Wall clock time and date at job start Sun Mar 29 2020 22:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00174 * 2 1 4 4 C 1.50700 * 109.47067 * 293.95772 * 3 2 1 5 5 H 1.07999 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99944 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99870 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00253 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47155 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47356 * 119.99857 * 8 6 4 11 11 H 1.48504 * 109.47227 * 240.00106 * 8 6 4 12 12 C 1.46902 * 110.99976 * 123.96014 * 2 1 3 13 13 C 1.50700 * 109.47135 * 66.04225 * 12 2 1 14 14 C 1.38814 * 120.81179 * 90.00511 * 13 12 2 15 15 F 1.35106 * 120.42791 * 0.24691 * 14 13 12 16 16 C 1.38455 * 119.14000 * 179.97438 * 14 13 12 17 17 N 1.31842 * 120.78095 * 359.97438 * 16 14 13 18 18 C 1.31842 * 121.78092 * 359.97438 * 17 16 14 19 19 C 1.38460 * 120.77842 * 0.02734 * 18 17 16 20 20 F 1.35100 * 120.42774 * 179.97438 * 19 18 17 21 21 H 1.09009 * 109.46934 * 296.04555 * 1 2 3 22 22 H 1.09003 * 109.47375 * 56.03898 * 1 2 3 23 23 H 1.09003 * 109.47549 * 176.04732 * 1 2 3 24 24 H 1.09001 * 109.46919 * 53.95495 * 3 2 1 25 25 H 1.09004 * 109.47037 * 173.95586 * 3 2 1 26 26 H 0.97008 * 120.00081 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46708 * 306.03906 * 12 2 1 28 28 H 1.09000 * 109.46858 * 186.04158 * 12 2 1 29 29 H 1.07998 * 119.60663 * 179.97438 * 16 14 13 30 30 H 1.07992 * 119.61572 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0277 3.3491 -1.5289 7 7 2.7129 4.0014 -0.6154 8 14 1.5839 4.1865 -3.1385 9 1 0.8154 3.2444 -3.9912 10 1 0.7569 5.3881 -2.8599 11 1 2.8258 4.5930 -3.8439 12 6 1.9954 -0.7661 1.1375 13 6 1.6368 -2.2205 0.9727 14 6 2.4848 -3.0902 0.3007 15 9 3.6523 -2.6461 -0.2141 16 6 2.1213 -4.4197 0.1699 17 7 0.9864 -4.8617 0.6747 18 6 0.1567 -4.0657 1.3199 19 6 0.4514 -2.7236 1.4909 20 9 -0.4042 -1.9142 2.1528 21 1 -0.3633 0.4513 0.9234 22 1 -0.3634 0.5741 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0798 1.3443 0.1082 26 1 2.9875 4.9176 -0.7773 27 1 1.5611 -0.3873 2.0627 28 1 3.0797 -0.6613 1.1755 29 1 2.7752 -5.1028 -0.3518 30 1 -0.7636 -4.4649 1.7196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929810177.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:01 Heat of formation + Delta-G solvation = -68.830132 kcal Electronic energy + Delta-G solvation = -17235.796251 eV Core-core repulsion = 14087.525112 eV Total energy + Delta-G solvation = -3148.271140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.19000 -50.08049 -41.07974 -38.51016 -35.02743 -33.63527 -31.73820 -29.51731 -28.62719 -26.23267 -24.57484 -23.79143 -22.08693 -19.23091 -19.19440 -18.63606 -17.64722 -17.46136 -16.93769 -16.73993 -16.46562 -15.95183 -15.72785 -15.69009 -14.91636 -14.69679 -14.21920 -14.03710 -13.76899 -13.53650 -13.23845 -12.88829 -12.70009 -12.60458 -12.37342 -11.99305 -11.42683 -10.98814 -10.74900 -10.63398 -9.99409 -9.21760 -8.24710 -6.35160 -0.34383 -0.29898 1.39866 1.40572 1.54200 2.29599 2.39075 2.67679 2.95137 3.07955 3.11945 3.32105 3.39491 3.50944 3.93976 4.18975 4.31296 4.45262 4.53624 4.56767 4.63727 4.77878 4.93909 5.08385 5.17753 5.43085 5.58155 5.94602 6.14037 6.42994 6.52824 6.79232 7.34517 8.86901 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.034837 B = 0.006070 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.561702 B = 4611.499508 C = 4918.037803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.090 3.910 13 C -0.111 4.111 14 C 0.083 3.917 15 F -0.125 7.125 16 C 0.076 3.924 17 N -0.439 5.439 18 C 0.077 3.923 19 C 0.074 3.926 20 F -0.125 7.125 21 H 0.017 0.983 22 H 0.063 0.937 23 H 0.065 0.935 24 H -0.032 1.032 25 H 0.008 0.992 26 H 0.266 0.734 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.206 0.794 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 -16.381 3.745 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.265 5.265 3 C 0.083 3.917 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.203 1.203 12 C -0.038 4.038 13 C -0.120 4.120 14 C 0.061 3.939 15 F -0.104 7.104 16 C -0.082 4.082 17 N -0.146 5.146 18 C -0.082 4.082 19 C 0.052 3.948 20 F -0.103 7.103 21 H 0.035 0.965 22 H 0.081 0.919 23 H 0.083 0.917 24 H -0.014 1.014 25 H 0.026 0.974 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.223 0.777 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.846 -17.266 3.259 17.987 hybrid contribution 0.151 2.565 0.365 2.595 sum -3.695 -14.701 3.625 15.586 Atomic orbital electron populations 1.22229 0.87289 1.00636 1.00335 1.62115 1.08442 1.15873 1.40055 1.19424 0.93886 0.82878 0.95559 1.21443 1.35166 0.97581 1.02175 0.91878 1.25916 0.94859 0.97953 1.00811 1.70087 1.39157 1.11970 1.36165 0.85297 0.78133 0.78182 0.78783 1.18795 1.20233 1.20282 1.20846 1.01125 0.88439 0.93408 1.20562 0.94920 0.97183 0.99381 1.18644 0.83843 0.93838 0.97581 1.91550 1.44511 1.90059 1.84263 1.23401 0.94946 0.91490 0.98371 1.67881 1.02627 1.36416 1.07677 1.23410 1.01024 0.86948 0.96776 1.18619 0.88349 0.90466 0.97405 1.91542 1.68068 1.72847 1.77862 0.96463 0.91853 0.91674 1.01411 0.97439 0.92539 0.93501 0.89967 0.77736 0.77557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.73 8.30 127.69 1.06 2.79 16 2 N -0.54 -24.10 4.74 -931.61 -4.42 -28.52 16 3 C 0.21 11.29 4.72 85.56 0.40 11.69 16 4 C -0.53 -30.11 8.46 25.60 0.22 -29.89 16 5 H 0.06 3.56 7.12 -2.91 -0.02 3.54 16 6 C 0.00 0.16 5.46 84.65 0.46 0.62 16 7 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 8 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 9 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.09 3.34 4.85 85.56 0.42 3.75 16 13 C -0.11 -3.35 4.91 -19.59 -0.10 -3.45 16 14 C 0.08 2.28 7.29 22.46 0.16 2.45 16 15 F -0.13 -3.88 16.61 44.97 0.75 -3.14 16 16 C 0.08 1.60 11.17 84.74 0.95 2.54 16 17 N -0.44 -9.24 10.35 -195.49 -2.02 -11.26 16 18 C 0.08 1.52 11.17 84.74 0.95 2.47 16 19 C 0.07 1.89 5.99 22.46 0.13 2.03 16 20 F -0.12 -3.39 15.35 44.97 0.69 -2.70 16 21 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 22 H 0.06 2.71 6.76 -2.39 -0.02 2.69 16 23 H 0.06 2.25 5.92 -2.39 -0.01 2.24 16 24 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 25 H 0.01 0.44 7.93 -2.39 -0.02 0.42 16 26 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 27 H 0.05 1.72 7.71 -2.39 -0.02 1.70 16 28 H 0.08 3.13 7.52 -2.39 -0.02 3.11 16 29 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.21 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -65.29 267.18 3.12 -62.17 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: 1.16 Total: -1.98 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 4.65 Total: -4.99 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -6.16 Total: -95.82 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 1.44 Total: -5.83 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.29 3.12 -62.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929810177.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.658 kcal (2) G-P(sol) polarization free energy of solvation -65.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds