Wall clock time and date at job start Sun Mar 29 2020 22:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48495 * 109.47408 * 270.00251 * 3 2 1 5 5 H 1.48506 * 109.46919 * 30.00345 * 3 2 1 6 6 H 1.48502 * 109.47301 * 150.00045 * 3 2 1 7 7 C 1.37882 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46881 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46717 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47272 * 180.02562 * 11 10 9 13 13 C 1.47012 * 110.99592 * 70.52364 * 12 11 10 14 14 C 1.53098 * 109.25509 * 182.39525 * 13 12 11 15 15 O 1.43017 * 109.26165 * 303.14851 * 14 13 12 16 16 C 1.43023 * 113.73287 * 58.67311 * 15 14 13 17 17 C 1.47005 * 111.00504 * 194.15913 * 12 11 10 18 18 H 1.09001 * 109.51006 * 297.54354 * 17 12 11 19 19 C 1.50706 * 109.54210 * 57.65496 * 17 12 11 20 20 N 1.34783 * 119.99968 * 207.97602 * 19 17 12 21 21 O 1.21279 * 120.00028 * 27.96221 * 19 17 12 22 22 H 0.97000 * 120.00471 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46797 * 60.00547 * 9 7 2 24 24 H 1.08990 * 109.47257 * 300.00009 * 9 7 2 25 25 H 1.08998 * 109.47176 * 60.00365 * 10 9 7 26 26 H 1.08998 * 109.47102 * 299.99785 * 10 9 7 27 27 H 1.09003 * 109.47371 * 60.00045 * 11 10 9 28 28 H 1.08995 * 109.47753 * 300.00211 * 11 10 9 29 29 H 1.09000 * 109.51052 * 62.46159 * 13 12 11 30 30 H 1.09000 * 109.50960 * 302.32424 * 13 12 11 31 31 H 1.09010 * 109.50633 * 183.21849 * 14 13 12 32 32 H 1.09004 * 109.50948 * 63.08986 * 14 13 12 33 33 H 1.08998 * 109.50916 * 61.26375 * 16 15 14 34 34 H 1.08997 * 109.50308 * 181.39270 * 16 15 14 35 35 H 0.96993 * 119.99731 * 359.97438 * 20 19 17 36 36 H 0.96992 * 119.99713 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1037 -0.0018 13 6 3.1259 -6.2066 1.2917 14 6 4.1511 -7.3419 1.2275 15 8 3.4874 -8.5572 0.8700 16 6 2.8043 -8.4925 -0.3849 17 6 1.7656 -7.3689 -0.3369 18 1 1.0173 -7.5971 0.4221 19 6 1.0966 -7.2445 -1.6816 20 7 0.0047 -7.9833 -1.9620 21 8 1.5405 -6.4795 -2.5114 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6047 0.8877 26 1 2.8713 -3.6039 -0.8923 27 1 0.8526 -5.0447 -0.8905 28 1 0.8546 -5.0450 0.8894 29 1 2.3995 -6.4162 2.0769 30 1 3.6357 -5.2677 1.5078 31 1 4.6256 -7.4594 2.2018 32 1 4.9081 -7.1069 0.4792 33 1 3.5221 -8.2909 -1.1800 34 1 2.3048 -9.4421 -0.5767 35 1 -0.3503 -8.5953 -1.2985 36 1 -0.4261 -7.9030 -2.8273 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092228607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:17 Heat of formation + Delta-G solvation = -115.435395 kcal Electronic energy + Delta-G solvation = -17920.610433 eV Core-core repulsion = 15017.238948 eV Total energy + Delta-G solvation = -2903.371486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51166 -39.52071 -37.41555 -35.51598 -34.77283 -33.32816 -32.25772 -29.59242 -27.14356 -25.92707 -24.27753 -22.70666 -21.77115 -20.97828 -18.72274 -18.39433 -17.97770 -17.47424 -17.05615 -16.51802 -16.28973 -15.97459 -15.58918 -15.30506 -15.02800 -14.86427 -14.29723 -13.98519 -13.64790 -13.32674 -12.96696 -12.70009 -12.54679 -12.45411 -12.22094 -11.84923 -11.45457 -11.41915 -11.21875 -11.07270 -10.68164 -10.62061 -10.56954 -9.41922 -8.22037 -6.33528 1.38487 1.40953 1.50618 1.51992 2.30823 2.39885 2.64089 2.99627 3.10871 3.71086 3.86568 3.92331 3.96847 4.09674 4.21591 4.34754 4.40604 4.58832 4.65250 4.67656 4.75598 4.90667 4.96413 5.00340 5.19457 5.47325 5.68486 5.78808 5.82583 5.87940 5.93379 6.03743 6.23428 6.44442 6.82290 7.32286 7.35651 8.90290 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.005275 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.223743 B = 5307.164338 C = 5927.207934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.083 4.083 11 C 0.070 3.930 12 N -0.532 5.532 13 C 0.015 3.985 14 C 0.065 3.935 15 O -0.384 6.384 16 C 0.082 3.918 17 C 0.028 3.972 18 H 0.087 0.913 19 C 0.518 3.482 20 N -0.833 5.833 21 O -0.568 6.568 22 H 0.264 0.736 23 H -0.017 1.017 24 H -0.006 1.006 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.419 0.581 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -20.727 2.183 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.121 4.121 11 C -0.058 4.058 12 N -0.258 5.258 13 C -0.112 4.112 14 C -0.012 4.012 15 O -0.302 6.302 16 C 0.005 3.995 17 C -0.084 4.084 18 H 0.104 0.896 19 C 0.301 3.699 20 N -0.399 5.399 21 O -0.446 6.446 22 H 0.073 0.927 23 H 0.001 0.999 24 H 0.013 0.987 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.251 0.749 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.628 -20.179 1.547 20.561 hybrid contribution -1.052 1.094 0.164 1.527 sum 2.575 -19.085 1.711 19.334 Atomic orbital electron populations 1.70098 1.07870 1.27849 1.51641 1.26019 0.95821 1.03485 0.94553 0.85401 0.78721 0.78148 0.78496 1.19928 1.20368 1.18541 1.21666 0.93514 0.92305 1.50685 0.92273 1.18942 0.94330 0.93210 0.94449 1.21307 0.97938 0.92466 1.00425 1.22029 0.93516 0.90704 0.99516 1.61976 1.29847 1.02127 1.31842 1.22968 0.97955 1.01399 0.88929 1.22841 0.93257 0.82348 1.02720 1.87978 1.69094 1.35199 1.37964 1.22613 0.93049 0.97280 0.86596 1.22430 0.98129 0.93030 0.94810 0.89567 1.20513 0.80926 0.79514 0.88912 1.43684 1.29771 1.44821 1.21594 1.90796 1.65205 1.38377 1.50211 0.92696 0.99891 0.98717 0.92395 0.93987 0.92665 0.94814 0.93232 0.89162 0.85435 0.92280 0.92739 0.84722 0.74943 0.75838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.75 13.29 21.45 0.28 -58.46 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -32.64 9.11 25.60 0.23 -32.41 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.60 4.97 29.85 0.15 1.75 16 10 C -0.08 -3.81 5.18 30.60 0.16 -3.65 16 11 C 0.07 2.68 4.64 86.30 0.40 3.08 16 12 N -0.53 -16.66 4.24 -874.41 -3.71 -20.37 16 13 C 0.02 0.39 5.46 86.31 0.47 0.86 16 14 C 0.06 1.33 7.01 72.01 0.50 1.84 16 15 O -0.38 -8.15 10.83 -148.98 -1.61 -9.76 16 16 C 0.08 1.62 6.27 72.01 0.45 2.07 16 17 C 0.03 0.68 2.37 44.18 0.10 0.79 16 18 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 19 C 0.52 13.85 6.04 87.66 0.53 14.38 16 20 N -0.83 -13.18 8.87 -173.52 -1.54 -14.72 16 21 O -0.57 -21.92 16.40 -3.03 -0.05 -21.97 16 22 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 23 H -0.02 -1.08 8.14 -2.38 -0.02 -1.09 16 24 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.06 2.47 6.66 -2.39 -0.02 2.45 16 26 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 2.33 5.97 -2.39 -0.01 2.32 16 28 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 2.46 6.56 -2.39 -0.02 2.44 16 31 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 3.35 8.83 -92.71 -0.82 2.53 16 36 H 0.41 5.89 8.93 -92.71 -0.83 5.07 16 Total: -1.00 -77.99 295.35 -1.70 -79.69 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -0.56 Total: 8.76 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 3.46 Total: -10.91 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.96 Total: -93.55 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.66 Total: -31.73 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.99 -1.70 -79.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092228607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.749 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds