Wall clock time and date at job start Sun Mar 29 2020 22:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00174 * 2 1 4 4 C 1.50700 * 109.47067 * 293.95772 * 3 2 1 5 5 H 1.07999 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99944 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99870 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00253 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47155 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47356 * 119.99857 * 8 6 4 11 11 H 1.48504 * 109.47227 * 240.00106 * 8 6 4 12 12 C 1.46902 * 110.99976 * 123.96014 * 2 1 3 13 13 C 1.50700 * 109.47135 * 66.04225 * 12 2 1 14 14 C 1.38814 * 120.81179 * 90.00511 * 13 12 2 15 15 F 1.35106 * 120.42791 * 0.24691 * 14 13 12 16 16 C 1.38455 * 119.14000 * 179.97438 * 14 13 12 17 17 N 1.31842 * 120.78095 * 359.97438 * 16 14 13 18 18 C 1.31842 * 121.78092 * 359.97438 * 17 16 14 19 19 C 1.38460 * 120.77842 * 0.02734 * 18 17 16 20 20 F 1.35100 * 120.42774 * 179.97438 * 19 18 17 21 21 H 1.09009 * 109.46934 * 296.04555 * 1 2 3 22 22 H 1.09003 * 109.47375 * 56.03898 * 1 2 3 23 23 H 1.09003 * 109.47549 * 176.04732 * 1 2 3 24 24 H 1.09001 * 109.46919 * 53.95495 * 3 2 1 25 25 H 1.09004 * 109.47037 * 173.95586 * 3 2 1 26 26 H 0.97008 * 120.00081 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46708 * 306.03906 * 12 2 1 28 28 H 1.09000 * 109.46858 * 186.04158 * 12 2 1 29 29 H 1.07998 * 119.60663 * 179.97438 * 16 14 13 30 30 H 1.07992 * 119.61572 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0014 -0.6154 8 14 1.5839 4.1865 -3.1385 9 1 0.8154 3.2444 -3.9912 10 1 0.7569 5.3881 -2.8599 11 1 2.8258 4.5930 -3.8439 12 6 1.9954 -0.7661 1.1375 13 6 1.6368 -2.2205 0.9727 14 6 2.4848 -3.0902 0.3007 15 9 3.6523 -2.6461 -0.2141 16 6 2.1213 -4.4197 0.1699 17 7 0.9864 -4.8617 0.6747 18 6 0.1567 -4.0657 1.3199 19 6 0.4514 -2.7236 1.4909 20 9 -0.4042 -1.9142 2.1528 21 1 -0.3633 0.4513 0.9234 22 1 -0.3634 0.5741 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0798 1.3443 0.1082 26 1 2.9875 4.9176 -0.7773 27 1 1.5611 -0.3873 2.0627 28 1 3.0797 -0.6613 1.1755 29 1 2.7752 -5.1028 -0.3518 30 1 -0.7636 -4.4649 1.7196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929810177.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:01 Heat of formation + Delta-G solvation = -48.592057 kcal Electronic energy + Delta-G solvation = -17234.918663 eV Core-core repulsion = 14087.525112 eV Total energy + Delta-G solvation = -3147.393551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.09880 -48.92944 -40.02906 -36.84625 -33.20637 -32.03891 -30.73660 -27.68616 -27.00421 -24.51853 -23.53115 -22.27298 -20.38569 -18.12214 -18.09944 -16.79400 -16.43011 -16.12918 -15.82792 -15.31427 -14.88629 -14.38161 -14.31819 -13.94905 -13.66685 -13.43127 -13.19998 -12.39781 -12.20853 -11.98318 -11.49827 -11.18025 -10.94775 -10.74520 -10.55362 -10.08556 -9.90509 -9.55018 -9.25080 -8.99201 -8.48721 -7.42179 -6.07507 -4.09110 0.66233 0.81278 3.28875 3.31939 3.36333 3.41424 3.73019 4.00032 4.23301 4.37486 4.48455 4.51092 4.95962 5.03538 5.28862 5.37118 5.58096 5.66161 5.88623 5.94135 6.03216 6.26621 6.45277 6.65972 7.15208 7.22699 7.51239 7.70516 7.95408 8.06769 8.42559 8.97925 9.55222 11.03516 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.034837 B = 0.006070 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.561702 B = 4611.499508 C = 4918.037803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.532 5.532 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.087 3.913 13 C -0.093 4.093 14 C 0.100 3.900 15 F -0.112 7.112 16 C 0.057 3.943 17 N -0.437 5.437 18 C 0.057 3.943 19 C 0.082 3.918 20 F -0.119 7.119 21 H 0.018 0.982 22 H 0.078 0.922 23 H 0.039 0.961 24 H -0.005 1.005 25 H 0.033 0.967 26 H 0.261 0.739 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -14.673 4.541 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.256 5.256 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.041 4.041 13 C -0.103 4.103 14 C 0.077 3.923 15 F -0.091 7.091 16 C -0.101 4.101 17 N -0.144 5.144 18 C -0.102 4.102 19 C 0.060 3.940 20 F -0.098 7.098 21 H 0.036 0.964 22 H 0.097 0.903 23 H 0.058 0.942 24 H 0.012 0.988 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.191 0.809 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.787 -15.532 4.047 16.291 hybrid contribution -0.174 2.130 0.051 2.138 sum -2.962 -13.402 4.098 14.324 Atomic orbital electron populations 1.22302 0.88504 0.99393 1.01135 1.62243 1.07324 1.18238 1.37829 1.19788 0.95547 0.80715 0.97078 1.21154 1.34999 0.96947 1.01546 0.91737 1.24987 0.95202 0.97291 0.97100 1.69967 1.38269 1.11463 1.34052 0.86415 0.78196 0.79283 0.83382 1.19646 1.21057 1.20921 1.20951 1.01737 0.86726 0.94731 1.20725 0.93310 0.98842 0.97383 1.18423 0.84108 0.92892 0.96860 1.91584 1.43778 1.89765 1.83935 1.22938 0.95024 0.92338 0.99831 1.67718 1.02518 1.36616 1.07553 1.22881 1.00424 0.88251 0.98627 1.18498 0.88924 0.89602 0.96977 1.91554 1.68035 1.72489 1.77687 0.96375 0.90286 0.94207 0.98757 0.94929 0.92888 0.93476 0.89109 0.80943 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 8.30 60.06 0.50 1.20 16 2 N -0.53 -11.61 4.74 -245.81 -1.17 -12.78 16 3 C 0.19 5.03 4.72 -4.98 -0.02 5.01 16 4 C -0.51 -14.27 8.46 -34.44 -0.29 -14.56 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.09 1.58 4.85 -4.97 -0.02 1.55 16 13 C -0.09 -1.44 4.91 -104.19 -0.51 -1.95 16 14 C 0.10 1.43 7.29 -39.29 -0.29 1.14 16 15 F -0.11 -1.75 16.61 2.25 0.04 -1.72 16 16 C 0.06 0.68 11.17 -17.47 -0.20 0.49 16 17 N -0.44 -5.38 10.35 -13.14 -0.14 -5.52 16 18 C 0.06 0.66 11.17 -17.47 -0.20 0.47 16 19 C 0.08 1.13 5.99 -39.29 -0.24 0.90 16 20 F -0.12 -1.71 15.35 2.25 0.03 -1.68 16 21 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 22 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 23 H 0.04 0.71 5.92 -51.93 -0.31 0.40 16 24 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 25 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.05 0.84 7.71 -51.93 -0.40 0.44 16 28 H 0.09 1.65 7.52 -51.93 -0.39 1.26 16 29 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -30.19 267.18 -5.91 -36.10 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: -3.06 Total: -4.91 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.36 Total: -4.27 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.57 Total: -44.15 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.07 Total: -3.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.19 -5.91 -36.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929810177.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.494 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds