 0.13 16 32 H 0.04 0.53 6.83 -51.93 -0.35 0.17 16 33 H 0.09 1.36 6.03 -51.93 -0.31 1.05 16 34 H 0.03 0.64 7.37 -51.93 -0.38 0.26 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.07 0.80 6.41 -51.93 -0.33 0.47 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.58 6.93 -51.93 -0.36 0.22 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -32.08 320.52 -8.59 -40.68 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -7.53 Total: -5.34 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.11 Total: -11.40 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.40 Total: -36.15 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.36 Total: -10.02 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.08 -8.59 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617360659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.403 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds