Wall clock time and date at job start Sun Mar 29 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 H 1.08994 * 110.27566 * 307.09365 * 3 2 1 5 5 C 1.54591 * 110.30826 * 69.28571 * 3 2 1 6 6 C 1.54944 * 102.92162 * 140.87319 * 5 3 2 7 7 N 1.48530 * 103.22690 * 322.58666 * 6 5 3 8 8 C 1.46896 * 111.00248 * 159.71892 * 7 6 5 9 9 C 1.53002 * 109.47035 * 52.60492 * 8 7 6 10 10 O 1.42905 * 109.47079 * 64.99813 * 9 8 7 11 11 C 1.42899 * 113.99778 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47163 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00281 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00144 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47165 * 89.99826 * 16 14 12 18 18 H 1.48501 * 109.47314 * 209.99749 * 16 14 12 19 19 H 1.48493 * 109.47138 * 330.00044 * 16 14 12 20 20 C 1.47907 * 105.82222 * 39.20483 * 7 6 5 21 21 H 1.08993 * 109.91384 * 94.02182 * 20 7 6 22 22 C 1.52997 * 109.91716 * 215.31739 * 20 7 6 23 23 H 1.08993 * 109.47591 * 59.99540 * 1 2 3 24 24 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47081 * 299.99642 * 1 2 3 26 26 H 1.09007 * 109.46846 * 240.00134 * 2 1 3 27 27 H 1.09003 * 109.47032 * 120.00472 * 2 1 3 28 28 H 1.08997 * 110.72668 * 259.22587 * 5 3 2 29 29 H 1.08998 * 110.72638 * 22.34179 * 5 3 2 30 30 H 1.08994 * 110.66882 * 204.15390 * 6 5 3 31 31 H 1.09001 * 110.66726 * 81.01979 * 6 5 3 32 32 H 1.08997 * 109.47137 * 292.60672 * 8 7 6 33 33 H 1.09005 * 109.47283 * 172.60202 * 8 7 6 34 34 H 1.09004 * 109.46930 * 305.00039 * 9 8 7 35 35 H 1.09000 * 109.47312 * 184.99983 * 9 8 7 36 36 H 1.08997 * 109.47442 * 300.00036 * 11 10 9 37 37 H 1.08997 * 109.47171 * 60.00232 * 11 10 9 38 38 H 0.97001 * 119.99741 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47522 * 58.55049 * 22 20 7 40 40 H 1.09005 * 109.46683 * 178.54198 * 22 20 7 41 41 H 1.08998 * 109.47652 * 298.54412 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0041 -0.8155 5 6 1.7353 2.1193 1.3561 6 6 3.0093 2.9618 1.6168 7 7 4.1011 2.0940 1.1057 8 6 5.3089 2.8801 0.8212 9 6 5.6800 3.7087 2.0528 10 8 6.0415 2.8344 3.1238 11 6 6.4070 3.5110 4.3282 12 6 6.7677 2.4980 5.3839 13 1 6.7227 1.4428 5.1577 14 6 7.1561 2.9179 6.6384 15 7 7.4713 2.0338 7.5596 16 14 7.2346 4.7428 7.0296 17 1 5.9215 5.1929 7.5575 18 1 8.2873 4.9859 8.0485 19 1 7.5573 5.5005 5.7940 20 6 3.5746 1.4668 -0.1260 21 1 3.8665 2.0548 -0.9960 22 6 4.1098 0.0392 -0.2536 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.8578 2.7611 1.2784 29 1 1.5972 1.3722 2.1377 30 1 3.1346 3.1498 2.6830 31 1 2.9710 3.8990 1.0616 32 1 5.1193 3.5457 -0.0208 33 1 6.1306 2.2075 0.5748 34 1 4.8263 4.3166 2.3523 35 1 6.5223 4.3579 1.8136 36 1 7.2642 4.1564 4.1366 37 1 5.5681 4.1146 4.6748 38 1 7.7442 2.3293 8.4422 39 1 3.8163 -0.5387 0.6228 40 1 3.6971 -0.4248 -1.1495 41 1 5.1972 0.0637 -0.3252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617360661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:10 Heat of formation + Delta-G solvation = -52.643984 kcal Electronic energy + Delta-G solvation = -17980.753676 eV Core-core repulsion = 15281.364036 eV Total energy + Delta-G solvation = -2699.389640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64668 -36.88978 -34.55903 -32.58309 -31.35484 -30.85089 -28.23988 -26.70091 -25.48806 -23.03570 -22.39599 -21.78708 -20.31322 -18.90814 -16.83941 -16.22249 -15.70899 -15.34476 -14.74792 -14.67466 -14.31057 -14.15947 -13.69028 -13.31142 -12.99342 -12.55871 -12.48122 -12.29360 -11.87841 -11.70287 -11.61393 -11.33666 -11.16651 -11.09937 -10.86659 -10.75457 -10.51642 -10.39770 -10.33276 -10.21956 -9.82207 -9.11940 -8.78238 -8.40263 -8.13054 -6.06864 -4.05097 3.26938 3.33756 3.35408 4.08738 4.39114 4.53215 4.65544 4.70677 4.81117 5.19623 5.24258 5.25065 5.27669 5.32704 5.40623 5.52897 5.57646 5.58465 5.67287 5.77091 5.79952 5.86075 5.90175 5.91712 5.98055 6.07839 6.09423 6.20792 6.25226 6.28880 6.35854 6.47775 6.64799 7.04609 7.15863 7.30454 7.65272 8.10263 8.73738 9.06802 9.52966 11.06381 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.004803 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.339129 B = 5828.244982 C = 5971.246066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.094 4.094 4 H 0.069 0.931 5 C -0.117 4.117 6 C 0.035 3.965 7 N -0.496 5.496 8 C 0.054 3.946 9 C 0.059 3.941 10 O -0.364 6.364 11 C 0.168 3.832 12 C -0.514 4.514 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.064 3.936 21 H 0.045 0.955 22 C -0.136 4.136 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.000 1.000 37 H -0.004 1.004 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 1.032 -17.287 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.113 4.113 4 H 0.087 0.913 5 C -0.155 4.155 6 C -0.093 4.093 7 N -0.220 5.220 8 C -0.075 4.075 9 C -0.019 4.019 10 O -0.283 6.283 11 C 0.092 3.908 12 C -0.552 4.552 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.045 4.045 21 H 0.063 0.937 22 C -0.193 4.193 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.017 0.983 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.609 0.418 -16.722 20.361 hybrid contribution -0.036 2.024 -0.233 2.037 sum -11.645 2.441 -16.954 20.713 Atomic orbital electron populations 1.21812 0.96338 1.01324 1.01582 1.21724 0.95153 0.95927 1.02562 1.22057 0.94606 0.96775 0.97834 0.91276 1.22568 0.96869 0.99101 0.96968 1.23224 0.90463 0.94111 1.01509 1.64720 1.03362 1.28738 1.25216 1.22301 0.93927 0.95965 0.95270 1.22393 0.97838 0.92681 0.89019 1.88029 1.87228 1.32208 1.20790 1.20582 0.93008 0.94030 0.83169 1.20902 1.44920 0.95215 0.94190 0.89883 1.24763 0.94861 0.97562 0.95790 1.69882 1.45866 1.33523 1.04273 0.86866 0.78311 0.86045 0.78597 1.19987 1.20822 1.19198 1.22446 0.93721 0.96640 0.91691 0.93718 1.21836 1.00710 0.95372 1.01395 0.93210 0.92973 0.92655 0.91715 0.91047 0.91602 0.90390 0.89391 0.94474 0.94353 0.89901 0.94394 0.94215 0.98259 0.98678 0.92445 0.91364 0.92749 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.78 37.16 0.36 -0.94 16 2 C -0.12 -1.13 4.11 -26.73 -0.11 -1.24 16 3 C -0.09 -1.00 2.99 -89.26 -0.27 -1.27 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.12 -1.38 5.87 -24.87 -0.15 -1.53 16 6 C 0.03 0.49 5.09 -1.90 -0.01 0.48 16 7 N -0.50 -7.66 4.98 -222.57 -1.11 -8.76 16 8 C 0.05 0.82 5.41 -3.82 -0.02 0.80 16 9 C 0.06 1.07 5.76 37.16 0.21 1.28 16 10 O -0.36 -8.78 10.27 -35.23 -0.36 -9.14 16 11 C 0.17 4.38 4.76 36.00 0.17 4.55 16 12 C -0.51 -15.67 9.99 -34.44 -0.34 -16.01 16 13 H 0.08 2.78 8.06 -52.48 -0.42 2.36 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 16 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 20 C 0.06 0.79 3.08 -66.64 -0.21 0.58 16 21 H 0.04 0.53 7.57 -51.93 -0.39 0.13 16 22 C -0.14 -1.61 8.34 37.16 0.31 -1.30 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.48 7.58 -51.93 -0.39 0.09 16 26 H 0.06 0.58 6.44 -51.92 -0.33 0.24 16 27 H 0.07 0.78 6.93 -51.93 -0.36 0.42 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 30 H 0.09 1.44 7.56 -51.93 -0.39 1.05 16 31 H 0.04 0.48 8.01 -51.93 -0.42 0.06 16 32 H 0.04 0.50 7.81 -51.93 -0.41 0.09 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.04 0.66 6.52 -51.93 -0.34 0.32 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 37 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 38 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.07 0.89 6.80 -51.93 -0.35 0.53 16 40 H 0.05 0.52 6.74 -51.93 -0.35 0.17 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -32.11 315.94 -8.20 -40.31 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -7.46 Total: -4.36 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.14 Total: -12.54 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.33 Total: -36.12 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.36 Total: -9.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.11 -8.20 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617360661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.333 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds