Wall clock time and date at job start Sun Mar 29 2020 22:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99467 * 2 1 4 4 C 1.53776 * 113.61363 * 249.13459 * 3 2 1 5 5 C 1.54047 * 86.98841 * 270.83954 * 4 3 2 6 6 C 1.52997 * 113.62314 * 220.01830 * 5 4 3 7 7 N 1.46897 * 109.47618 * 272.49855 * 6 5 4 8 8 C 1.46894 * 111.00171 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47220 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47224 * 300.00094 * 9 8 7 11 11 C 1.52999 * 109.46666 * 60.00346 * 9 8 7 12 12 C 1.50706 * 109.47203 * 179.97438 * 9 8 7 13 13 H 1.07996 * 119.99567 * 1.36549 * 12 9 8 14 14 C 1.37878 * 119.99746 * 181.36356 * 12 9 8 15 15 N 1.31512 * 119.99803 * 193.96444 * 14 12 9 16 16 Si 1.86798 * 120.00130 * 13.96442 * 14 12 9 17 17 H 1.48498 * 109.46971 * 84.55682 * 16 14 12 18 18 H 1.48498 * 109.46798 * 204.55463 * 16 14 12 19 19 H 1.48496 * 109.46994 * 324.55567 * 16 14 12 20 20 C 1.53775 * 87.07792 * 334.57187 * 5 4 3 21 21 H 1.08995 * 109.47131 * 60.00250 * 1 2 3 22 22 H 1.08996 * 109.47098 * 299.99849 * 1 2 3 23 23 H 1.08997 * 109.46479 * 180.02562 * 1 2 3 24 24 H 1.09000 * 112.85268 * 20.33944 * 3 2 1 25 25 H 1.09002 * 113.61628 * 25.43782 * 4 3 2 26 26 H 1.09005 * 113.61251 * 156.34148 * 4 3 2 27 27 H 1.09011 * 113.68863 * 89.12565 * 5 4 3 28 28 H 1.08999 * 109.46925 * 32.50525 * 6 5 4 29 29 H 1.09004 * 109.46956 * 152.49581 * 6 5 4 30 30 H 1.00895 * 110.99663 * 56.04191 * 7 6 5 31 31 H 1.09001 * 109.47345 * 300.00136 * 8 7 6 32 32 H 1.09004 * 109.46990 * 60.00115 * 8 7 6 33 33 H 1.09005 * 109.47010 * 69.31611 * 10 9 8 34 34 H 1.09007 * 109.47134 * 189.31351 * 10 9 8 35 35 H 1.09003 * 109.47435 * 309.31360 * 10 9 8 36 36 H 1.08992 * 109.47749 * 60.00125 * 11 9 8 37 37 H 1.09006 * 109.46989 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.47279 * 299.99631 * 11 9 8 39 39 H 0.96998 * 120.00385 * 180.02562 * 15 14 12 40 40 H 1.09007 * 113.61449 * 270.87562 * 20 5 4 41 41 H 1.09004 * 113.61666 * 139.97449 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 2.7192 1.6642 -1.3166 5 6 3.9895 1.0407 -0.7079 6 6 5.2669 1.8221 -1.0216 7 7 5.8229 1.3588 -2.2999 8 6 7.0528 2.0891 -2.6346 9 6 7.6014 1.5796 -3.9689 10 6 7.9102 0.0854 -3.8562 11 6 6.5601 1.8038 -5.0673 12 6 8.8628 2.3293 -4.3126 13 1 9.2478 3.0772 -3.6354 14 6 9.5251 2.0601 -5.4916 15 7 10.7517 2.4988 -5.6716 16 14 8.6801 1.0724 -6.8331 17 1 7.8459 1.9777 -7.6635 18 1 9.7048 0.4208 -7.6879 19 1 7.8181 0.0335 -6.2144 20 6 3.3923 1.3645 0.6717 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.3219 2.0753 0.3491 25 1 2.3358 1.1218 -2.1808 26 1 2.8000 2.7372 -1.4907 27 1 4.0887 -0.0276 -0.9008 28 1 5.0350 2.8850 -1.0901 29 1 5.9963 1.6599 -0.2280 30 1 5.1423 1.4388 -3.0404 31 1 6.8329 3.1537 -2.7145 32 1 7.7947 1.9291 -1.8523 33 1 6.9778 -0.4730 -3.7728 34 1 8.4514 -0.2417 -4.7440 35 1 8.5213 -0.0936 -2.9716 36 1 6.3401 2.8683 -5.1477 37 1 6.9508 1.4404 -6.0179 38 1 5.6476 1.2619 -4.8190 39 1 11.2176 2.3098 -6.5011 40 1 3.6568 2.3557 1.0402 41 1 3.5520 0.5802 1.4117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664967063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:24 Heat of formation + Delta-G solvation = -35.677550 kcal Electronic energy + Delta-G solvation = -17840.001431 eV Core-core repulsion = 15141.347511 eV Total energy + Delta-G solvation = -2698.653920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58460 -38.86979 -37.14465 -35.04139 -33.42959 -28.88076 -27.95791 -27.32694 -27.06079 -26.59444 -25.18305 -22.93277 -20.72899 -20.19782 -18.10064 -17.63557 -17.21420 -16.62175 -16.52052 -15.99082 -15.45905 -15.28124 -14.80157 -14.74347 -14.41023 -14.06593 -13.82506 -13.75015 -13.47003 -13.27216 -12.77539 -12.60878 -12.34901 -12.28118 -12.05412 -11.88211 -11.60723 -11.56599 -11.33002 -11.03362 -10.84885 -10.56445 -10.41754 -10.29062 -9.19152 -8.29067 -6.28198 1.35408 1.39499 1.50146 2.36358 2.78797 3.07747 3.33476 3.71542 3.77856 3.91818 4.08739 4.24579 4.37093 4.45090 4.53358 4.56325 4.58338 4.60486 4.77367 4.82919 4.83404 4.86684 4.89484 4.93243 4.94261 5.04416 5.12350 5.16303 5.17005 5.31328 5.32936 5.50852 5.61274 5.76836 5.87582 6.24571 6.35162 6.36221 6.63451 6.79298 7.37205 8.88283 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047722 B = 0.004474 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.594913 B = 6256.229478 C = 6548.040824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.064 3.936 4 C -0.156 4.156 5 C -0.098 4.098 6 C 0.069 3.931 7 N -0.688 5.688 8 C 0.097 3.903 9 C 0.034 3.966 10 C -0.121 4.121 11 C -0.146 4.146 12 C -0.515 4.515 13 H 0.029 0.971 14 C 0.016 3.984 15 N -0.949 5.949 16 Si 0.943 3.057 17 H -0.281 1.281 18 H -0.315 1.315 19 H -0.214 1.214 20 C -0.130 4.130 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.341 0.659 31 H 0.013 0.987 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.263 0.737 40 H 0.106 0.894 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.951 -3.147 10.713 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.006 3.994 4 C -0.194 4.194 5 C -0.117 4.117 6 C -0.060 4.060 7 N -0.320 5.320 8 C -0.032 4.032 9 C 0.033 3.967 10 C -0.179 4.179 11 C -0.203 4.203 12 C -0.553 4.553 13 H 0.047 0.953 14 C -0.181 4.181 15 N -0.589 5.589 16 Si 0.773 3.227 17 H -0.209 1.209 18 H -0.245 1.245 19 H -0.138 1.138 20 C -0.168 4.168 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.112 0.888 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.375 -3.832 10.914 24.304 hybrid contribution 0.051 1.040 -1.128 1.535 sum -21.324 -2.792 9.787 23.628 Atomic orbital electron populations 1.22972 0.79579 1.03682 1.00836 1.87868 1.21346 1.27517 1.94705 1.23094 0.94679 0.85036 0.96598 1.23615 0.96463 1.01397 0.97877 1.22464 0.92488 0.99849 0.96919 1.21974 0.95870 0.96248 0.91903 1.60518 1.07191 1.58925 1.05372 1.21622 0.91227 0.93688 0.96640 1.18483 0.92432 0.93442 0.92368 1.21983 0.99791 0.96814 0.99299 1.22274 0.99057 1.00684 0.98274 1.21233 1.08211 1.21164 1.04681 0.95307 1.25824 0.94558 0.96718 1.01033 1.70112 1.12336 1.49634 1.26798 0.86343 0.77337 0.80684 0.78299 1.20880 1.24479 1.13791 1.23220 0.94054 1.03150 0.96344 0.93405 0.92768 0.88806 0.89163 0.91547 0.88528 0.89914 0.94983 0.91851 0.83992 0.96851 0.93302 0.92404 0.95028 0.94853 0.93533 0.95232 0.91248 0.92820 0.87524 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 113.37 1.23 1.56 16 2 O -0.40 -8.08 10.63 -148.98 -1.58 -9.67 16 3 C 0.06 1.11 4.36 31.12 0.14 1.25 16 4 C -0.16 -2.97 7.48 31.21 0.23 -2.73 16 5 C -0.10 -2.20 3.84 -10.18 -0.04 -2.23 16 6 C 0.07 1.80 5.52 86.30 0.48 2.28 16 7 N -0.69 -21.86 5.90 -513.90 -3.03 -24.89 16 8 C 0.10 3.85 4.57 86.30 0.39 4.24 16 9 C 0.03 1.53 0.57 -52.93 -0.03 1.50 16 10 C -0.12 -5.29 7.55 71.98 0.54 -4.75 16 11 C -0.15 -5.91 7.36 71.98 0.53 -5.38 16 12 C -0.51 -29.37 8.62 25.60 0.22 -29.15 16 13 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 14 C 0.02 0.91 5.32 84.66 0.45 1.36 16 15 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 16 Si 0.94 45.50 22.79 68.60 1.56 47.06 16 17 H -0.28 -13.16 7.10 99.48 0.71 -12.46 16 18 H -0.32 -15.52 7.11 99.48 0.71 -14.82 16 19 H -0.21 -9.20 4.65 99.48 0.46 -8.74 16 20 C -0.13 -2.34 7.47 31.12 0.23 -2.11 16 21 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 1.19 7.88 -2.39 -0.02 1.17 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.10 1.64 7.90 -2.38 -0.02 1.62 16 27 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.03 0.79 7.85 -2.39 -0.02 0.77 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.34 10.15 6.77 -89.70 -0.61 9.55 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.06 2.22 7.88 -2.38 -0.02 2.20 16 34 H 0.03 1.43 4.30 -2.38 -0.01 1.42 16 35 H 0.03 1.46 8.12 -2.39 -0.02 1.44 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.03 1.26 2.25 -2.38 -0.01 1.25 16 38 H 0.07 2.32 6.57 -2.39 -0.02 2.30 16 39 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.11 1.58 8.10 -2.38 -0.02 1.56 16 41 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -66.44 311.00 1.76 -64.67 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.14 Total: 17.11 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 4.38 Total: -34.16 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -2.73 Total: -85.03 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.58 Total: -9.67 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.56 Total: 47.06 kcal Total: -66.44 1.76 -64.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664967063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.997 kcal (2) G-P(sol) polarization free energy of solvation -66.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds