Wall clock time and date at job start Sun Mar 29 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47073 * 2 1 4 4 H 1.09000 * 110.27363 * 52.91823 * 3 2 1 5 5 C 1.54589 * 110.31247 * 290.71790 * 3 2 1 6 6 C 1.54933 * 102.92293 * 219.12790 * 5 3 2 7 7 N 1.48530 * 103.22868 * 37.41685 * 6 5 3 8 8 C 1.46901 * 110.99880 * 200.28181 * 7 6 5 9 9 C 1.53001 * 109.46904 * 287.39083 * 8 7 6 10 10 O 1.42901 * 109.47084 * 65.00410 * 9 8 7 11 11 C 1.42895 * 113.99948 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47147 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 89.99746 * 16 14 12 18 18 H 1.48504 * 109.47104 * 209.99992 * 16 14 12 19 19 H 1.48495 * 109.47249 * 329.99739 * 16 14 12 20 20 C 1.47899 * 105.81875 * 320.79177 * 7 6 5 21 21 H 1.09000 * 109.92247 * 265.78347 * 20 7 6 22 22 C 1.52994 * 109.91947 * 144.68359 * 20 7 6 23 23 H 1.09002 * 109.47559 * 59.99496 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47083 * 299.99787 * 1 2 3 26 26 H 1.09001 * 109.46745 * 240.00629 * 2 1 3 27 27 H 1.08990 * 109.47377 * 120.00836 * 2 1 3 28 28 H 1.08998 * 110.72721 * 337.48668 * 5 3 2 29 29 H 1.09003 * 110.72281 * 100.76953 * 5 3 2 30 30 H 1.09005 * 110.66824 * 278.98074 * 6 5 3 31 31 H 1.08998 * 110.66695 * 155.85445 * 6 5 3 32 32 H 1.09001 * 109.47133 * 167.39427 * 8 7 6 33 33 H 1.08998 * 109.47415 * 47.39314 * 8 7 6 34 34 H 1.08995 * 109.47456 * 304.99945 * 9 8 7 35 35 H 1.09003 * 109.47124 * 185.00461 * 9 8 7 36 36 H 1.09001 * 109.46798 * 60.00190 * 11 10 9 37 37 H 1.09000 * 109.47736 * 300.00432 * 11 10 9 38 38 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.47505 * 61.45365 * 22 20 7 40 40 H 1.08999 * 109.47761 * 181.45570 * 22 20 7 41 41 H 1.09003 * 109.47432 * 301.45649 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0041 0.8157 5 6 1.7353 2.1194 -1.3560 6 6 3.0092 2.9618 -1.6167 7 7 4.1010 2.0940 -1.1058 8 6 5.3089 2.8802 -0.8214 9 6 5.9630 3.3044 -2.1378 10 8 5.0903 4.1926 -2.8389 11 6 5.6094 4.6514 -4.0886 12 6 4.6120 5.5758 -4.7380 13 1 3.6755 5.7917 -4.2453 14 6 4.8950 6.1459 -5.9610 15 7 6.0352 5.8825 -6.5613 16 14 3.6589 7.2923 -6.7656 17 1 3.9235 8.6880 -6.3328 18 1 3.7858 7.1994 -8.2423 19 1 2.2847 6.9009 -6.3614 20 6 3.5746 1.4668 0.1258 21 1 3.8695 2.0528 0.9963 22 6 4.1098 0.0392 0.2534 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.6000 1.3725 -2.1382 29 1 0.8577 2.7612 -1.2782 30 1 2.9709 3.8991 -1.0614 31 1 3.1343 3.1501 -2.6830 32 1 6.0094 2.2747 -0.2462 33 1 5.0387 3.7667 -0.2477 34 1 6.1525 2.4228 -2.7501 35 1 6.9054 3.8108 -1.9287 36 1 5.7918 3.7978 -4.7416 37 1 6.5443 5.1858 -3.9197 38 1 6.2344 6.2839 -7.4216 39 1 5.1972 0.0637 0.3248 40 1 3.6972 -0.4249 1.1492 41 1 3.8163 -0.5386 -0.6231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617360662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:12 Heat of formation + Delta-G solvation = -60.969593 kcal Electronic energy + Delta-G solvation = -18050.998537 eV Core-core repulsion = 15351.247871 eV Total energy + Delta-G solvation = -2699.750666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48022 -36.71383 -34.38586 -32.66918 -31.26108 -30.71634 -27.78339 -26.45424 -25.26671 -22.93050 -22.38740 -21.77040 -20.46189 -18.82011 -16.43405 -16.07379 -15.57360 -15.31765 -14.58791 -14.49393 -14.31218 -13.99711 -13.53455 -13.30942 -12.94305 -12.35106 -12.30996 -12.15006 -11.89382 -11.52241 -11.31621 -11.22578 -11.09045 -10.92063 -10.75013 -10.61485 -10.45928 -10.35531 -10.29940 -10.21673 -9.90431 -9.06050 -8.76592 -8.13096 -8.04597 -6.08449 -4.09958 3.31246 3.36347 3.41402 4.24325 4.36973 4.65233 4.76110 4.87330 4.99371 5.26014 5.28124 5.29327 5.42732 5.46423 5.49428 5.60174 5.67635 5.75412 5.81519 5.82790 5.90455 5.99094 6.02669 6.11765 6.14005 6.16735 6.25697 6.30449 6.38251 6.45797 6.51714 6.79827 7.16536 7.31143 7.42637 7.49056 7.81585 8.19076 8.62880 9.03766 9.54898 11.03145 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.005128 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.156638 B = 5459.309559 C = 6171.989232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.094 4.094 4 H 0.068 0.932 5 C -0.121 4.121 6 C 0.047 3.953 7 N -0.508 5.508 8 C 0.053 3.947 9 C 0.068 3.932 10 O -0.392 6.392 11 C 0.195 3.805 12 C -0.512 4.512 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.062 3.938 21 H 0.044 0.956 22 C -0.135 4.135 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.005 0.995 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 -10.719 13.898 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.113 4.113 4 H 0.087 0.913 5 C -0.159 4.159 6 C -0.080 4.080 7 N -0.233 5.233 8 C -0.075 4.075 9 C -0.010 4.010 10 O -0.312 6.312 11 C 0.121 3.879 12 C -0.550 4.550 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.733 3.267 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.047 4.047 21 H 0.063 0.937 22 C -0.192 4.192 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.413 -11.008 13.416 18.501 hybrid contribution -0.313 1.264 0.003 1.302 sum -6.726 -9.745 13.419 17.896 Atomic orbital electron populations 1.21814 0.96341 1.01175 1.01766 1.21706 0.95205 0.96088 1.02169 1.22050 0.94515 0.96505 0.98260 0.91316 1.22641 0.97883 0.99098 0.96290 1.23267 0.88320 0.93237 1.03162 1.64721 1.04416 1.29377 1.24736 1.22285 0.92923 0.95728 0.96609 1.22221 0.92624 0.93523 0.92674 1.87851 1.43737 1.63479 1.36173 1.20160 0.94683 0.93626 0.79428 1.21043 1.03679 1.26790 1.03510 0.91675 1.24940 0.95808 0.96931 0.96800 1.69971 1.22935 1.44317 1.16574 0.86368 0.81336 0.80722 0.78243 1.20545 1.21103 1.19643 1.22395 0.93911 0.96122 0.92281 0.93743 1.21843 1.00318 0.95744 1.01311 0.92545 0.93107 0.93153 0.91343 0.91909 0.90915 0.91630 0.94023 0.87733 0.90677 0.94350 0.93691 0.94427 0.97727 0.98010 0.92711 0.93277 0.92735 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.78 37.16 0.36 -1.02 16 2 C -0.11 -1.13 4.12 -26.73 -0.11 -1.24 16 3 C -0.09 -1.10 2.99 -89.26 -0.27 -1.37 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 5 C -0.12 -1.64 5.87 -24.88 -0.15 -1.78 16 6 C 0.05 0.80 5.32 -1.90 -0.01 0.79 16 7 N -0.51 -8.04 4.88 -222.58 -1.09 -9.12 16 8 C 0.05 0.85 5.27 -3.82 -0.02 0.83 16 9 C 0.07 1.30 6.25 37.16 0.23 1.53 16 10 O -0.39 -9.39 7.70 -35.23 -0.27 -9.66 16 11 C 0.20 5.40 5.69 36.01 0.20 5.60 16 12 C -0.51 -15.06 9.43 -34.44 -0.32 -15.39 16 13 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.06 0.79 3.05 -66.64 -0.20 0.58 16 21 H 0.04 0.56 7.77 -51.93 -0.40 0.16 16 22 C -0.13 -1.48 8.34 37.15 0.31 -1.17 16 23 H 0.06 0.53 7.58 -51.93 -0.39 0.14 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.73 6.93 -51.93 -0.36 0.37 16 27 H 0.06 0.56 6.44 -51.93 -0.33 0.23 16 28 H 0.07 1.00 7.76 -51.93 -0.40 0.60 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.73 7.81 -51.93 -0.41 0.33 16 31 H 0.10 2.13 6.80 -51.93 -0.35 1.78 16 32 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.04 0.63 7.83 -51.93 -0.41 0.22 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.50 6.74 -51.93 -0.35 0.15 16 41 H 0.06 0.76 6.80 -51.93 -0.35 0.40 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -30.28 318.24 -8.45 -38.73 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -7.53 Total: -4.17 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.07 Total: -11.10 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.35 Total: -35.50 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.27 Total: -9.66 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.28 -8.45 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617360662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.244 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds