Wall clock time and date at job start Sun Mar 29 2020 22:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48504 * 109.46933 * 269.99981 * 3 2 1 5 5 H 1.48495 * 109.47163 * 29.99655 * 3 2 1 6 6 H 1.48498 * 109.47404 * 150.00182 * 3 2 1 7 7 C 1.37869 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00550 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99748 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00351 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99508 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00554 * 180.02562 * 11 10 9 14 14 N 1.46897 * 109.47300 * 181.32752 * 13 11 10 15 15 C 1.46903 * 110.99924 * 162.31261 * 14 13 11 16 16 C 1.52998 * 109.47268 * 189.99756 * 15 14 13 17 17 O 1.42900 * 109.46871 * 65.00312 * 16 15 14 18 18 C 1.46901 * 111.00101 * 286.26949 * 14 13 11 19 19 C 1.52995 * 117.49745 * 3.77991 * 18 14 13 20 20 C 1.52996 * 117.49582 * 295.12098 * 18 14 13 21 21 H 0.97004 * 119.99766 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47134 * 60.00452 * 9 7 2 23 23 H 1.09001 * 109.47170 * 300.00168 * 9 7 2 24 24 H 0.97000 * 119.99907 * 0.02562 * 10 9 7 25 25 H 1.08998 * 109.47176 * 61.32547 * 13 11 10 26 26 H 1.09002 * 109.46878 * 301.32861 * 13 11 10 27 27 H 1.09002 * 109.46582 * 70.00012 * 15 14 13 28 28 H 1.09000 * 109.47560 * 310.00422 * 15 14 13 29 29 H 1.08998 * 109.47469 * 305.00757 * 16 15 14 30 30 H 1.09000 * 109.47164 * 185.00526 * 16 15 14 31 31 H 0.96706 * 114.00260 * 180.02562 * 17 16 15 32 32 H 1.08995 * 115.54951 * 149.45002 * 18 14 13 33 33 H 1.09004 * 117.50314 * 0.02562 * 19 18 14 34 34 H 1.08997 * 117.50192 * 145.02157 * 19 18 14 35 35 H 1.09001 * 117.49687 * 214.98034 * 20 18 14 36 36 H 1.09001 * 117.50096 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1049 0.0000 13 6 2.7331 -6.0287 0.0006 14 7 1.9989 -7.3007 -0.0310 15 6 2.8746 -8.4038 -0.4484 16 6 2.0314 -9.6533 -0.7103 17 8 1.1639 -9.4183 -1.8212 18 6 1.3798 -7.5836 1.2708 19 6 1.5140 -6.5206 2.3628 20 6 2.3127 -7.8228 2.4596 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5570 0.8897 24 1 3.1567 -3.4353 -0.0002 25 1 3.3439 -5.9841 0.9022 26 1 3.3754 -5.9580 -0.8773 27 1 3.5976 -8.6121 0.3403 28 1 3.4023 -8.1239 -1.3602 29 1 1.4360 -9.8817 0.1737 30 1 2.6879 -10.4944 -0.9334 31 1 0.5980 -10.1701 -2.0443 32 1 0.4522 -8.1550 1.2359 33 1 2.0613 -5.6110 2.1153 34 1 0.6750 -6.3928 3.0467 35 1 1.9987 -8.5514 3.2071 36 1 3.3858 -7.7706 2.2757 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048065387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:28 Heat of formation + Delta-G solvation = -75.130115 kcal Electronic energy + Delta-G solvation = -17710.433744 eV Core-core repulsion = 14808.810026 eV Total energy + Delta-G solvation = -2901.623717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17932 -39.24248 -37.42917 -36.03755 -34.54661 -34.28520 -31.08824 -29.27176 -27.05206 -24.55625 -24.01142 -23.05656 -21.47956 -20.50481 -18.85384 -18.52329 -17.84820 -17.45954 -17.22044 -16.59355 -15.90884 -15.79049 -15.37669 -14.66919 -14.44548 -14.31437 -14.03018 -13.99440 -13.81539 -13.10871 -12.90215 -12.81935 -12.65293 -12.31164 -12.21832 -11.86629 -11.63839 -11.47636 -11.11216 -10.79122 -10.77660 -10.62393 -9.76391 -9.13555 -8.28430 -6.45384 1.42839 1.45736 1.56828 1.87033 2.27451 2.45938 2.84752 3.03520 3.06301 3.54723 3.78331 3.92075 3.95328 4.05648 4.18134 4.31991 4.39611 4.45674 4.61849 4.66917 4.78987 4.94155 4.97097 5.11617 5.13176 5.16699 5.25894 5.51032 5.71821 5.86509 5.96646 6.15995 6.66326 7.00286 7.06699 7.24704 7.59984 8.83942 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040911 B = 0.004676 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.247046 B = 5986.330911 C = 6167.096891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.271 3.729 10 N -0.714 5.714 11 C 0.496 3.504 12 O -0.578 6.578 13 C 0.042 3.958 14 N -0.507 5.507 15 C 0.053 3.947 16 C 0.081 3.919 17 O -0.589 6.589 18 C 0.030 3.970 19 C -0.204 4.204 20 C -0.181 4.181 21 H 0.268 0.732 22 H -0.018 1.018 23 H -0.016 1.016 24 H 0.406 0.594 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.389 0.611 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.760 -18.979 2.391 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.148 3.852 10 N -0.366 5.366 11 C 0.283 3.717 12 O -0.457 6.457 13 C -0.089 4.089 14 N -0.230 5.230 15 C -0.074 4.074 16 C 0.004 3.996 17 O -0.396 6.396 18 C -0.079 4.079 19 C -0.241 4.241 20 C -0.220 4.220 21 H 0.077 0.923 22 H 0.000 1.000 23 H 0.002 0.998 24 H 0.241 0.759 25 H 0.106 0.894 26 H 0.139 0.861 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.237 0.763 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.678 -18.412 2.031 20.899 hybrid contribution 0.278 0.674 0.553 0.915 sum 9.955 -17.738 2.584 20.504 Atomic orbital electron populations 1.70152 1.08361 1.28528 1.50066 1.26088 0.95759 1.03971 0.93838 0.85143 0.78495 0.76876 0.78605 1.19606 1.20946 1.17808 1.21630 0.94300 0.90592 1.52798 0.89793 1.18456 0.88646 0.84400 0.93696 1.46185 1.10969 1.05519 1.73898 1.21240 0.90106 0.84555 0.75814 1.90641 1.19094 1.85185 1.50778 1.22026 0.94009 0.88143 1.04722 1.61465 1.33428 1.01223 1.26851 1.22368 0.93814 0.90164 1.01024 1.22238 0.92544 0.96065 0.88790 1.86611 1.56947 1.44739 1.51335 1.22604 0.99649 1.02400 0.83207 1.23220 1.03807 0.94134 1.02959 1.23541 0.98463 0.98442 1.01517 0.92286 1.00014 0.99762 0.75877 0.89443 0.86108 0.90561 0.89912 0.93365 0.90630 0.76275 0.87049 0.90313 0.89480 0.86501 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.44 0.28 -57.26 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.95 29.54 68.60 2.03 44.98 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.56 -30.91 9.28 25.60 0.24 -30.67 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.42 5.43 85.63 0.46 15.88 16 10 N -0.71 -31.37 5.55 -466.78 -2.59 -33.96 16 11 C 0.50 20.91 5.88 87.66 0.52 21.43 16 12 O -0.58 -30.32 15.22 -3.04 -0.05 -30.37 16 13 C 0.04 1.21 5.00 85.56 0.43 1.64 16 14 N -0.51 -14.54 4.29 -875.55 -3.76 -18.30 16 15 C 0.05 1.04 5.23 86.30 0.45 1.50 16 16 C 0.08 1.43 7.14 71.98 0.51 1.94 16 17 O -0.59 -13.70 13.61 -148.98 -2.03 -15.73 16 18 C 0.03 0.83 4.53 44.91 0.20 1.04 16 19 C -0.20 -6.03 8.48 30.62 0.26 -5.77 16 20 C -0.18 -3.58 9.27 30.62 0.28 -3.30 16 21 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 22 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 23 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 24 H 0.41 14.62 8.32 -92.71 -0.77 13.85 16 25 H 0.09 2.08 5.99 -2.39 -0.01 2.07 16 26 H 0.12 2.90 7.77 -2.39 -0.02 2.88 16 27 H 0.08 1.09 6.87 -2.39 -0.02 1.07 16 28 H 0.08 1.62 7.85 -2.39 -0.02 1.60 16 29 H 0.05 0.82 7.09 -2.39 -0.02 0.80 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.39 5.29 9.12 -74.05 -0.68 4.62 16 32 H 0.11 3.21 7.92 -2.39 -0.02 3.19 16 33 H 0.08 2.63 4.91 -2.38 -0.01 2.62 16 34 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.76 7.15 -2.39 -0.02 1.74 16 Total: -1.00 -79.07 298.11 -2.64 -81.70 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.35 Total: 24.62 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 3.82 Total: 4.31 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -6.06 Total: -109.52 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -2.07 Total: -46.10 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -79.07 -2.64 -81.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048065387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.573 kcal (2) G-P(sol) polarization free energy of solvation -79.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds