Wall clock time and date at job start Sun Mar 29 2020 22:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 O 1.42896 * 112.93849 * 48.42656 * 4 2 1 6 6 C 1.53932 * 113.73006 * 276.72719 * 4 2 1 7 7 N 1.47965 * 86.17955 * 221.91731 * 6 4 2 8 8 C 1.46902 * 110.99830 * 137.58020 * 7 6 4 9 9 C 1.50697 * 109.46890 * 70.64472 * 8 7 6 10 10 O 1.21292 * 120.00203 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99981 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00094 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00265 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99675 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00099 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99810 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46997 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47289 * 119.99756 * 16 14 12 19 19 H 1.48499 * 109.47304 * 240.00022 * 16 14 12 20 20 C 1.47963 * 90.76038 * 24.68950 * 7 6 4 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 0.96699 * 114.00411 * 180.02562 * 5 4 2 29 29 H 1.08998 * 113.76139 * 336.23677 * 6 4 2 30 30 H 1.08999 * 113.76011 * 107.60339 * 6 4 2 31 31 H 1.09005 * 109.46647 * 190.64138 * 8 7 6 32 32 H 1.08992 * 109.47496 * 310.64224 * 8 7 6 33 33 H 0.97000 * 119.99774 * 359.97438 * 11 9 8 34 34 H 0.97005 * 119.99610 * 179.97438 * 15 14 12 35 35 H 1.09003 * 113.75625 * 220.99091 * 20 7 6 36 36 H 1.08997 * 113.75552 * 89.62747 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4024 -0.2766 -2.4483 6 6 2.0909 -2.2527 -1.1031 7 7 3.3952 -2.1766 -1.7976 8 6 4.3808 -3.0636 -1.1653 9 6 4.0193 -4.4989 -1.4484 10 8 3.0370 -4.7575 -2.1112 11 7 4.7870 -5.4953 -0.9642 12 6 4.4584 -6.8011 -1.2221 13 1 3.5843 -7.0314 -1.8129 14 6 5.2502 -7.8282 -0.7233 15 7 6.3142 -7.5480 -0.0048 16 14 4.8022 -9.6074 -1.0741 17 1 3.5687 -9.6537 -1.8997 18 1 5.9140 -10.2622 -1.8092 19 1 4.5679 -10.3208 0.2071 20 6 3.5751 -0.7783 -1.3484 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.7132 -0.7229 -3.2479 29 1 2.1626 -2.5931 -0.0701 30 1 1.3206 -2.7739 -1.6714 31 1 5.3713 -2.8520 -1.5685 32 1 4.3833 -2.8951 -0.0885 33 1 5.5724 -5.2884 -0.4338 34 1 6.8667 -8.2651 0.3437 35 1 3.9906 -0.1216 -2.1127 36 1 4.0809 -0.6876 -0.3872 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084376867.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:06 Heat of formation + Delta-G solvation = -84.275136 kcal Electronic energy + Delta-G solvation = -17823.019949 eV Core-core repulsion = 14920.999674 eV Total energy + Delta-G solvation = -2902.020275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77968 -39.82674 -36.62601 -35.86883 -35.16001 -33.32270 -30.80848 -28.39689 -27.29355 -26.65417 -25.26726 -22.17945 -20.99696 -20.64832 -19.89601 -17.88152 -17.73113 -16.86391 -16.62559 -16.19592 -15.73060 -15.47225 -15.16700 -15.09913 -14.51687 -14.22330 -13.94690 -13.69959 -13.54990 -13.22717 -12.94577 -12.86875 -12.66491 -12.43899 -12.39502 -12.13692 -11.91602 -11.73723 -11.53896 -11.16061 -10.71337 -10.38477 -10.04663 -9.73404 -8.49659 -5.98639 1.34583 1.40142 1.54310 2.00988 2.26717 2.77016 3.16221 3.19058 3.24356 3.42885 3.57851 4.08167 4.16855 4.28605 4.31297 4.40573 4.44908 4.48871 4.57604 4.73173 4.81480 4.88881 4.94523 5.06769 5.11260 5.26611 5.29747 5.38428 5.46872 5.54306 5.82377 6.02103 6.56716 6.74909 7.09656 7.52096 8.07901 8.68044 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.048762 B = 0.004644 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.082204 B = 6027.934151 C = 6131.461149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.139 4.139 4 C 0.129 3.871 5 O -0.543 6.543 6 C -0.014 4.014 7 N -0.480 5.480 8 C 0.024 3.976 9 C 0.439 3.561 10 O -0.619 6.619 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.077 0.923 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.993 3.007 17 H -0.275 1.275 18 H -0.270 1.270 19 H -0.269 1.269 20 C -0.021 4.021 21 H 0.042 0.958 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.390 0.610 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.396 0.604 34 H 0.278 0.722 35 H 0.105 0.895 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 15.784 2.876 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 C -0.197 4.197 4 C 0.086 3.914 5 O -0.350 6.350 6 C -0.144 4.144 7 N -0.203 5.203 8 C -0.108 4.108 9 C 0.226 3.774 10 O -0.506 6.506 11 N -0.211 5.211 12 C -0.464 4.464 13 H 0.095 0.905 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.816 3.184 17 H -0.199 1.199 18 H -0.195 1.195 19 H -0.194 1.194 20 C -0.149 4.149 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.240 0.760 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.813 15.696 2.238 16.569 hybrid contribution 0.722 -1.532 0.454 1.753 sum -4.092 14.164 2.692 14.987 Atomic orbital electron populations 1.21680 0.94470 1.01369 1.02184 1.21142 0.96988 0.97393 0.94026 1.21756 1.01368 0.94220 1.02320 1.22626 0.90958 0.90648 0.87122 1.86329 1.66074 1.65931 1.16633 1.24605 0.93469 0.98166 0.98124 1.68334 1.02155 1.02647 1.47140 1.22340 0.98870 0.90196 0.99355 1.20753 0.85004 0.87990 0.83609 1.90492 1.30540 1.85222 1.44309 1.41948 1.26091 1.05344 1.47711 1.19683 1.11308 0.82749 1.32641 0.90502 1.26032 0.95175 1.04062 0.95839 1.69675 1.15881 1.35243 1.35284 0.84875 0.78252 0.76883 0.78344 1.19928 1.19501 1.19432 1.24907 0.97657 0.90239 1.02134 0.93912 0.91258 0.92647 0.89424 0.92802 0.91294 0.91845 0.76038 0.91153 0.91652 0.87259 0.90379 0.76985 0.91227 0.87637 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.95 71.98 0.64 -2.17 16 2 C -0.08 -1.51 2.58 -10.79 -0.03 -1.54 16 3 C -0.14 -2.23 8.98 71.98 0.65 -1.59 16 4 C 0.13 3.11 0.99 -10.15 -0.01 3.10 16 5 O -0.54 -13.71 12.61 -148.98 -1.88 -15.59 16 6 C -0.01 -0.46 6.10 86.40 0.53 0.07 16 7 N -0.48 -15.45 5.83 -915.31 -5.34 -20.79 16 8 C 0.02 0.83 5.31 85.56 0.45 1.29 16 9 C 0.44 21.29 7.59 87.66 0.67 21.95 16 10 O -0.62 -35.01 15.13 -3.07 -0.05 -35.06 16 11 N -0.57 -29.82 5.29 -306.98 -1.62 -31.44 16 12 C -0.33 -19.22 9.68 84.04 0.81 -18.41 16 13 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 15 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 16 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 C -0.02 -0.48 6.38 86.40 0.55 0.07 16 21 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.21 7.61 -2.39 -0.02 1.19 16 24 H 0.09 1.61 7.94 -2.39 -0.02 1.59 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.91 7.43 -2.39 -0.02 0.89 16 28 H 0.39 9.13 8.89 -74.06 -0.66 8.47 16 29 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 30 H 0.06 2.48 8.09 -2.39 -0.02 2.46 16 31 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 32 H 0.08 2.35 7.69 -2.39 -0.02 2.34 16 33 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 34 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 1.82 7.71 -2.39 -0.02 1.81 16 Total: -1.00 -67.69 300.02 -2.15 -69.84 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.31 Total: 34.66 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.73 Total: 2.64 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -6.68 Total: -101.69 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -1.93 Total: -50.65 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.69 -2.15 -69.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084376867.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.433 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds