Wall clock time and date at job start Sun Mar 29 2020 22:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47233 * 2 1 4 4 H 1.08996 * 110.62585 * 51.89875 * 3 2 1 5 5 C 1.55136 * 110.85368 * 288.68791 * 3 2 1 6 6 C 1.54908 * 101.65233 * 205.89125 * 5 3 2 7 7 N 1.47849 * 104.79673 * 37.07196 * 6 5 3 8 8 C 1.46894 * 111.00357 * 213.63989 * 7 6 5 9 9 C 1.53009 * 109.46764 * 290.84160 * 8 7 6 10 10 O 1.42899 * 109.47113 * 64.99856 * 9 8 7 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.47450 * 108.56529 * 335.90332 * 7 6 5 21 21 H 1.09005 * 109.88603 * 120.55410 * 20 7 6 22 22 C 1.52992 * 109.88943 * 241.58239 * 20 7 6 23 23 H 1.09001 * 109.46707 * 299.99705 * 1 2 3 24 24 H 1.08996 * 109.46971 * 59.99949 * 1 2 3 25 25 H 1.08999 * 109.47008 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99935 * 2 1 3 27 27 H 1.08997 * 109.47703 * 120.00175 * 2 1 3 28 28 H 1.08998 * 110.99375 * 323.97931 * 5 3 2 29 29 H 1.09000 * 110.99470 * 87.76733 * 5 3 2 30 30 H 1.08995 * 110.37935 * 278.24620 * 6 5 3 31 31 H 1.09005 * 110.37627 * 155.89833 * 6 5 3 32 32 H 1.09000 * 109.47283 * 170.84109 * 8 7 6 33 33 H 1.09002 * 109.47562 * 50.83429 * 8 7 6 34 34 H 1.09007 * 109.46516 * 304.99789 * 9 8 7 35 35 H 1.09004 * 109.47113 * 185.00258 * 9 8 7 36 36 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 37 37 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 38 38 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 39 39 H 1.09006 * 109.46954 * 58.54743 * 22 20 7 40 40 H 1.09001 * 109.46994 * 178.54443 * 22 20 7 41 41 H 1.08999 * 109.47133 * 298.54598 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5746 2.0143 0.8027 5 6 1.7862 2.1180 -1.3733 6 6 2.8986 3.1957 -1.4023 7 7 4.0639 2.5529 -0.7581 8 6 4.8574 3.5340 -0.0061 9 6 5.5477 4.4881 -0.9831 10 8 4.5614 5.2530 -1.6789 11 6 5.1035 6.1800 -2.6217 12 6 3.9807 6.9276 -3.2936 13 1 2.9557 6.7163 -3.0270 14 6 4.2621 7.8822 -4.2479 15 7 3.2822 8.5349 -4.8338 16 14 6.0350 8.2482 -4.7085 17 1 6.4481 7.3645 -5.8282 18 1 6.1544 9.6675 -5.1283 19 1 6.9119 8.0034 -3.5353 20 6 3.5777 1.4776 0.1258 21 1 3.9996 0.5221 -0.1860 22 6 3.9749 1.7741 1.5732 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8899 28 1 1.9119 1.4052 -2.1883 29 1 0.7975 2.5758 -1.4066 30 1 2.5900 4.0751 -0.8371 31 1 3.1361 3.4685 -2.4306 32 1 5.6098 3.0146 0.5874 33 1 4.2021 4.1019 0.6543 34 1 6.1337 3.9127 -1.6998 35 1 6.2058 5.1595 -0.4315 36 1 5.6801 5.6395 -3.3725 37 1 5.7526 6.8866 -2.1044 38 1 3.4801 9.2062 -5.5055 39 1 3.5561 2.7340 1.8756 40 1 3.5902 0.9887 2.2238 41 1 5.0615 1.8109 1.6515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617360660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:08 Heat of formation + Delta-G solvation = -75.090854 kcal Electronic energy + Delta-G solvation = -18106.419803 eV Core-core repulsion = 15406.056793 eV Total energy + Delta-G solvation = -2700.363009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77313 -38.51953 -35.58048 -34.78129 -32.52653 -31.89687 -30.03573 -28.24403 -26.52538 -24.09742 -23.57406 -23.39240 -21.25100 -20.33097 -19.01329 -17.44395 -17.34416 -16.70351 -16.30689 -16.00000 -15.50025 -15.29239 -14.83324 -14.52051 -14.41776 -14.18061 -13.62208 -13.34488 -13.21302 -13.12011 -12.96391 -12.75467 -12.60947 -12.27769 -12.03322 -11.92227 -11.83535 -11.76256 -11.49980 -11.38908 -11.30773 -11.18913 -10.91917 -10.29782 -9.17852 -8.37907 -6.45136 1.32103 1.34831 1.45726 2.28531 2.94923 3.05328 3.12996 3.59991 3.78269 3.86308 4.21437 4.31009 4.32231 4.41958 4.43563 4.46964 4.51063 4.58325 4.63900 4.69310 4.70290 4.78733 4.80085 4.90300 4.99131 5.01582 5.08249 5.15758 5.22000 5.25590 5.29198 5.33538 5.44214 5.44526 5.57249 5.94031 6.10129 6.26804 6.58512 6.76565 7.19472 8.79232 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034678 B = 0.005119 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.236462 B = 5468.225257 C = 6079.572616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.098 4.098 4 H 0.071 0.929 5 C -0.123 4.123 6 C 0.063 3.937 7 N -0.534 5.534 8 C 0.058 3.942 9 C 0.050 3.950 10 O -0.398 6.398 11 C 0.180 3.820 12 C -0.540 4.540 13 H 0.030 0.970 14 C 0.014 3.986 15 N -0.942 5.942 16 Si 0.954 3.046 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.247 1.247 20 C 0.068 3.932 21 H 0.091 0.909 22 C -0.164 4.164 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.035 0.965 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.005 0.995 37 H 0.009 0.991 38 H 0.273 0.727 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -17.353 12.656 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.117 4.117 4 H 0.090 0.910 5 C -0.161 4.161 6 C -0.065 4.065 7 N -0.258 5.258 8 C -0.070 4.070 9 C -0.027 4.027 10 O -0.317 6.317 11 C 0.104 3.896 12 C -0.578 4.578 13 H 0.048 0.952 14 C -0.184 4.184 15 N -0.582 5.582 16 Si 0.775 3.225 17 H -0.186 1.186 18 H -0.197 1.197 19 H -0.171 1.171 20 C -0.040 4.040 21 H 0.109 0.891 22 C -0.222 4.222 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.023 0.977 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.138 -17.440 12.189 21.385 hybrid contribution -0.013 1.214 -0.114 1.219 sum 2.125 -16.227 12.076 20.338 Atomic orbital electron populations 1.21775 0.95522 1.02027 1.01616 1.21447 0.96098 0.94148 1.02584 1.22477 0.95098 0.97631 0.96498 0.91026 1.22795 0.97746 0.97441 0.98148 1.22751 0.89741 0.95131 0.98865 1.63677 1.20904 1.11250 1.30014 1.22464 0.97972 0.92458 0.94072 1.22739 0.91691 0.93268 0.95047 1.87926 1.33878 1.54016 1.55915 1.20268 0.93923 0.87705 0.87694 1.21128 0.93535 1.20986 1.22160 0.95182 1.25808 1.03017 0.94640 0.94919 1.70031 1.34492 1.25984 1.27685 0.85627 0.78602 0.78332 0.79892 1.18556 1.19740 1.17062 1.22616 0.93892 0.95461 0.92007 0.89092 1.22340 1.02324 1.02002 0.95553 0.92769 0.93426 0.91704 0.91802 0.90574 0.90778 0.91264 0.95592 0.93203 0.86435 0.94715 0.93387 0.92550 0.97715 0.97331 0.91838 0.93377 0.90421 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.80 71.98 0.71 -1.72 16 2 C -0.11 -1.76 5.30 30.60 0.16 -1.60 16 3 C -0.10 -2.13 2.44 -9.61 -0.02 -2.15 16 4 H 0.07 1.60 7.85 -2.39 -0.02 1.58 16 5 C -0.12 -3.41 5.93 31.98 0.19 -3.22 16 6 C 0.06 2.25 5.07 86.77 0.44 2.69 16 7 N -0.53 -16.20 5.16 -860.51 -4.44 -20.64 16 8 C 0.06 1.69 4.26 86.31 0.37 2.06 16 9 C 0.05 1.76 6.23 71.99 0.45 2.21 16 10 O -0.40 -18.84 7.67 -148.98 -1.14 -19.98 16 11 C 0.18 9.29 4.76 71.24 0.34 9.63 16 12 C -0.54 -33.46 9.99 25.60 0.26 -33.21 16 13 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 14 C 0.01 0.84 5.47 84.66 0.46 1.31 16 15 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 16 Si 0.95 44.27 27.47 68.60 1.88 46.15 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 20 C 0.07 1.53 3.61 45.26 0.16 1.69 16 21 H 0.09 1.92 7.83 -2.38 -0.02 1.90 16 22 C -0.16 -2.97 7.83 71.98 0.56 -2.40 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.05 0.84 7.69 -2.39 -0.02 0.83 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 1.09 8.01 -2.39 -0.02 1.08 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.99 7.95 -2.39 -0.02 1.97 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.03 1.05 7.21 -2.39 -0.02 1.03 16 31 H 0.05 2.16 7.60 -2.38 -0.02 2.14 16 32 H 0.12 2.60 6.08 -2.39 -0.01 2.58 16 33 H 0.03 1.06 6.81 -2.39 -0.02 1.05 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.01 0.26 7.57 -2.39 -0.02 0.24 16 37 H 0.01 0.44 7.20 -2.39 -0.02 0.43 16 38 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.05 0.98 6.91 -2.38 -0.02 0.96 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.17 6.42 -2.39 -0.02 1.15 16 Total: -1.00 -69.49 314.19 1.58 -67.91 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.91 Total: 11.03 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.08 Total: -24.71 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -4.14 Total: -80.40 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.14 Total: -19.98 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -69.49 1.58 -67.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617360660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.183 kcal (2) G-P(sol) polarization free energy of solvation -69.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds