Wall clock time and date at job start Sun Mar 29 2020 22:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99467 * 2 1 4 4 C 1.53776 * 113.61363 * 249.13459 * 3 2 1 5 5 C 1.54047 * 86.98841 * 270.83954 * 4 3 2 6 6 C 1.52997 * 113.62314 * 220.01830 * 5 4 3 7 7 N 1.46897 * 109.47618 * 272.49855 * 6 5 4 8 8 C 1.46894 * 111.00171 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47220 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47224 * 300.00094 * 9 8 7 11 11 C 1.52999 * 109.46666 * 60.00346 * 9 8 7 12 12 C 1.50706 * 109.47203 * 179.97438 * 9 8 7 13 13 H 1.07996 * 119.99567 * 1.36549 * 12 9 8 14 14 C 1.37878 * 119.99746 * 181.36356 * 12 9 8 15 15 N 1.31512 * 119.99803 * 193.96444 * 14 12 9 16 16 Si 1.86798 * 120.00130 * 13.96442 * 14 12 9 17 17 H 1.48498 * 109.46971 * 84.55682 * 16 14 12 18 18 H 1.48498 * 109.46798 * 204.55463 * 16 14 12 19 19 H 1.48496 * 109.46994 * 324.55567 * 16 14 12 20 20 C 1.53775 * 87.07792 * 334.57187 * 5 4 3 21 21 H 1.08995 * 109.47131 * 60.00250 * 1 2 3 22 22 H 1.08996 * 109.47098 * 299.99849 * 1 2 3 23 23 H 1.08997 * 109.46479 * 180.02562 * 1 2 3 24 24 H 1.09000 * 112.85268 * 20.33944 * 3 2 1 25 25 H 1.09002 * 113.61628 * 25.43782 * 4 3 2 26 26 H 1.09005 * 113.61251 * 156.34148 * 4 3 2 27 27 H 1.09011 * 113.68863 * 89.12565 * 5 4 3 28 28 H 1.08999 * 109.46925 * 32.50525 * 6 5 4 29 29 H 1.09004 * 109.46956 * 152.49581 * 6 5 4 30 30 H 1.00895 * 110.99663 * 56.04191 * 7 6 5 31 31 H 1.09001 * 109.47345 * 300.00136 * 8 7 6 32 32 H 1.09004 * 109.46990 * 60.00115 * 8 7 6 33 33 H 1.09005 * 109.47010 * 69.31611 * 10 9 8 34 34 H 1.09007 * 109.47134 * 189.31351 * 10 9 8 35 35 H 1.09003 * 109.47435 * 309.31360 * 10 9 8 36 36 H 1.08992 * 109.47749 * 60.00125 * 11 9 8 37 37 H 1.09006 * 109.46989 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.47279 * 299.99631 * 11 9 8 39 39 H 0.96998 * 120.00385 * 180.02562 * 15 14 12 40 40 H 1.09007 * 113.61449 * 270.87562 * 20 5 4 41 41 H 1.09004 * 113.61666 * 139.97449 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 2.7192 1.6642 -1.3166 5 6 3.9895 1.0407 -0.7079 6 6 5.2669 1.8221 -1.0216 7 7 5.8229 1.3588 -2.2999 8 6 7.0528 2.0891 -2.6346 9 6 7.6014 1.5796 -3.9689 10 6 7.9102 0.0854 -3.8562 11 6 6.5601 1.8038 -5.0673 12 6 8.8628 2.3293 -4.3126 13 1 9.2478 3.0772 -3.6354 14 6 9.5251 2.0601 -5.4916 15 7 10.7517 2.4988 -5.6716 16 14 8.6801 1.0724 -6.8331 17 1 7.8459 1.9777 -7.6635 18 1 9.7048 0.4208 -7.6879 19 1 7.8181 0.0335 -6.2144 20 6 3.3923 1.3645 0.6717 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.3219 2.0753 0.3491 25 1 2.3358 1.1218 -2.1808 26 1 2.8000 2.7372 -1.4907 27 1 4.0887 -0.0276 -0.9008 28 1 5.0350 2.8850 -1.0901 29 1 5.9963 1.6599 -0.2280 30 1 5.1423 1.4388 -3.0404 31 1 6.8329 3.1537 -2.7145 32 1 7.7947 1.9291 -1.8523 33 1 6.9778 -0.4730 -3.7728 34 1 8.4514 -0.2417 -4.7440 35 1 8.5213 -0.0936 -2.9716 36 1 6.3401 2.8683 -5.1477 37 1 6.9508 1.4404 -6.0179 38 1 5.6476 1.2619 -4.8190 39 1 11.2176 2.3098 -6.5011 40 1 3.6568 2.3557 1.0402 41 1 3.5520 0.5802 1.4117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664967063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:24 Heat of formation + Delta-G solvation = -14.303201 kcal Electronic energy + Delta-G solvation = -17839.074570 eV Core-core repulsion = 15141.347511 eV Total energy + Delta-G solvation = -2697.727059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73927 -37.30077 -36.13713 -33.46985 -31.42923 -27.75818 -26.55369 -26.18524 -25.77706 -24.99837 -23.69581 -21.85812 -19.56402 -18.64557 -16.67096 -16.01147 -15.81330 -15.65753 -15.37523 -14.97321 -14.21009 -13.85187 -13.48537 -13.08588 -12.90242 -12.59235 -12.49466 -12.33142 -12.04116 -11.79622 -11.74869 -11.65410 -10.99297 -10.66087 -10.60761 -10.25765 -10.16044 -9.95979 -9.87270 -9.76957 -9.64422 -8.91544 -8.51542 -8.33405 -7.79231 -6.04766 -4.00135 3.34365 3.43932 3.46160 3.47687 4.41359 4.47319 4.55521 4.67124 4.78695 4.95608 5.11362 5.16121 5.28418 5.29517 5.40287 5.56989 5.58967 5.73515 5.80860 5.87772 5.99848 6.07177 6.18733 6.21613 6.30833 6.43659 6.55945 6.64096 6.81790 6.85872 6.99001 7.03346 7.12036 7.45279 7.58055 7.68473 7.90771 8.00486 8.59126 9.00083 9.61647 11.08792 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047722 B = 0.004474 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.594913 B = 6256.229478 C = 6548.040824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.062 3.938 4 C -0.160 4.160 5 C -0.097 4.097 6 C 0.067 3.933 7 N -0.689 5.689 8 C 0.084 3.916 9 C 0.040 3.960 10 C -0.126 4.126 11 C -0.148 4.148 12 C -0.512 4.512 13 H 0.071 0.929 14 C 0.073 3.927 15 N -0.898 5.898 16 Si 0.885 3.115 17 H -0.289 1.289 18 H -0.307 1.307 19 H -0.245 1.245 20 C -0.135 4.135 21 H 0.041 0.959 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.335 0.665 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.090 0.910 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 -2.411 10.455 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.004 3.996 4 C -0.197 4.197 5 C -0.116 4.116 6 C -0.063 4.063 7 N -0.321 5.321 8 C -0.044 4.044 9 C 0.039 3.961 10 C -0.184 4.184 11 C -0.205 4.205 12 C -0.550 4.550 13 H 0.089 0.911 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.217 1.217 18 H -0.236 1.236 19 H -0.171 1.171 20 C -0.173 4.173 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.351 -3.090 10.631 21.432 hybrid contribution -0.896 0.762 -1.163 1.654 sum -19.247 -2.328 9.469 21.576 Atomic orbital electron populations 1.22790 0.81180 1.02689 0.99857 1.87904 1.19453 1.26704 1.94613 1.23078 0.94401 0.84808 0.97360 1.23617 0.97394 1.01024 0.97681 1.22559 0.92901 1.01195 0.94898 1.21925 0.95219 0.95439 0.93687 1.60599 1.08027 1.59421 1.04030 1.21949 0.89993 0.93824 0.98647 1.18481 0.93878 0.93662 0.90121 1.22065 0.98908 0.97199 1.00218 1.22357 0.98402 0.99961 0.99821 1.20886 1.06389 1.22061 1.05669 0.91120 1.24981 0.94183 0.95177 0.98552 1.69965 1.10424 1.47145 1.25994 0.87300 0.78169 0.81264 0.81500 1.21658 1.23594 1.17112 1.23211 0.94092 1.02427 0.97606 0.94044 0.94145 0.89652 0.91291 0.90883 0.89585 0.88042 0.95916 0.91311 0.84669 0.96280 0.91799 0.94886 0.93833 0.94117 0.93636 0.94261 0.94728 0.92776 0.89112 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.34 16 2 O -0.37 -4.17 10.63 -35.23 -0.37 -4.54 16 3 C 0.06 0.62 4.36 -25.92 -0.11 0.51 16 4 C -0.16 -1.73 7.48 -25.78 -0.19 -1.93 16 5 C -0.10 -1.18 3.84 -89.67 -0.34 -1.53 16 6 C 0.07 0.94 5.52 -3.83 -0.02 0.92 16 7 N -0.69 -11.70 5.90 -113.78 -0.67 -12.37 16 8 C 0.08 1.70 4.57 -3.83 -0.02 1.69 16 9 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 10 C -0.13 -2.88 7.55 37.15 0.28 -2.60 16 11 C -0.15 -3.22 7.36 37.16 0.27 -2.95 16 12 C -0.51 -14.36 8.62 -34.44 -0.30 -14.65 16 13 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 14 C 0.07 2.11 5.32 -17.82 -0.09 2.02 16 15 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 16 Si 0.88 22.26 22.79 -169.99 -3.87 18.39 16 17 H -0.29 -7.19 7.10 56.52 0.40 -6.79 16 18 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16 19 H -0.25 -5.77 4.65 56.52 0.26 -5.50 16 20 C -0.14 -1.38 7.47 -25.92 -0.19 -1.58 16 21 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 22 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 27 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 28 H 0.02 0.31 7.85 -51.93 -0.41 -0.10 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.33 5.52 6.77 -39.29 -0.27 5.25 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.03 0.68 7.88 -51.93 -0.41 0.27 16 34 H 0.04 1.04 4.30 -51.93 -0.22 0.81 16 35 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.90 2.25 -51.93 -0.12 0.79 16 38 H 0.03 0.65 6.57 -51.93 -0.34 0.31 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -30.49 311.00 -6.52 -37.00 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.35 Total: 1.73 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 0.29 Total: -17.93 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.10 Total: -39.35 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.37 Total: -4.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -3.87 Total: 18.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.49 -6.52 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664967063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.701 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds