Wall clock time and date at job start Sun Mar 29 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 112.90745 * 2 1 4 4 C 1.53786 * 113.60861 * 228.75006 * 2 1 3 5 5 H 1.09006 * 113.68538 * 105.46088 * 4 2 1 6 6 O 1.42898 * 113.61777 * 334.56655 * 4 2 1 7 7 C 1.53782 * 87.07746 * 220.01801 * 4 2 1 8 8 C 1.53775 * 87.08281 * 25.43437 * 7 4 2 9 9 H 1.08997 * 113.61739 * 89.20122 * 8 7 4 10 10 N 1.46906 * 113.61468 * 220.01826 * 8 7 4 11 11 C 1.46901 * 110.99793 * 255.49700 * 10 8 7 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46986 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47457 * 119.99901 * 19 17 15 22 22 H 1.48501 * 109.47104 * 239.99973 * 19 17 15 23 23 H 1.09003 * 109.46861 * 288.74553 * 1 2 3 24 24 H 1.09003 * 109.47532 * 48.74151 * 1 2 3 25 25 H 1.08998 * 109.47745 * 168.75095 * 1 2 3 26 26 H 1.09002 * 109.46842 * 191.25784 * 3 2 1 27 27 H 1.08999 * 109.47236 * 311.25477 * 3 2 1 28 28 H 1.08995 * 109.47033 * 71.25311 * 3 2 1 29 29 H 0.96694 * 114.00062 * 182.99856 * 6 4 2 30 30 H 1.09008 * 113.61353 * 270.88261 * 7 4 2 31 31 H 1.09004 * 113.69030 * 139.99585 * 7 4 2 32 32 H 1.00899 * 110.99995 * 131.54098 * 10 8 7 33 33 H 1.09002 * 109.47401 * 59.99808 * 11 10 8 34 34 H 1.09001 * 109.46874 * 299.99821 * 11 10 8 35 35 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 36 36 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1459 -0.9291 -1.0594 5 1 2.5651 -0.4000 -1.9154 6 8 1.2917 -2.0100 -1.4391 7 6 3.1922 -1.3137 -0.0001 8 6 2.1460 -0.9291 1.0592 9 1 1.4955 -1.7539 1.3500 10 7 2.7108 -0.2146 2.2119 11 6 2.8017 -1.0951 3.3842 12 6 3.3847 -0.3292 4.5437 13 8 3.6936 0.8358 4.4070 14 7 3.5619 -0.9384 5.7328 15 6 4.0918 -0.2414 6.7878 16 1 4.3676 0.7956 6.6659 17 6 4.2750 -0.8696 8.0135 18 7 3.9399 -2.1316 8.1617 19 14 4.9964 0.0802 9.4513 20 1 5.2871 1.4735 9.0281 21 1 4.0229 0.0958 10.5725 22 1 6.2532 -0.5740 9.8960 23 1 -0.3633 0.3303 0.9732 24 1 -0.3634 0.6777 -0.7725 25 1 -0.3634 -1.0079 -0.2005 26 1 3.1954 1.3516 -0.2006 27 1 1.6428 2.0078 -0.7726 28 1 1.9627 1.8725 0.9731 29 1 1.6910 -2.6235 -2.0709 30 1 4.0711 -0.6687 -0.0002 31 1 3.4453 -2.3739 0.0008 32 1 2.1741 0.6135 2.4223 33 1 3.4432 -1.9451 3.1513 34 1 1.8064 -1.4527 3.6480 35 1 3.3146 -1.8699 5.8421 36 1 4.0675 -2.5700 9.0176 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168226193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:41 Heat of formation + Delta-G solvation = -68.042304 kcal Electronic energy + Delta-G solvation = -17605.470483 eV Core-core repulsion = 14704.154116 eV Total energy + Delta-G solvation = -2901.316367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26506 -38.09374 -35.66136 -34.03198 -33.13590 -31.17001 -30.34754 -27.37804 -26.84937 -24.37789 -22.91430 -22.15628 -19.30473 -18.42430 -17.83193 -17.15943 -16.09617 -15.46353 -15.13705 -14.88048 -14.44826 -14.29524 -13.80966 -13.49947 -12.97114 -12.65216 -12.54002 -12.27299 -12.15219 -11.88893 -11.77460 -11.50754 -11.40846 -11.06161 -10.88257 -10.48892 -10.32640 -10.20609 -10.03599 -9.69527 -9.49430 -8.39127 -7.99844 -7.92262 -6.39254 -3.80006 3.18059 3.28318 3.35792 3.87264 3.94748 4.15125 4.41955 4.46209 4.61491 4.83522 5.04757 5.21411 5.25569 5.31142 5.37535 5.57467 5.69695 5.71477 5.84546 5.89797 5.95313 5.97466 6.02951 6.14944 6.17726 6.31926 6.43691 6.48125 7.36393 7.51771 7.57714 7.74861 8.09609 8.64374 9.20627 9.57632 10.09184 10.78692 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.051223 B = 0.004355 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.495821 B = 6427.208476 C = 6638.186952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.122 4.122 4 C 0.083 3.917 5 H 0.067 0.933 6 O -0.550 6.550 7 C -0.157 4.157 8 C 0.073 3.927 9 H 0.072 0.928 10 N -0.655 5.655 11 C 0.049 3.951 12 C 0.442 3.558 13 O -0.584 6.584 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.377 0.623 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.349 0.651 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.392 0.608 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 -0.714 -16.600 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 C -0.180 4.180 4 C 0.024 3.976 5 H 0.085 0.915 6 O -0.356 6.356 7 C -0.196 4.196 8 C -0.037 4.037 9 H 0.090 0.910 10 N -0.288 5.288 11 C -0.083 4.083 12 C 0.228 3.772 13 O -0.468 6.468 14 N -0.202 5.202 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.225 0.775 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.527 0.166 -16.272 16.891 hybrid contribution -0.279 -0.701 0.812 1.109 sum -4.806 -0.535 -15.460 16.198 Atomic orbital electron populations 1.21630 0.93872 1.02483 1.01209 1.22172 0.95834 0.95010 0.94840 1.21478 1.00978 0.93176 1.02336 1.22765 0.91187 0.88552 0.95125 0.91528 1.86430 1.43034 1.39756 1.66335 1.23724 0.98162 1.01701 0.95971 1.23042 0.94932 0.95871 0.89897 0.90996 1.60311 1.56347 1.08074 1.04042 1.21727 0.99573 0.96270 0.90776 1.19850 0.85175 0.88273 0.83948 1.90514 1.55670 1.17163 1.83431 1.41881 1.55790 1.13557 1.08967 1.19757 1.37381 0.97247 0.88392 0.87885 1.25259 0.97835 0.95905 0.98996 1.69626 1.48330 1.10419 1.26036 0.85801 0.78400 0.79670 0.80479 1.19225 1.20786 1.20761 0.92889 0.92834 0.91444 0.91656 0.92790 0.91171 0.77563 0.88481 0.91472 0.82970 0.89758 0.93982 0.77475 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.04 37.16 0.34 -1.20 16 2 C -0.08 -0.92 1.26 -153.70 -0.19 -1.11 16 3 C -0.12 -1.40 8.47 37.16 0.31 -1.09 16 4 C 0.08 0.87 4.69 -25.92 -0.12 0.75 16 5 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 6 O -0.55 -5.52 12.12 -35.23 -0.43 -5.95 16 7 C -0.16 -1.88 7.36 -25.92 -0.19 -2.07 16 8 C 0.07 1.00 3.49 -66.90 -0.23 0.77 16 9 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 10 N -0.65 -11.00 5.63 -107.13 -0.60 -11.61 16 11 C 0.05 0.91 6.03 -4.97 -0.03 0.88 16 12 C 0.44 10.71 7.82 -10.98 -0.09 10.63 16 13 O -0.58 -16.11 15.78 5.55 0.09 -16.03 16 14 N -0.57 -14.66 5.29 -10.96 -0.06 -14.72 16 15 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 16 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 19 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.81 6.96 -51.93 -0.36 0.45 16 26 H 0.06 0.76 7.34 -51.93 -0.38 0.38 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.88 6.79 -51.93 -0.35 0.53 16 29 H 0.38 2.15 9.12 45.56 0.42 2.57 16 30 H 0.10 1.23 7.65 -51.92 -0.40 0.83 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.35 6.07 6.79 -39.29 -0.27 5.80 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.39 9.75 7.90 -40.82 -0.32 9.42 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -31.82 298.90 -5.78 -37.60 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -4.54 Total: 14.69 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.45 Total: -0.56 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.06 Total: -50.52 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.34 Total: -21.98 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.82 -5.78 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168226193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.439 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds