Wall clock time and date at job start Sun Mar 29 2020 22:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35890 * 116.99315 * 2 1 4 4 C 1.39850 * 119.57228 * 359.97438 * 3 2 1 5 5 C 1.35981 * 120.93307 * 180.02562 * 4 3 2 6 6 C 1.40587 * 119.73595 * 359.97438 * 5 4 3 7 7 C 1.40518 * 121.22765 * 179.97438 * 6 5 4 8 8 C 1.36109 * 119.66932 * 179.06485 * 7 6 5 9 9 C 1.39370 * 120.99476 * 1.01295 * 8 7 6 10 10 C 1.36094 * 120.98004 * 359.31415 * 9 8 7 11 11 C 1.40579 * 119.65491 * 0.02562 * 10 9 8 12 12 C 1.36568 * 119.56479 * 180.02562 * 3 2 1 13 13 C 1.50700 * 120.19084 * 359.97438 * 12 3 2 14 14 C 1.50702 * 109.46869 * 90.00117 * 13 12 3 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47297 * 299.99927 * 1 2 3 24 24 H 1.08993 * 109.47140 * 60.00272 * 1 2 3 25 25 H 1.08001 * 119.52634 * 0.02562 * 4 3 2 26 26 H 1.08005 * 120.13001 * 179.97438 * 5 4 3 27 27 H 1.08008 * 120.16077 * 359.97438 * 7 6 5 28 28 H 1.08006 * 119.50313 * 180.32729 * 8 7 6 29 29 H 1.08002 * 119.51387 * 179.32841 * 9 8 7 30 30 H 1.07995 * 120.17293 * 180.02562 * 10 9 8 31 31 H 1.09004 * 109.47210 * 330.00411 * 13 12 3 32 32 H 1.08994 * 109.47551 * 210.00063 * 13 12 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 1.2753 2.3779 -0.0005 5 6 1.8635 3.6039 -0.0011 6 6 3.2658 3.7045 -0.0005 7 6 3.9065 4.9552 -0.0016 8 6 5.2661 5.0157 0.0183 9 6 6.0363 3.8542 0.0186 10 6 5.4510 2.6255 0.0130 11 6 4.0489 2.5230 0.0063 12 6 3.4101 1.2721 -0.0005 13 6 4.2257 0.0049 -0.0005 14 6 4.4970 -0.4178 -1.4214 15 1 4.1172 0.1724 -2.2423 16 6 5.2353 -1.5547 -1.6734 17 7 5.6981 -2.2732 -0.6738 18 14 5.5781 -2.0744 -3.4345 19 1 6.8436 -1.4503 -3.8975 20 1 5.7029 -3.5528 -3.4990 21 1 4.4605 -1.6334 -4.3073 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.1978 2.3043 -0.0005 26 1 1.2559 4.4968 -0.0019 27 1 3.3227 5.8639 -0.0033 28 1 5.7556 5.9784 0.0227 29 1 7.1136 3.9301 0.0236 30 1 6.0604 1.7339 0.0138 31 1 3.6740 -0.7822 0.5137 32 1 5.1709 0.1810 0.5129 33 1 6.2172 -3.0732 -0.8511 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037637310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:17 Heat of formation + Delta-G solvation = -1.992620 kcal Electronic energy + Delta-G solvation = -16797.982634 eV Core-core repulsion = 14174.546565 eV Total energy + Delta-G solvation = -2623.436069 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.105 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.13522 -38.21235 -35.05644 -33.83912 -31.99653 -29.56330 -29.19609 -27.37009 -26.22028 -23.41324 -22.56269 -21.99663 -19.88001 -17.76139 -16.62532 -16.36259 -16.20943 -15.10654 -14.97103 -14.49112 -13.98018 -13.60629 -13.22126 -13.02925 -12.72018 -12.43700 -12.17874 -11.88884 -11.34669 -11.20425 -10.96006 -10.81862 -10.75457 -10.39670 -10.20651 -10.14129 -9.58812 -9.32665 -8.83989 -8.33311 -7.87951 -6.88311 -5.94997 -3.97783 1.12193 1.58270 2.65987 3.34684 3.40549 3.45072 3.54943 3.95572 4.48706 4.73408 5.06002 5.26930 5.32446 5.36545 5.40130 5.48380 5.51038 5.67111 5.74502 5.79441 5.89475 5.96090 6.39996 6.41971 6.48251 6.66854 6.83236 6.93649 7.00797 7.06235 7.35515 7.50300 7.67605 7.84581 8.00347 8.11132 8.41256 9.05569 9.64087 11.14003 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.009415 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.718280 B = 2973.293065 C = 4098.892283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.098 3.902 4 C -0.175 4.175 5 C -0.107 4.107 6 C -0.077 4.077 7 C -0.113 4.113 8 C -0.128 4.128 9 C -0.135 4.135 10 C -0.080 4.080 11 C -0.022 4.022 12 C -0.057 4.057 13 C 0.058 3.942 14 C -0.499 4.499 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.093 0.907 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 10.986 2.293 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.209 6.209 3 C 0.054 3.946 4 C -0.194 4.194 5 C -0.125 4.125 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.146 4.146 9 C -0.154 4.154 10 C -0.097 4.097 11 C -0.022 4.022 12 C -0.057 4.057 13 C 0.021 3.979 14 C -0.538 4.538 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.111 0.889 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.435 10.627 2.331 12.640 hybrid contribution -0.143 -0.160 -1.050 1.072 sum -6.577 10.466 1.280 12.428 Atomic orbital electron populations 1.22937 0.80432 1.03207 1.00173 1.86300 1.19354 1.26375 1.88878 1.18446 0.91995 0.83764 1.00431 1.20968 0.99485 0.92729 1.06203 1.20574 0.93323 0.96729 1.01892 1.18031 0.93284 0.93147 1.03267 1.20810 0.94723 0.95943 1.01650 1.20696 0.93998 0.97980 1.01894 1.20772 0.99602 0.92521 1.02459 1.21330 0.93837 0.98355 0.96226 1.17822 0.93543 0.91505 0.99318 1.19891 0.91264 0.96774 0.97813 1.18199 0.93796 0.88054 0.97850 1.20986 1.32648 1.08814 0.91306 0.92821 1.24961 0.95958 0.96372 0.96957 1.69958 1.36515 1.16486 1.30476 0.86588 0.78627 0.77622 0.85174 1.20674 1.21229 1.19936 0.88857 0.93634 0.93456 0.86180 0.86242 0.86579 0.86929 0.86568 0.84187 0.94488 0.95231 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.80 101.05 0.99 1.40 16 2 O -0.30 -6.16 9.44 -19.39 -0.18 -6.34 16 3 C 0.10 2.06 6.61 -39.58 -0.26 1.80 16 4 C -0.18 -2.99 8.93 -39.79 -0.36 -3.35 16 5 C -0.11 -1.74 9.76 -39.51 -0.39 -2.12 16 6 C -0.08 -1.40 5.74 -106.81 -0.61 -2.01 16 7 C -0.11 -1.73 9.77 -39.49 -0.39 -2.12 16 8 C -0.13 -1.89 9.95 -39.93 -0.40 -2.29 16 9 C -0.14 -2.23 9.95 -39.93 -0.40 -2.63 16 10 C -0.08 -1.58 9.28 -39.47 -0.37 -1.95 16 11 C -0.02 -0.46 5.74 -106.84 -0.61 -1.07 16 12 C -0.06 -1.31 5.09 -104.39 -0.53 -1.84 16 13 C 0.06 1.53 4.39 -29.03 -0.13 1.41 16 14 C -0.50 -14.31 9.09 -34.44 -0.31 -14.62 16 15 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 18 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.05 0.56 7.63 -51.93 -0.40 0.16 16 24 H 0.05 0.61 7.63 -51.93 -0.40 0.21 16 25 H 0.12 1.65 6.21 -52.49 -0.33 1.32 16 26 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 27 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.14 2.97 6.36 -52.49 -0.33 2.63 16 31 H 0.04 1.06 7.48 -51.93 -0.39 0.67 16 32 H 0.03 0.80 6.41 -51.93 -0.33 0.47 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -31.75 281.30 -7.91 -39.66 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.83 Total: -0.76 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -3.86 Total: -27.81 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.18 Total: -6.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.75 -7.91 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037637310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.669 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds