Wall clock time and date at job start Sun Mar 29 2020 22:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 120.00029 * 2 1 4 4 H 1.48493 * 109.47253 * 269.72786 * 3 2 1 5 5 H 1.48502 * 109.46648 * 29.73048 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.72796 * 3 2 1 7 7 C 1.38953 * 120.00133 * 179.73079 * 2 1 3 8 8 H 1.07999 * 119.99828 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00152 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00128 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99795 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47085 * 173.73585 * 12 10 9 14 14 C 1.46850 * 110.99607 * 169.40123 * 13 12 10 15 15 C 1.53042 * 109.51866 * 185.83415 * 14 13 12 16 16 C 1.53117 * 109.28285 * 300.82388 * 15 14 13 17 17 C 1.53116 * 109.16275 * 57.65183 * 16 15 14 18 18 H 1.09006 * 109.50064 * 62.28573 * 17 16 15 19 19 C 1.52996 * 109.50748 * 182.40383 * 17 16 15 20 20 O 1.42896 * 109.47128 * 294.80711 * 19 17 16 21 21 C 1.46846 * 110.99872 * 293.60716 * 13 12 10 22 22 H 0.97001 * 120.00211 * 0.26858 * 1 2 3 23 23 H 0.97006 * 120.00012 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.47284 * 293.74115 * 12 10 9 25 25 H 1.08999 * 109.46881 * 53.73445 * 12 10 9 26 26 H 1.08995 * 109.46216 * 305.85402 * 14 13 12 27 27 H 1.09004 * 109.46499 * 65.82775 * 14 13 12 28 28 H 1.08997 * 109.50108 * 180.87777 * 15 14 13 29 29 H 1.08999 * 109.53163 * 60.78544 * 15 14 13 30 30 H 1.08999 * 109.51991 * 297.74733 * 16 15 14 31 31 H 1.08997 * 109.51959 * 177.55933 * 16 15 14 32 32 H 1.09005 * 109.46814 * 54.80494 * 19 17 16 33 33 H 1.09000 * 109.47564 * 174.80454 * 19 17 16 34 34 H 0.96697 * 114.00048 * 179.97438 * 20 19 17 35 35 H 1.08994 * 109.46678 * 294.18178 * 21 13 12 36 36 H 1.09003 * 109.45964 * 54.16275 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.5014 2.0431 -1.4000 5 1 1.4427 2.6543 0.6944 6 1 3.5428 1.4418 0.7058 7 6 2.0089 -1.2033 0.0057 8 1 1.4689 -2.1386 0.0105 9 7 3.3799 -1.2033 0.0051 10 6 4.0538 -2.3705 0.0111 11 8 3.4473 -3.4210 0.0165 12 6 5.5608 -2.3706 0.0100 13 7 6.0505 -3.7464 0.1684 14 6 7.4963 -3.8219 -0.0779 15 6 7.9444 -5.2850 -0.0476 16 6 7.6082 -5.8886 1.3188 17 6 6.1041 -5.7536 1.5716 18 1 5.5561 -6.3167 0.8161 19 6 5.7684 -6.3002 2.9606 20 8 6.0286 -7.7049 2.9953 21 6 5.7093 -4.2770 1.4945 22 1 -0.4850 0.8400 -0.0039 23 1 3.8649 -0.3633 0.0004 24 1 5.9234 -1.9621 -0.9333 25 1 5.9247 -1.7581 0.8349 26 1 7.7212 -3.3932 -1.0544 27 1 8.0259 -3.2639 0.6944 28 1 9.0200 -5.3396 -0.2149 29 1 7.4260 -5.8411 -0.8286 30 1 8.1574 -5.3578 2.0965 31 1 7.8863 -6.9424 1.3298 32 1 6.3838 -5.7981 3.7071 33 1 4.7154 -6.1203 3.1772 34 1 5.8381 -8.1192 3.8480 35 1 6.2472 -3.7168 2.2592 36 1 4.6364 -4.1790 1.6597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050104343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:44 Heat of formation + Delta-G solvation = -86.078684 kcal Electronic energy + Delta-G solvation = -17862.986021 eV Core-core repulsion = 14960.887538 eV Total energy + Delta-G solvation = -2902.098483 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.43369 -37.95613 -36.53676 -34.02810 -33.17882 -31.63180 -31.33679 -27.61772 -25.68761 -24.54908 -22.76367 -21.42229 -19.59608 -19.32099 -18.24423 -17.34259 -16.02416 -15.51856 -15.20766 -14.86252 -14.73979 -14.34863 -13.92408 -13.66167 -13.27213 -12.95803 -12.82475 -12.54026 -12.33887 -11.89557 -11.74279 -11.51411 -11.12836 -10.95895 -10.59293 -10.55627 -10.32186 -10.28302 -9.96435 -9.87822 -9.51222 -8.52567 -8.16109 -7.91927 -6.29829 -3.81015 3.03012 3.07446 3.15445 3.76691 3.83408 4.11166 4.33984 4.76205 4.86965 4.95436 5.03060 5.22198 5.28639 5.42038 5.50330 5.51475 5.56403 5.62368 5.74884 5.76948 5.84953 5.92424 5.97905 6.05387 6.17930 6.23725 6.47398 6.54472 7.23651 7.36979 7.59906 7.60765 8.16305 8.62361 8.97099 9.44300 9.86090 10.83416 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034877 B = 0.005427 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.635956 B = 5157.878053 C = 5666.370169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.557 6.557 12 C 0.044 3.956 13 N -0.514 5.514 14 C 0.055 3.945 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.082 4.082 18 H 0.089 0.911 19 C 0.081 3.919 20 O -0.573 6.573 21 C 0.063 3.937 22 H 0.273 0.727 23 H 0.370 0.630 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.376 0.624 35 H 0.023 0.977 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.385 -5.929 4.586 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.238 3.762 11 O -0.438 6.438 12 C -0.088 4.088 13 N -0.238 5.238 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.101 4.101 18 H 0.107 0.893 19 C 0.003 3.997 20 O -0.377 6.377 21 C -0.065 4.065 22 H 0.083 0.917 23 H 0.202 0.798 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.222 0.778 35 H 0.041 0.959 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.701 -6.691 3.613 17.446 hybrid contribution 0.783 1.987 1.193 2.446 sum 16.484 -4.704 4.806 17.803 Atomic orbital electron populations 1.69621 1.05633 1.27446 1.49574 1.25029 0.95471 0.97926 0.97726 0.86682 0.79748 0.84110 0.78900 1.19602 1.20223 1.19567 1.19428 0.79244 0.96610 1.47959 0.86282 1.42232 1.07517 1.06149 1.67382 1.19684 0.88128 0.84527 0.83901 1.90552 1.69333 1.30794 1.53123 1.21886 0.95511 0.89596 1.01763 1.61401 1.12712 1.19611 1.30060 1.22132 0.87750 0.96938 1.00526 1.21575 1.00044 0.95566 0.98169 1.21565 0.95472 1.01016 0.96723 1.21105 0.96638 0.96004 0.96328 0.89309 1.22176 0.99242 0.81034 0.97230 1.86466 1.90418 1.22113 1.38750 1.22094 1.02966 0.93236 0.88231 0.91651 0.79772 0.89043 0.93597 0.90853 0.95374 0.91803 0.90923 0.92855 0.91391 0.94058 0.93161 0.77826 0.95870 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.41 27.73 -169.99 -4.71 14.69 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.44 6.53 56.52 0.37 -5.07 16 7 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -14.19 5.09 -10.96 -0.06 -14.25 16 10 C 0.45 10.34 7.31 -10.98 -0.08 10.26 16 11 O -0.56 -14.94 14.29 5.54 0.08 -14.86 16 12 C 0.04 0.75 5.45 -4.98 -0.03 0.73 16 13 N -0.51 -8.52 4.35 -236.11 -1.03 -9.54 16 14 C 0.05 0.70 5.46 -3.83 -0.02 0.68 16 15 C -0.12 -1.37 6.09 -26.65 -0.16 -1.53 16 16 C -0.11 -1.35 5.16 -26.61 -0.14 -1.49 16 17 C -0.08 -1.17 2.59 -90.54 -0.23 -1.41 16 18 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 19 C 0.08 1.00 6.43 37.16 0.24 1.24 16 20 O -0.57 -6.77 13.25 -35.23 -0.47 -7.23 16 21 C 0.06 1.01 4.40 -3.83 -0.02 1.00 16 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.37 7.77 5.77 -40.82 -0.24 7.54 16 24 H 0.09 1.38 7.98 -51.93 -0.41 0.96 16 25 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.38 2.62 9.12 45.56 0.42 3.04 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 1.92 6.06 -51.93 -0.31 1.61 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -33.10 291.74 -6.43 -39.54 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.73 Total: 10.58 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.69 Total: 1.77 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.31 Total: -48.87 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.39 Total: -22.10 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.10 -6.43 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050104343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.542 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds