Wall clock time and date at job start Sun Mar 29 2020 22:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.50273 * 2 1 4 4 C 1.53119 * 109.50522 * 120.08328 * 2 1 3 5 5 C 1.53124 * 109.16195 * 177.59568 * 4 2 1 6 6 C 1.53032 * 109.27564 * 302.34691 * 5 4 2 7 7 N 1.46845 * 109.53033 * 59.18041 * 6 5 4 8 8 C 1.46894 * 111.00376 * 174.16109 * 7 6 5 9 9 C 1.50701 * 109.47163 * 293.94983 * 8 7 6 10 10 O 1.21297 * 119.99710 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00255 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00029 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00147 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99996 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00314 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99879 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47178 * 90.00315 * 16 14 12 18 18 H 1.48503 * 109.47070 * 210.00057 * 16 14 12 19 19 H 1.48491 * 109.47218 * 329.99680 * 16 14 12 20 20 C 1.46851 * 111.19492 * 298.25733 * 7 6 5 21 21 H 1.09002 * 109.47153 * 299.91675 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.91865 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.91847 * 1 2 3 24 24 H 0.96697 * 113.99585 * 60.00474 * 3 2 1 25 25 H 1.09000 * 109.51847 * 297.49936 * 4 2 1 26 26 H 1.08998 * 109.52610 * 57.62576 * 4 2 1 27 27 H 1.08998 * 109.50014 * 62.28108 * 5 4 2 28 28 H 1.08998 * 109.50550 * 182.40023 * 5 4 2 29 29 H 1.09004 * 109.46047 * 179.19645 * 6 5 4 30 30 H 1.09000 * 109.46395 * 299.17018 * 6 5 4 31 31 H 1.09000 * 109.47038 * 53.95210 * 8 7 6 32 32 H 1.08998 * 109.47225 * 173.95349 * 8 7 6 33 33 H 0.97004 * 119.99998 * 0.02562 * 11 9 8 34 34 H 0.97002 * 120.00737 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46456 * 301.72627 * 20 7 6 36 36 H 1.09002 * 109.46398 * 181.75511 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0071 1.3471 0.0000 4 6 2.0412 -0.7235 1.2489 5 6 3.5712 -0.7716 1.2109 6 6 4.0229 -1.4729 -0.0721 7 7 3.5093 -0.7424 -1.2378 8 6 4.0372 -1.3065 -2.4871 9 6 5.5259 -1.0812 -2.5504 10 8 6.0916 -0.5076 -1.6436 11 7 6.2290 -1.5180 -3.6140 12 6 7.5832 -1.3126 -3.6718 13 1 8.0868 -0.8010 -2.8648 14 6 8.3080 -1.7624 -4.7686 15 7 9.6062 -1.5660 -4.8239 16 14 7.4370 -2.6465 -6.1648 17 1 6.9935 -1.6555 -7.1780 18 1 8.3693 -3.6154 -6.7951 19 1 6.2560 -3.3715 -5.6312 20 6 2.0409 -0.7238 -1.2479 21 1 -0.3633 0.5125 0.8907 22 1 -0.3633 -1.0277 -0.0015 23 1 -0.3634 0.5151 -0.8893 24 1 1.7221 1.8652 0.7651 25 1 1.7157 -0.1864 2.1398 26 1 1.6444 -1.7384 1.2701 27 1 3.9678 0.2435 1.2296 28 1 3.9396 -1.3228 2.0761 29 1 5.1121 -1.4962 -0.1091 30 1 3.6373 -2.4924 -0.0837 31 1 3.8299 -2.3762 -2.5189 32 1 3.5595 -0.8184 -3.3366 33 1 5.7767 -1.9771 -4.3391 34 1 10.1123 -1.8803 -5.5894 35 1 1.6647 -1.7468 -1.2539 36 1 1.6905 -0.2028 -2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124236558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:45 Heat of formation + Delta-G solvation = -108.382205 kcal Electronic energy + Delta-G solvation = -18093.575256 eV Core-core repulsion = 15190.509620 eV Total energy + Delta-G solvation = -2903.065636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94524 -39.80666 -37.00664 -35.88343 -33.90070 -33.60375 -32.29771 -29.29149 -27.51847 -26.39957 -24.00811 -22.81481 -21.24316 -20.72224 -20.15324 -17.82436 -17.26296 -16.87697 -16.64117 -16.31591 -15.77288 -15.57882 -15.17076 -15.00984 -14.71809 -14.31184 -14.02316 -13.88192 -13.50083 -13.12015 -12.86094 -12.75676 -12.70637 -12.48832 -12.40325 -11.98587 -11.90558 -11.72664 -11.47235 -11.21900 -10.61186 -10.30507 -10.21923 -9.09284 -8.40932 -6.01603 1.29618 1.35643 1.44148 1.96499 2.23176 2.62324 3.14256 3.20300 3.42846 3.83569 3.89583 4.01696 4.11218 4.26432 4.36879 4.38318 4.46291 4.62977 4.65217 4.72442 4.76408 4.87996 4.99418 5.06042 5.06736 5.30598 5.37072 5.45218 5.54185 5.91864 6.09499 6.29045 6.61050 6.89191 7.08275 7.40457 7.98658 8.77007 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.005313 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.149184 B = 5268.641736 C = 5539.925393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.130 3.870 3 O -0.567 6.567 4 C -0.137 4.137 5 C -0.107 4.107 6 C 0.052 3.948 7 N -0.532 5.532 8 C 0.053 3.947 9 C 0.451 3.549 10 O -0.604 6.604 11 N -0.593 5.593 12 C -0.328 4.328 13 H 0.053 0.947 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.232 1.232 20 C 0.065 3.935 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.381 0.619 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.389 0.611 34 H 0.279 0.721 35 H 0.064 0.936 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.056 -2.766 6.699 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.089 3.911 3 O -0.373 6.373 4 C -0.175 4.175 5 C -0.145 4.145 6 C -0.075 4.075 7 N -0.256 5.256 8 C -0.078 4.078 9 C 0.239 3.761 10 O -0.488 6.488 11 N -0.235 5.235 12 C -0.457 4.457 13 H 0.072 0.928 14 C -0.213 4.213 15 N -0.577 5.577 16 Si 0.785 3.215 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.155 1.155 20 C -0.063 4.063 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.081 0.919 24 H 0.229 0.771 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.134 0.866 33 H 0.224 0.776 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.051 -2.114 6.691 23.140 hybrid contribution 0.166 -0.890 -0.404 0.991 sum -21.885 -3.004 6.286 22.967 Atomic orbital electron populations 1.22375 0.93211 1.03663 1.03277 1.21309 0.93211 0.82543 0.94057 1.86717 1.77701 1.23314 1.49616 1.22265 0.94734 1.02077 0.98434 1.21417 0.96758 1.00563 0.95758 1.22160 1.00137 0.94353 0.90895 1.61312 1.08257 1.55171 1.00900 1.21820 0.90776 1.00146 0.95021 1.20903 0.90311 0.82173 0.82726 1.90520 1.72729 1.45987 1.39568 1.42035 1.07168 1.54007 1.20304 1.18996 0.83009 1.37171 1.06504 0.92838 1.26109 0.96136 0.98221 1.00871 1.69805 1.08051 1.47449 1.32356 0.85356 0.79323 0.78907 0.77869 1.18149 1.19871 1.15542 1.22246 0.85869 0.99339 0.98799 0.90612 0.90381 0.91943 0.77089 0.89697 0.89983 0.93162 0.90837 0.92859 0.94513 0.90501 0.86614 0.77554 0.91144 0.91796 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 8.82 71.98 0.64 -1.55 16 2 C 0.13 2.62 1.00 -10.74 -0.01 2.61 16 3 O -0.57 -14.23 12.32 -148.98 -1.83 -16.06 16 4 C -0.14 -2.58 4.99 30.68 0.15 -2.43 16 5 C -0.11 -2.92 5.94 30.65 0.18 -2.74 16 6 C 0.05 1.74 5.11 86.32 0.44 2.18 16 7 N -0.53 -17.79 4.28 -900.93 -3.85 -21.65 16 8 C 0.05 1.81 5.45 85.56 0.47 2.28 16 9 C 0.45 21.65 7.46 87.66 0.65 22.30 16 10 O -0.60 -35.26 13.92 -3.08 -0.04 -35.30 16 11 N -0.59 -29.21 5.09 -306.98 -1.56 -30.77 16 12 C -0.33 -19.80 10.16 84.04 0.85 -18.95 16 13 H 0.05 3.85 7.39 -2.91 -0.02 3.82 16 14 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 15 N -0.94 -57.58 13.96 21.66 0.30 -57.27 16 16 Si 0.97 39.69 27.74 68.60 1.90 41.60 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.23 -8.05 6.52 99.48 0.65 -7.41 16 20 C 0.06 1.55 4.43 86.33 0.38 1.93 16 21 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 24 H 0.38 6.27 9.05 -74.06 -0.67 5.60 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.64 7.80 -2.39 -0.02 1.62 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 2.30 5.80 -2.39 -0.01 2.29 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 32 H 0.12 3.31 7.98 -2.39 -0.02 3.29 16 33 H 0.39 15.86 5.76 -92.71 -0.53 15.32 16 34 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.88 8.01 -2.39 -0.02 1.86 16 Total: -1.00 -80.58 290.24 -1.04 -81.62 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.18 Total: 32.58 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 4.22 Total: 5.26 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -5.11 Total: -109.69 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -1.88 Total: -51.37 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.90 Total: 41.60 kcal Total: -80.58 -1.04 -81.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124236558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.761 kcal (2) G-P(sol) polarization free energy of solvation -80.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds