Wall clock time and date at job start Sun Mar 29 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 H 1.08994 * 110.27566 * 307.09365 * 3 2 1 5 5 C 1.54591 * 110.30826 * 69.28571 * 3 2 1 6 6 C 1.54944 * 102.92162 * 140.87319 * 5 3 2 7 7 N 1.48530 * 103.22690 * 322.58666 * 6 5 3 8 8 C 1.46896 * 111.00248 * 159.71892 * 7 6 5 9 9 C 1.53002 * 109.47035 * 52.60492 * 8 7 6 10 10 O 1.42905 * 109.47079 * 64.99813 * 9 8 7 11 11 C 1.42899 * 113.99778 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47163 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00281 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00144 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47165 * 89.99826 * 16 14 12 18 18 H 1.48501 * 109.47314 * 209.99749 * 16 14 12 19 19 H 1.48493 * 109.47138 * 330.00044 * 16 14 12 20 20 C 1.47907 * 105.82222 * 39.20483 * 7 6 5 21 21 H 1.08993 * 109.91384 * 94.02182 * 20 7 6 22 22 C 1.52997 * 109.91716 * 215.31739 * 20 7 6 23 23 H 1.08993 * 109.47591 * 59.99540 * 1 2 3 24 24 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47081 * 299.99642 * 1 2 3 26 26 H 1.09007 * 109.46846 * 240.00134 * 2 1 3 27 27 H 1.09003 * 109.47032 * 120.00472 * 2 1 3 28 28 H 1.08997 * 110.72668 * 259.22587 * 5 3 2 29 29 H 1.08998 * 110.72638 * 22.34179 * 5 3 2 30 30 H 1.08994 * 110.66882 * 204.15390 * 6 5 3 31 31 H 1.09001 * 110.66726 * 81.01979 * 6 5 3 32 32 H 1.08997 * 109.47137 * 292.60672 * 8 7 6 33 33 H 1.09005 * 109.47283 * 172.60202 * 8 7 6 34 34 H 1.09004 * 109.46930 * 305.00039 * 9 8 7 35 35 H 1.09000 * 109.47312 * 184.99983 * 9 8 7 36 36 H 1.08997 * 109.47442 * 300.00036 * 11 10 9 37 37 H 1.08997 * 109.47171 * 60.00232 * 11 10 9 38 38 H 0.97001 * 119.99741 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47522 * 58.55049 * 22 20 7 40 40 H 1.09005 * 109.46683 * 178.54198 * 22 20 7 41 41 H 1.08998 * 109.47652 * 298.54412 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0041 -0.8155 5 6 1.7353 2.1193 1.3561 6 6 3.0093 2.9618 1.6168 7 7 4.1011 2.0940 1.1057 8 6 5.3089 2.8801 0.8212 9 6 5.6800 3.7087 2.0528 10 8 6.0415 2.8344 3.1238 11 6 6.4070 3.5110 4.3282 12 6 6.7677 2.4980 5.3839 13 1 6.7227 1.4428 5.1577 14 6 7.1561 2.9179 6.6384 15 7 7.4713 2.0338 7.5596 16 14 7.2346 4.7428 7.0296 17 1 5.9215 5.1929 7.5575 18 1 8.2873 4.9859 8.0485 19 1 7.5573 5.5005 5.7940 20 6 3.5746 1.4668 -0.1260 21 1 3.8665 2.0548 -0.9960 22 6 4.1098 0.0392 -0.2536 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.8578 2.7611 1.2784 29 1 1.5972 1.3722 2.1377 30 1 3.1346 3.1498 2.6830 31 1 2.9710 3.8990 1.0616 32 1 5.1193 3.5457 -0.0208 33 1 6.1306 2.2075 0.5748 34 1 4.8263 4.3166 2.3523 35 1 6.5223 4.3579 1.8136 36 1 7.2642 4.1564 4.1366 37 1 5.5681 4.1146 4.6748 38 1 7.7442 2.3293 8.4422 39 1 3.8163 -0.5387 0.6228 40 1 3.6971 -0.4248 -1.1495 41 1 5.1972 0.0637 -0.3252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617360661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:10 Heat of formation + Delta-G solvation = -74.676862 kcal Electronic energy + Delta-G solvation = -17981.709093 eV Core-core repulsion = 15281.364036 eV Total energy + Delta-G solvation = -2700.345057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67728 -38.57837 -35.68964 -34.77719 -32.34679 -32.00095 -30.10193 -28.11079 -26.46820 -23.98767 -23.91960 -23.50452 -21.47106 -19.81962 -19.04578 -17.48176 -17.37911 -16.62667 -16.32374 -15.89965 -15.63115 -15.34468 -14.81806 -14.69156 -14.40157 -14.22597 -13.73037 -13.38356 -13.05938 -13.02377 -12.87899 -12.66025 -12.55259 -12.25733 -12.14243 -12.04496 -11.86830 -11.71984 -11.40369 -11.31296 -11.25575 -11.15791 -10.92120 -10.31581 -9.21724 -8.37462 -6.45310 1.31682 1.35336 1.46236 2.28857 2.94784 2.97679 3.15531 3.63023 3.74687 3.90937 4.16989 4.23936 4.28515 4.39103 4.44894 4.47036 4.48298 4.53989 4.59558 4.68216 4.73148 4.77325 4.89290 4.91458 4.95017 5.02873 5.03233 5.07459 5.18573 5.26745 5.29022 5.43682 5.44055 5.45967 5.57790 5.93572 6.11272 6.23656 6.59045 6.79176 7.19399 8.80106 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.004803 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.339129 B = 5828.244982 C = 5971.246066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.087 4.087 4 H 0.090 0.910 5 C -0.113 4.113 6 C 0.034 3.966 7 N -0.530 5.530 8 C 0.059 3.941 9 C 0.050 3.950 10 O -0.394 6.394 11 C 0.180 3.820 12 C -0.544 4.544 13 H 0.026 0.974 14 C 0.013 3.987 15 N -0.943 5.943 16 Si 0.957 3.043 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.246 1.246 20 C 0.062 3.938 21 H 0.059 0.941 22 C -0.133 4.133 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.010 0.990 37 H 0.007 0.993 38 H 0.273 0.727 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.932 3.442 -19.051 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.105 4.105 4 H 0.108 0.892 5 C -0.151 4.151 6 C -0.094 4.094 7 N -0.255 5.255 8 C -0.069 4.069 9 C -0.027 4.027 10 O -0.313 6.313 11 C 0.104 3.896 12 C -0.582 4.582 13 H 0.045 0.955 14 C -0.185 4.185 15 N -0.583 5.583 16 Si 0.778 3.222 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.170 1.170 20 C -0.046 4.046 21 H 0.077 0.923 22 C -0.190 4.190 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.705 2.815 -18.513 22.629 hybrid contribution 0.300 1.141 0.284 1.214 sum -12.405 3.957 -18.228 22.401 Atomic orbital electron populations 1.21785 0.95202 1.01831 1.01946 1.21685 0.96114 0.95264 1.02078 1.22057 0.93434 0.97430 0.97622 0.89155 1.22539 0.96617 0.98758 0.97186 1.23177 0.91196 0.95224 0.99787 1.64659 1.03943 1.29559 1.27361 1.22248 0.93828 0.96084 0.94758 1.22745 0.98812 0.92914 0.88185 1.87983 1.87540 1.34301 1.21486 1.20279 0.93559 0.92647 0.83108 1.21156 1.46580 0.93774 0.96676 0.95512 1.25855 0.93531 1.04099 0.94992 1.70042 1.46402 1.36765 1.05070 0.85588 0.79244 0.78044 0.79321 1.18368 1.19650 1.16955 1.22541 0.94826 0.96404 0.90867 0.92256 1.21829 0.99974 0.95480 1.01743 0.91913 0.92497 0.93154 0.90606 0.93155 0.89449 0.92255 0.92590 0.92644 0.90962 0.91022 0.93310 0.92589 0.97220 0.97552 0.91784 0.93273 0.90140 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.78 71.98 0.70 -1.54 16 2 C -0.11 -2.03 4.11 30.59 0.13 -1.90 16 3 C -0.09 -1.66 2.99 -9.92 -0.03 -1.69 16 4 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 5 C -0.11 -2.53 5.87 31.80 0.19 -2.34 16 6 C 0.03 0.92 5.09 86.65 0.44 1.36 16 7 N -0.53 -16.07 4.98 -858.09 -4.27 -20.34 16 8 C 0.06 1.73 5.41 86.30 0.47 2.20 16 9 C 0.05 1.78 5.76 71.98 0.41 2.19 16 10 O -0.39 -19.32 10.27 -148.98 -1.53 -20.85 16 11 C 0.18 9.41 4.76 71.24 0.34 9.75 16 12 C -0.54 -34.42 9.99 25.60 0.26 -34.16 16 13 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 14 C 0.01 0.79 5.47 84.65 0.46 1.25 16 15 N -0.94 -60.77 13.96 21.45 0.30 -60.47 16 16 Si 0.96 44.31 27.47 68.60 1.88 46.20 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 20 C 0.06 1.42 3.08 45.06 0.14 1.56 16 21 H 0.06 1.21 7.57 -2.39 -0.02 1.19 16 22 C -0.13 -3.07 8.34 71.98 0.60 -2.47 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.80 7.58 -2.39 -0.02 0.78 16 26 H 0.08 1.18 6.44 -2.38 -0.02 1.16 16 27 H 0.05 1.11 6.93 -2.39 -0.02 1.09 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.53 7.76 -2.39 -0.02 1.51 16 30 H 0.06 1.86 7.56 -2.39 -0.02 1.85 16 31 H 0.06 1.29 8.01 -2.39 -0.02 1.28 16 32 H 0.07 1.64 7.81 -2.39 -0.02 1.62 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.05 1.61 6.52 -2.38 -0.02 1.60 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 37 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 38 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 39 H 0.05 1.31 6.80 -2.39 -0.02 1.29 16 40 H 0.08 1.40 6.74 -2.38 -0.02 1.39 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.30 315.94 1.40 -70.90 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.91 Total: 10.37 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.11 Total: -25.80 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.97 Total: -80.81 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.53 Total: -20.85 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -72.30 1.40 -70.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617360661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.780 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds