Wall clock time and date at job start Sun Mar 29 2020 22:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 H 1.09003 * 110.76585 * 303.25750 * 3 2 1 5 5 C 1.55145 * 110.70544 * 66.45496 * 3 2 1 6 6 C 1.54902 * 101.65357 * 154.03639 * 5 3 2 7 7 N 1.47844 * 104.79472 * 322.92836 * 6 5 3 8 8 C 1.46904 * 110.99799 * 146.36272 * 7 6 5 9 9 C 1.53008 * 109.46698 * 69.87561 * 8 7 6 10 10 O 1.42897 * 109.46883 * 65.00444 * 9 8 7 11 11 C 1.42905 * 113.99899 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47179 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99854 * 179.72538 * 14 12 11 17 17 H 1.48498 * 109.47200 * 59.99994 * 16 14 12 18 18 H 1.48498 * 109.46671 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 300.00008 * 16 14 12 20 20 C 1.47439 * 108.56675 * 24.09929 * 7 6 5 21 21 H 1.09004 * 109.88722 * 239.60100 * 20 7 6 22 22 C 1.53007 * 109.89177 * 118.41510 * 20 7 6 23 23 H 1.09008 * 109.46663 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47250 * 299.99884 * 1 2 3 25 25 H 1.08998 * 109.47245 * 60.00045 * 1 2 3 26 26 H 1.09006 * 109.47142 * 240.00369 * 2 1 3 27 27 H 1.08993 * 109.47064 * 120.00368 * 2 1 3 28 28 H 1.09000 * 110.98945 * 35.93892 * 5 3 2 29 29 H 1.08999 * 110.98796 * 272.13004 * 5 3 2 30 30 H 1.09001 * 110.36972 * 204.10449 * 6 5 3 31 31 H 1.08996 * 110.37476 * 81.76009 * 6 5 3 32 32 H 1.08996 * 109.47411 * 309.87886 * 8 7 6 33 33 H 1.09003 * 109.47351 * 189.87210 * 8 7 6 34 34 H 1.08994 * 109.46995 * 305.00016 * 9 8 7 35 35 H 1.09003 * 109.46755 * 184.99525 * 9 8 7 36 36 H 1.08998 * 109.46937 * 59.99497 * 11 10 9 37 37 H 1.09002 * 109.46814 * 299.99307 * 11 10 9 38 38 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.46967 * 61.44995 * 22 20 7 40 40 H 1.08993 * 109.47006 * 181.45233 * 22 20 7 41 41 H 1.09003 * 109.46777 * 301.45217 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9932 -0.8523 5 6 1.6763 2.1529 1.3304 6 6 2.7839 3.2319 1.4220 7 7 3.9968 2.5739 0.8913 8 6 4.8499 3.5362 0.1813 9 6 5.4738 4.5046 1.1883 10 8 6.3540 3.7876 2.0561 11 6 6.9918 4.6038 3.0406 12 6 7.8912 3.7489 3.8958 13 1 7.9677 2.6884 3.7068 14 6 8.6164 4.3208 4.9196 15 7 8.5228 5.6123 5.1501 16 14 9.7253 3.2599 5.9846 17 1 10.7554 2.6113 5.1341 18 1 10.3901 4.1085 7.0059 19 1 8.9125 2.2166 6.6599 20 6 3.5828 1.4758 -0.0013 21 1 3.9745 0.5287 0.3697 22 6 4.0966 1.7355 -1.4189 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.7344 1.4613 2.1709 29 1 0.6889 2.6108 1.2712 30 1 2.9373 3.5311 2.4588 31 1 2.5230 4.0962 0.8113 32 1 4.2485 4.0952 -0.5356 33 1 5.6400 3.0015 -0.3460 34 1 4.6857 4.9741 1.7771 35 1 6.0350 5.2718 0.6549 36 1 6.2350 5.0749 3.6677 37 1 7.5844 5.3734 2.5459 38 1 9.0333 6.0146 5.8701 39 1 5.1860 1.7714 -1.4097 40 1 3.7650 0.9333 -2.0781 41 1 3.7047 2.6869 -1.7788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617360659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:06 Heat of formation + Delta-G solvation = -78.178815 kcal Electronic energy + Delta-G solvation = -17850.825057 eV Core-core repulsion = 15150.328143 eV Total energy + Delta-G solvation = -2700.496913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78075 -38.43307 -35.62649 -34.81446 -32.51413 -31.84044 -29.54828 -28.08118 -26.55484 -24.51267 -23.80876 -23.42004 -21.16477 -20.29495 -18.60908 -17.48888 -17.11994 -16.74787 -16.40915 -16.00146 -15.52302 -15.39712 -14.95106 -14.48364 -14.27538 -13.83962 -13.55403 -13.32245 -13.20674 -13.04641 -12.87678 -12.76837 -12.63455 -12.46952 -12.17707 -11.99819 -11.88894 -11.63633 -11.47243 -11.41845 -11.25690 -11.23136 -10.84208 -10.18370 -9.07172 -8.31665 -6.44050 1.39278 1.44837 1.53191 2.35464 3.01627 3.02153 3.24839 3.60379 3.75779 3.85907 4.22239 4.23449 4.31419 4.38346 4.41531 4.45891 4.49609 4.54844 4.62970 4.68997 4.75281 4.77599 4.82188 4.91878 4.99154 5.01273 5.08292 5.17333 5.20462 5.22512 5.26924 5.32820 5.44030 5.55344 5.57080 5.97470 6.18557 6.24681 6.57315 6.86444 7.28255 8.80721 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034002 B = 0.004443 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.283765 B = 6301.243393 C = 6525.011839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.095 4.095 4 H 0.086 0.914 5 C -0.116 4.116 6 C 0.039 3.961 7 N -0.544 5.544 8 C 0.064 3.936 9 C 0.057 3.943 10 O -0.396 6.396 11 C 0.210 3.790 12 C -0.548 4.548 13 H 0.060 0.940 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.984 3.016 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.266 1.266 20 C 0.068 3.932 21 H 0.070 0.930 22 C -0.164 4.164 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.045 0.955 36 H -0.020 1.020 37 H -0.016 1.016 38 H 0.271 0.729 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 -8.172 -13.028 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.114 4.114 4 H 0.104 0.896 5 C -0.154 4.154 6 C -0.089 4.089 7 N -0.268 5.268 8 C -0.064 4.064 9 C -0.020 4.020 10 O -0.315 6.315 11 C 0.135 3.865 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.807 3.193 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.191 1.191 20 C -0.040 4.040 21 H 0.088 0.912 22 C -0.221 4.221 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.063 0.937 36 H -0.003 1.003 37 H 0.001 0.999 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.202 -8.416 -12.524 21.419 hybrid contribution 0.267 0.729 0.180 0.797 sum -14.935 -7.687 -12.344 20.845 Atomic orbital electron populations 1.21751 0.94810 1.01990 1.02037 1.21464 0.96610 0.94634 1.02067 1.22467 0.93635 0.97461 0.97819 0.89584 1.22732 0.97949 0.97020 0.97734 1.23064 0.89346 0.96847 0.99615 1.63500 1.17137 1.10763 1.35423 1.22345 0.96768 0.93585 0.93730 1.22613 0.92333 0.94703 0.92367 1.87899 1.60536 1.36580 1.46502 1.19778 0.90487 0.90473 0.85806 1.21358 1.26087 0.95577 1.15522 0.92222 1.25985 0.98275 0.96703 0.98263 1.70071 1.42686 1.12131 1.32244 0.85222 0.78220 0.78127 0.77758 1.18897 1.19771 1.19116 1.22549 0.94909 0.94718 0.91778 0.91227 1.22327 1.01333 1.02609 0.95871 0.92231 0.92767 0.92232 0.91224 0.92654 0.91574 0.89174 0.92869 0.92944 0.91155 0.89815 0.94989 0.93668 1.00254 0.99879 0.92025 0.92609 0.90516 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.76 71.98 0.70 -1.26 16 2 C -0.11 -1.77 5.29 30.60 0.16 -1.61 16 3 C -0.09 -1.79 2.50 -9.61 -0.02 -1.81 16 4 H 0.09 1.44 7.85 -2.39 -0.02 1.42 16 5 C -0.12 -2.48 5.68 31.98 0.18 -2.30 16 6 C 0.04 1.08 5.75 86.77 0.50 1.58 16 7 N -0.54 -17.17 5.11 -860.53 -4.39 -21.56 16 8 C 0.06 1.98 4.08 86.31 0.35 2.34 16 9 C 0.06 2.29 6.08 71.98 0.44 2.73 16 10 O -0.40 -20.82 10.27 -148.98 -1.53 -22.35 16 11 C 0.21 12.49 5.69 71.23 0.41 12.90 16 12 C -0.55 -34.25 9.43 25.60 0.24 -34.01 16 13 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 14 C 0.01 0.36 5.46 84.66 0.46 0.82 16 15 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 16 Si 0.98 45.80 29.54 68.60 2.03 47.83 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.07 1.66 3.61 45.26 0.16 1.83 16 21 H 0.07 1.89 7.82 -2.38 -0.02 1.87 16 22 C -0.16 -3.28 7.83 71.98 0.56 -2.71 16 23 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.05 0.74 7.48 -2.39 -0.02 0.72 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 28 H 0.07 1.54 8.02 -2.39 -0.02 1.52 16 29 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 31 H 0.05 1.30 7.61 -2.39 -0.02 1.28 16 32 H 0.07 1.76 6.83 -2.39 -0.02 1.74 16 33 H 0.08 2.64 6.03 -2.39 -0.01 2.62 16 34 H 0.03 1.28 7.37 -2.39 -0.02 1.26 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 37 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.05 1.25 6.41 -2.39 -0.02 1.24 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.16 6.93 -2.39 -0.02 1.14 16 Total: -1.00 -69.81 320.52 1.50 -68.31 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.96 Total: 6.75 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 4.15 Total: -21.51 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -4.11 Total: -79.03 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.53 Total: -22.35 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.81 1.50 -68.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617360659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.864 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds