Wall clock time and date at job start Sun Mar 29 2020 22:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 120.00029 * 2 1 4 4 H 1.48493 * 109.47253 * 269.72786 * 3 2 1 5 5 H 1.48502 * 109.46648 * 29.73048 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.72796 * 3 2 1 7 7 C 1.38953 * 120.00133 * 179.73079 * 2 1 3 8 8 H 1.07999 * 119.99828 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00152 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00128 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99795 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47085 * 173.73585 * 12 10 9 14 14 C 1.46850 * 110.99607 * 169.40123 * 13 12 10 15 15 C 1.53042 * 109.51866 * 185.83415 * 14 13 12 16 16 C 1.53117 * 109.28285 * 300.82388 * 15 14 13 17 17 C 1.53116 * 109.16275 * 57.65183 * 16 15 14 18 18 H 1.09006 * 109.50064 * 62.28573 * 17 16 15 19 19 C 1.52996 * 109.50748 * 182.40383 * 17 16 15 20 20 O 1.42896 * 109.47128 * 294.80711 * 19 17 16 21 21 C 1.46846 * 110.99872 * 293.60716 * 13 12 10 22 22 H 0.97001 * 120.00211 * 0.26858 * 1 2 3 23 23 H 0.97006 * 120.00012 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.47284 * 293.74115 * 12 10 9 25 25 H 1.08999 * 109.46881 * 53.73445 * 12 10 9 26 26 H 1.08995 * 109.46216 * 305.85402 * 14 13 12 27 27 H 1.09004 * 109.46499 * 65.82775 * 14 13 12 28 28 H 1.08997 * 109.50108 * 180.87777 * 15 14 13 29 29 H 1.08999 * 109.53163 * 60.78544 * 15 14 13 30 30 H 1.08999 * 109.51991 * 297.74733 * 16 15 14 31 31 H 1.08997 * 109.51959 * 177.55933 * 16 15 14 32 32 H 1.09005 * 109.46814 * 54.80494 * 19 17 16 33 33 H 1.09000 * 109.47564 * 174.80454 * 19 17 16 34 34 H 0.96697 * 114.00048 * 179.97438 * 20 19 17 35 35 H 1.08994 * 109.46678 * 294.18178 * 21 13 12 36 36 H 1.09003 * 109.45964 * 54.16275 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.5014 2.0431 -1.4000 5 1 1.4427 2.6543 0.6944 6 1 3.5428 1.4418 0.7058 7 6 2.0089 -1.2033 0.0057 8 1 1.4689 -2.1386 0.0105 9 7 3.3799 -1.2033 0.0051 10 6 4.0538 -2.3705 0.0111 11 8 3.4473 -3.4210 0.0165 12 6 5.5608 -2.3706 0.0100 13 7 6.0505 -3.7464 0.1684 14 6 7.4963 -3.8219 -0.0779 15 6 7.9444 -5.2850 -0.0476 16 6 7.6082 -5.8886 1.3188 17 6 6.1041 -5.7536 1.5716 18 1 5.5561 -6.3167 0.8161 19 6 5.7684 -6.3002 2.9606 20 8 6.0286 -7.7049 2.9953 21 6 5.7093 -4.2770 1.4945 22 1 -0.4850 0.8400 -0.0039 23 1 3.8649 -0.3633 0.0004 24 1 5.9234 -1.9621 -0.9333 25 1 5.9247 -1.7581 0.8349 26 1 7.7212 -3.3932 -1.0544 27 1 8.0259 -3.2639 0.6944 28 1 9.0200 -5.3396 -0.2149 29 1 7.4260 -5.8411 -0.8286 30 1 8.1574 -5.3578 2.0965 31 1 7.8863 -6.9424 1.3298 32 1 6.3838 -5.7981 3.7071 33 1 4.7154 -6.1203 3.1772 34 1 5.8381 -8.1192 3.8480 35 1 6.2472 -3.7168 2.2592 36 1 4.6364 -4.1790 1.6597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050104343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:43 Heat of formation + Delta-G solvation = -114.455851 kcal Electronic energy + Delta-G solvation = -17864.216547 eV Core-core repulsion = 14960.887538 eV Total energy + Delta-G solvation = -2903.329009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82313 -39.51332 -37.58169 -35.99370 -34.42853 -33.70980 -32.37908 -29.13674 -26.70381 -26.36001 -24.05266 -22.50270 -21.24800 -20.66088 -20.18400 -18.30488 -17.71577 -16.92240 -16.63046 -16.36298 -15.96759 -15.47090 -15.37322 -15.10114 -14.81116 -14.51506 -14.06124 -13.99878 -13.73341 -13.28525 -13.09141 -12.79553 -12.64751 -12.40891 -12.00978 -11.97812 -11.61668 -11.51937 -11.35732 -11.26324 -10.85793 -10.34293 -10.22574 -9.16913 -8.40789 -6.01528 1.30136 1.35948 1.44597 1.97134 2.23428 2.59592 3.07376 3.15857 3.55266 3.79086 3.90230 4.03397 4.16732 4.28985 4.33877 4.43090 4.45980 4.53786 4.55110 4.59692 4.71637 4.83792 4.93881 5.03459 5.11968 5.20807 5.39352 5.48704 5.54557 5.92114 6.06572 6.26057 6.61242 6.89448 6.89601 7.41014 7.99033 8.77084 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034877 B = 0.005427 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.635956 B = 5157.878053 C = 5666.370169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.232 1.232 7 C -0.327 4.327 8 H 0.054 0.946 9 N -0.593 5.593 10 C 0.450 3.550 11 O -0.606 6.606 12 C 0.055 3.945 13 N -0.542 5.542 14 C 0.055 3.945 15 C -0.114 4.114 16 C -0.102 4.102 17 C -0.082 4.082 18 H 0.051 0.949 19 C 0.085 3.915 20 O -0.586 6.586 21 C 0.068 3.932 22 H 0.279 0.721 23 H 0.389 0.611 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.396 0.604 35 H 0.044 0.956 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.408 -4.032 5.060 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.457 4.457 8 H 0.072 0.928 9 N -0.235 5.235 10 C 0.238 3.762 11 O -0.490 6.490 12 C -0.076 4.076 13 N -0.267 5.267 14 C -0.072 4.072 15 C -0.152 4.152 16 C -0.140 4.140 17 C -0.101 4.101 18 H 0.070 0.930 19 C 0.007 3.993 20 O -0.394 6.394 21 C -0.060 4.060 22 H 0.088 0.912 23 H 0.225 0.775 24 H 0.140 0.860 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.246 0.754 35 H 0.062 0.938 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.759 -4.818 4.101 20.747 hybrid contribution -0.543 1.217 1.048 1.695 sum 19.216 -3.601 5.149 20.217 Atomic orbital electron populations 1.69808 1.08176 1.29224 1.50480 1.26113 0.96447 1.02704 0.96089 0.85361 0.79443 0.76686 0.79990 1.18084 1.20039 1.15481 1.18991 0.81508 0.94873 1.50284 0.92829 1.42049 1.05788 1.07564 1.68104 1.20952 0.90905 0.83292 0.81093 1.90540 1.71279 1.32697 1.54452 1.21825 0.90207 0.90932 1.04587 1.61346 1.15596 1.19366 1.30362 1.22251 0.85122 0.97849 1.01983 1.21598 1.01644 0.94745 0.97193 1.21510 0.93431 1.01386 0.97655 1.21056 0.98125 0.94464 0.96462 0.93033 1.22075 0.98904 0.81658 0.96645 1.86411 1.90410 1.21823 1.40798 1.21936 1.00362 0.94745 0.88989 0.91170 0.77529 0.85978 0.90450 0.89368 0.93290 0.88744 0.92792 0.91033 0.91416 0.91624 0.94605 0.75390 0.93804 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.92 13.96 21.66 0.30 -56.62 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.97 38.89 27.73 68.60 1.90 40.80 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.23 -7.83 6.53 99.48 0.65 -7.18 16 7 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 8 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 9 N -0.59 -28.31 5.09 -306.98 -1.56 -29.87 16 10 C 0.45 20.75 7.31 87.66 0.64 21.39 16 11 O -0.61 -34.37 14.29 -3.08 -0.04 -34.41 16 12 C 0.06 1.75 5.45 85.56 0.47 2.22 16 13 N -0.54 -17.04 4.35 -900.92 -3.92 -20.95 16 14 C 0.05 1.20 5.46 86.33 0.47 1.68 16 15 C -0.11 -2.36 6.09 30.65 0.19 -2.17 16 16 C -0.10 -2.26 5.16 30.67 0.16 -2.10 16 17 C -0.08 -2.33 2.59 -10.74 -0.03 -2.36 16 18 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 19 C 0.09 2.06 6.43 71.98 0.46 2.53 16 20 O -0.59 -13.34 13.25 -148.98 -1.97 -15.31 16 21 C 0.07 2.16 4.40 86.33 0.38 2.54 16 22 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.39 15.30 5.77 -92.70 -0.53 14.77 16 24 H 0.12 3.15 7.98 -2.39 -0.02 3.14 16 25 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 26 H 0.09 1.69 8.01 -2.39 -0.02 1.67 16 27 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.51 7.90 -2.39 -0.02 1.49 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.40 5.03 9.12 -74.06 -0.68 4.35 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 2.13 6.06 -2.39 -0.01 2.11 16 Total: -1.00 -78.66 291.74 -1.42 -80.08 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.18 Total: 31.49 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.06 Total: 4.80 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -5.18 Total: -107.44 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -2.02 Total: -49.72 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.80 kcal Total: -78.66 -1.42 -80.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050104343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.379 kcal (2) G-P(sol) polarization free energy of solvation -78.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds