Wall clock time and date at job start Sun Mar 29 2020 22:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.50273 * 2 1 4 4 C 1.53119 * 109.50522 * 120.08328 * 2 1 3 5 5 C 1.53124 * 109.16195 * 177.59568 * 4 2 1 6 6 C 1.53032 * 109.27564 * 302.34691 * 5 4 2 7 7 N 1.46845 * 109.53033 * 59.18041 * 6 5 4 8 8 C 1.46894 * 111.00376 * 174.16109 * 7 6 5 9 9 C 1.50701 * 109.47163 * 293.94983 * 8 7 6 10 10 O 1.21297 * 119.99710 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00255 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00029 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00147 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99996 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00314 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99879 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47178 * 90.00315 * 16 14 12 18 18 H 1.48503 * 109.47070 * 210.00057 * 16 14 12 19 19 H 1.48491 * 109.47218 * 329.99680 * 16 14 12 20 20 C 1.46851 * 111.19492 * 298.25733 * 7 6 5 21 21 H 1.09002 * 109.47153 * 299.91675 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.91865 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.91847 * 1 2 3 24 24 H 0.96697 * 113.99585 * 60.00474 * 3 2 1 25 25 H 1.09000 * 109.51847 * 297.49936 * 4 2 1 26 26 H 1.08998 * 109.52610 * 57.62576 * 4 2 1 27 27 H 1.08998 * 109.50014 * 62.28108 * 5 4 2 28 28 H 1.08998 * 109.50550 * 182.40023 * 5 4 2 29 29 H 1.09004 * 109.46047 * 179.19645 * 6 5 4 30 30 H 1.09000 * 109.46395 * 299.17018 * 6 5 4 31 31 H 1.09000 * 109.47038 * 53.95210 * 8 7 6 32 32 H 1.08998 * 109.47225 * 173.95349 * 8 7 6 33 33 H 0.97004 * 119.99998 * 0.02562 * 11 9 8 34 34 H 0.97002 * 120.00737 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46456 * 301.72627 * 20 7 6 36 36 H 1.09002 * 109.46398 * 181.75511 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0071 1.3471 0.0000 4 6 2.0412 -0.7235 1.2489 5 6 3.5712 -0.7716 1.2109 6 6 4.0229 -1.4729 -0.0721 7 7 3.5093 -0.7424 -1.2378 8 6 4.0372 -1.3065 -2.4871 9 6 5.5259 -1.0812 -2.5504 10 8 6.0916 -0.5076 -1.6436 11 7 6.2290 -1.5180 -3.6140 12 6 7.5832 -1.3126 -3.6718 13 1 8.0868 -0.8010 -2.8648 14 6 8.3080 -1.7624 -4.7686 15 7 9.6062 -1.5660 -4.8239 16 14 7.4370 -2.6465 -6.1648 17 1 6.9935 -1.6555 -7.1780 18 1 8.3693 -3.6154 -6.7951 19 1 6.2560 -3.3715 -5.6312 20 6 2.0409 -0.7238 -1.2479 21 1 -0.3633 0.5125 0.8907 22 1 -0.3633 -1.0277 -0.0015 23 1 -0.3634 0.5151 -0.8893 24 1 1.7221 1.8652 0.7651 25 1 1.7157 -0.1864 2.1398 26 1 1.6444 -1.7384 1.2701 27 1 3.9678 0.2435 1.2296 28 1 3.9396 -1.3228 2.0761 29 1 5.1121 -1.4962 -0.1091 30 1 3.6373 -2.4924 -0.0837 31 1 3.8299 -2.3762 -2.5189 32 1 3.5595 -0.8184 -3.3366 33 1 5.7767 -1.9771 -4.3391 34 1 10.1123 -1.8803 -5.5894 35 1 1.6647 -1.7468 -1.2539 36 1 1.6905 -0.2028 -2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124236558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:46 Heat of formation + Delta-G solvation = -79.274158 kcal Electronic energy + Delta-G solvation = -18092.313036 eV Core-core repulsion = 15190.509620 eV Total energy + Delta-G solvation = -2901.803417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70399 -38.16714 -35.76876 -33.86118 -32.65366 -31.60431 -31.34856 -27.81837 -26.58746 -24.57420 -22.74942 -21.69074 -19.71823 -19.27074 -18.18205 -16.34855 -16.05531 -15.63335 -14.88309 -14.85399 -14.71685 -14.18511 -13.84462 -13.50002 -13.19406 -12.96110 -12.59316 -12.48602 -12.09213 -11.97529 -11.90619 -11.66073 -11.35140 -11.11906 -10.79768 -10.64321 -10.55527 -10.20300 -9.92337 -9.72225 -9.46574 -8.45342 -8.11812 -7.79527 -6.25998 -3.76910 3.06037 3.10591 3.18168 3.81148 3.95828 4.14745 4.21988 4.67119 4.79589 4.86749 4.90573 5.17132 5.26616 5.35062 5.44056 5.53793 5.61109 5.62698 5.70036 5.76706 5.81594 5.88867 5.96769 5.99422 6.05193 6.13740 6.51834 6.59260 7.31013 7.45977 7.64871 7.81233 8.20732 8.66632 9.01278 9.48506 9.90870 10.87362 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.005313 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.149184 B = 5268.641736 C = 5539.925393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.134 3.866 3 O -0.536 6.536 4 C -0.146 4.146 5 C -0.110 4.110 6 C 0.051 3.949 7 N -0.504 5.504 8 C 0.043 3.957 9 C 0.455 3.545 10 O -0.556 6.556 11 N -0.594 5.594 12 C -0.302 4.302 13 H 0.119 0.881 14 C 0.041 3.959 15 N -0.884 5.884 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.270 1.270 20 C 0.070 3.930 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.365 0.635 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.018 0.982 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.370 0.630 34 H 0.272 0.728 35 H 0.040 0.960 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.036 -1.144 7.613 20.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.093 3.907 3 O -0.340 6.340 4 C -0.184 4.184 5 C -0.147 4.147 6 C -0.076 4.076 7 N -0.228 5.228 8 C -0.089 4.089 9 C 0.241 3.759 10 O -0.437 6.437 11 N -0.234 5.234 12 C -0.431 4.431 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.524 5.524 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.058 4.058 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.211 0.789 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.202 0.798 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.990 -0.497 7.582 19.529 hybrid contribution -1.167 -1.486 -0.813 2.057 sum -19.157 -1.983 6.769 20.414 Atomic orbital electron populations 1.22478 0.96035 1.02486 1.02537 1.21165 0.91268 0.83447 0.94813 1.86766 1.76834 1.22115 1.48276 1.22305 0.97723 1.00726 0.97622 1.21464 0.93985 1.02560 0.96725 1.22279 1.03037 0.92844 0.89450 1.61377 1.05508 1.54535 1.01339 1.21884 0.95759 0.97826 0.93390 1.19654 0.87721 0.84342 0.84228 1.90531 1.70904 1.44350 1.37911 1.42217 1.08802 1.53218 1.19126 1.19430 0.80693 1.35801 1.07181 0.86289 1.25021 0.95448 0.97949 0.97768 1.69621 1.05658 1.46274 1.30849 0.86678 0.79587 0.80208 0.82946 1.19624 1.20261 1.19580 1.22053 0.88716 0.97593 0.97474 0.92231 0.91845 0.91695 0.78912 0.91905 0.91752 0.90215 0.92003 0.87853 0.96398 0.93628 0.89285 0.79783 0.91694 0.94200 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.82 37.16 0.33 -1.19 16 2 C 0.13 1.56 1.00 -90.54 -0.09 1.47 16 3 O -0.54 -7.13 12.32 -35.23 -0.43 -7.56 16 4 C -0.15 -1.60 4.99 -26.61 -0.13 -1.73 16 5 C -0.11 -1.53 5.94 -26.65 -0.16 -1.68 16 6 C 0.05 0.86 5.11 -3.84 -0.02 0.84 16 7 N -0.50 -8.74 4.28 -236.11 -1.01 -9.75 16 8 C 0.04 0.77 5.45 -4.98 -0.03 0.74 16 9 C 0.45 10.72 7.46 -10.99 -0.08 10.64 16 10 O -0.56 -15.27 13.92 5.54 0.08 -15.19 16 11 N -0.59 -14.54 5.09 -10.96 -0.06 -14.60 16 12 C -0.30 -8.71 10.16 -14.94 -0.15 -8.86 16 13 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 14 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 15 N -0.88 -26.21 13.96 55.50 0.77 -25.43 16 16 Si 0.88 19.72 27.74 -169.99 -4.71 15.00 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 20 C 0.07 0.95 4.43 -3.83 -0.02 0.93 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.37 3.29 9.05 45.56 0.41 3.70 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.27 7.80 -51.93 -0.40 0.86 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.12 5.80 -51.93 -0.30 1.82 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.09 1.42 7.98 -51.93 -0.41 1.00 16 33 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.04 8.01 -51.93 -0.42 0.63 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -33.84 290.24 -6.16 -40.00 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.72 Total: 10.98 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.45 Total: 2.19 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.29 Total: -49.78 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.36 Total: -22.76 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.84 -6.16 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124236558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.278 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds