Wall clock time and date at job start Sun Mar 29 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.46847 * 2 1 4 4 C 1.46900 * 111.00233 * 76.23972 * 3 2 1 5 5 C 1.52994 * 109.47366 * 200.37007 * 4 3 2 6 6 H 1.09001 * 110.32908 * 51.18500 * 5 4 3 7 7 C 1.54478 * 110.37490 * 173.43654 * 5 4 3 8 8 C 1.54511 * 104.06088 * 142.92150 * 7 5 4 9 9 C 1.54475 * 104.06561 * 359.97438 * 8 7 5 10 10 O 1.44428 * 104.89805 * 335.96783 * 9 8 7 11 11 C 1.46902 * 110.99655 * 200.18658 * 3 2 1 12 12 H 1.08999 * 109.47338 * 187.28002 * 11 3 2 13 13 C 1.53001 * 109.47728 * 307.28465 * 11 3 2 14 14 C 1.53008 * 109.46927 * 67.28416 * 11 3 2 15 15 C 1.50703 * 109.47075 * 64.99773 * 14 11 3 16 16 H 1.08000 * 119.99949 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00136 * 180.02562 * 15 14 11 18 18 N 1.31522 * 119.99657 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00295 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47236 * 90.00043 * 19 17 15 21 21 H 1.48497 * 109.47123 * 209.99957 * 19 17 15 22 22 H 1.48507 * 109.46879 * 329.99823 * 19 17 15 23 23 H 1.09004 * 109.47496 * 302.79815 * 1 2 3 24 24 H 1.09003 * 109.47442 * 62.79684 * 1 2 3 25 25 H 1.08999 * 109.47367 * 182.79699 * 1 2 3 26 26 H 1.09000 * 109.46888 * 239.99975 * 2 1 3 27 27 H 1.08997 * 109.46849 * 120.00068 * 2 1 3 28 28 H 1.08999 * 109.47516 * 80.36808 * 4 3 2 29 29 H 1.09005 * 109.46590 * 320.36835 * 4 3 2 30 30 H 1.08998 * 110.51105 * 24.27584 * 7 5 4 31 31 H 1.08999 * 110.51014 * 261.56398 * 7 5 4 32 32 H 1.09007 * 110.50778 * 241.35573 * 8 7 5 33 33 H 1.09000 * 110.51135 * 118.65157 * 8 7 5 34 34 H 1.09003 * 110.36853 * 94.85141 * 9 8 7 35 35 H 1.08999 * 110.37623 * 217.08338 * 9 8 7 36 36 H 1.09000 * 109.46773 * 300.00246 * 13 11 3 37 37 H 1.08996 * 109.46595 * 59.99475 * 13 11 3 38 38 H 1.08991 * 109.47118 * 179.97438 * 13 11 3 39 39 H 1.09001 * 109.46814 * 184.99587 * 14 11 3 40 40 H 1.08997 * 109.47022 * 304.99703 * 14 11 3 41 41 H 0.97000 * 119.99371 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8875 1.9901 1.3321 5 6 1.9113 3.5145 1.2044 6 1 1.1895 3.8432 0.4566 7 6 1.6099 4.1733 2.5688 8 6 2.5257 5.4174 2.5954 9 6 3.2726 5.3628 1.2443 10 8 3.2399 3.9715 0.8579 11 6 3.4086 1.4522 -0.4733 12 1 3.7886 2.4654 -0.3421 13 6 4.2696 0.4765 0.3315 14 6 3.4612 1.0758 -1.9554 15 6 2.7147 2.1067 -2.7623 16 1 2.2496 2.9466 -2.2675 17 6 2.6254 1.9778 -4.1321 18 7 3.1913 0.9547 -4.7345 19 14 1.7006 3.2559 -5.1323 20 1 2.6356 4.3336 -5.5439 21 1 1.1215 2.6151 -6.3402 22 1 0.6096 3.8351 -4.3079 23 1 -0.3634 0.5567 0.8638 24 1 -0.3634 0.4698 -0.9140 25 1 -0.3634 -1.0264 0.0501 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 2.7153 1.6654 1.9624 29 1 0.9446 1.6777 1.7811 30 1 1.8624 3.4955 3.3842 31 1 0.5623 4.4688 2.6271 32 1 3.2311 5.3547 3.4241 33 1 1.9309 6.3280 2.6671 34 1 2.7597 5.9748 0.5023 35 1 4.3023 5.6987 1.3661 36 1 4.2321 0.7446 1.3873 37 1 3.8896 -0.5366 0.2002 38 1 5.3001 0.5262 -0.0200 39 1 4.4998 1.0393 -2.2843 40 1 3.0001 0.0987 -2.0987 41 1 3.1287 0.8642 -5.6982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:31 Heat of formation + Delta-G solvation = -51.719058 kcal Electronic energy + Delta-G solvation = -18828.765434 eV Core-core repulsion = 16129.415902 eV Total energy + Delta-G solvation = -2699.349532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.34023 -37.50515 -33.02955 -31.94123 -31.29813 -30.86734 -27.88340 -27.06730 -24.68339 -22.97778 -22.11190 -21.16633 -20.68293 -18.43284 -16.29915 -16.04570 -15.55049 -15.30582 -14.80861 -14.55828 -14.14254 -13.66842 -13.51463 -12.88905 -12.57303 -12.05097 -11.81464 -11.73152 -11.60908 -11.57804 -11.37277 -11.14304 -10.91123 -10.86027 -10.73024 -10.48928 -10.46986 -10.31529 -10.07724 -9.62066 -9.37239 -8.98585 -8.78980 -8.14319 -7.34451 -5.77968 -3.73837 3.44695 3.50316 3.55393 4.19047 4.51958 4.65292 4.74357 4.94383 5.11006 5.36611 5.47271 5.58599 5.59319 5.67018 5.71621 5.77823 5.84607 5.90817 5.95065 5.97941 6.05652 6.07485 6.10594 6.18489 6.26565 6.29969 6.41308 6.64478 6.73348 6.82552 6.98228 7.16407 7.31731 7.70561 7.82300 8.09249 8.20622 8.25990 8.73580 9.32364 9.86487 11.34446 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.008495 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.684962 B = 3295.119721 C = 3915.254451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.509 5.509 4 C 0.056 3.944 5 C 0.084 3.916 6 H 0.078 0.922 7 C -0.151 4.151 8 C -0.154 4.154 9 C 0.041 3.959 10 O -0.355 6.355 11 C 0.079 3.921 12 H 0.096 0.904 13 C -0.180 4.180 14 C 0.030 3.970 15 C -0.478 4.478 16 H 0.060 0.940 17 C 0.047 3.953 18 N -0.907 5.907 19 Si 0.887 3.113 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.275 1.275 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.018 0.982 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 4.258 15.055 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 N -0.232 5.232 4 C -0.073 4.073 5 C 0.026 3.974 6 H 0.095 0.905 7 C -0.189 4.189 8 C -0.191 4.191 9 C -0.036 4.036 10 O -0.274 6.274 11 C -0.028 4.028 12 H 0.114 0.886 13 C -0.239 4.239 14 C -0.007 4.007 15 C -0.517 4.517 16 H 0.078 0.922 17 C -0.151 4.151 18 N -0.549 5.549 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.200 1.200 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.148 4.321 14.449 15.406 hybrid contribution -0.160 0.345 0.026 0.382 sum -3.309 4.666 14.475 15.564 Atomic orbital electron populations 1.21756 0.96092 1.00090 1.02074 1.22044 0.95089 0.90109 1.00468 1.62110 1.22607 1.17042 1.21413 1.22195 1.00391 0.92546 0.92123 1.23086 0.85612 0.94690 0.94046 0.90452 1.22971 1.00011 0.97131 0.98793 1.22917 0.98926 0.98378 0.98916 1.23344 1.00765 0.85373 0.94150 1.89306 1.31371 1.23028 1.83724 1.22151 0.84354 0.99281 0.97042 0.88621 1.22488 1.01345 1.00580 0.99474 1.19201 0.96674 0.96879 0.87898 1.21181 1.31335 1.08307 0.90869 0.92159 1.25007 0.96362 0.95642 0.98110 1.69975 1.45979 1.29850 1.09063 0.86671 0.80185 0.81868 0.79688 1.21136 1.21713 1.20024 0.93798 0.91589 0.93467 0.89689 0.96341 0.94484 0.90687 0.91078 0.90839 0.91183 0.91038 0.92507 0.89703 0.94326 0.93448 0.92818 0.96636 0.96594 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 10.06 37.16 0.37 -1.88 16 2 C 0.05 0.92 4.23 -3.83 -0.02 0.90 16 3 N -0.51 -9.96 4.01 -226.65 -0.91 -10.87 16 4 C 0.06 0.90 4.42 -3.83 -0.02 0.89 16 5 C 0.08 1.31 3.46 -25.96 -0.09 1.22 16 6 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 7 C -0.15 -1.76 6.63 -25.16 -0.17 -1.93 16 8 C -0.15 -1.66 7.09 -25.16 -0.18 -1.84 16 9 C 0.04 0.55 7.62 37.93 0.29 0.84 16 10 O -0.36 -6.22 8.73 -35.23 -0.31 -6.53 16 11 C 0.08 1.72 2.14 -67.71 -0.14 1.57 16 12 H 0.10 2.21 5.28 -51.93 -0.27 1.94 16 13 C -0.18 -3.38 8.53 37.16 0.32 -3.06 16 14 C 0.03 0.81 4.41 -27.88 -0.12 0.68 16 15 C -0.48 -13.81 8.84 -34.44 -0.30 -14.12 16 16 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 17 C 0.05 1.39 5.46 -17.82 -0.10 1.30 16 18 N -0.91 -28.04 13.29 55.43 0.74 -27.30 16 19 Si 0.89 22.63 29.54 -169.99 -5.02 17.60 16 20 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.04 0.62 6.73 -51.93 -0.35 0.27 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.76 5.82 -51.93 -0.30 1.46 16 27 H 0.02 0.30 7.35 -51.93 -0.38 -0.08 16 28 H 0.04 0.60 6.24 -51.93 -0.32 0.27 16 29 H 0.07 1.06 6.49 -51.93 -0.34 0.72 16 30 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.66 6.51 -51.93 -0.34 0.32 16 37 H 0.05 0.86 6.73 -51.93 -0.35 0.51 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.44 6.14 -51.93 -0.32 0.13 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -31.31 312.41 -8.10 -39.41 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.15 Total: -1.60 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.16 Total: -15.43 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.17 Total: -38.17 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.31 Total: -6.53 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.31 -8.10 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.305 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds