Wall clock time and date at job start Sun Mar 29 2020 22:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.47408 * 2 1 4 4 C 1.42894 * 114.00396 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46637 * 29.99947 * 4 3 2 6 6 C 1.52996 * 109.47505 * 270.00175 * 4 3 2 7 7 C 1.50694 * 109.47122 * 149.99661 * 4 3 2 8 8 O 1.20826 * 120.00325 * 5.00530 * 7 4 3 9 9 O 1.34238 * 120.00116 * 185.00147 * 7 4 3 10 10 C 1.45201 * 117.00213 * 180.02562 * 9 7 4 11 11 C 1.52993 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.50702 * 115.54875 * 65.10661 * 11 10 9 13 13 H 1.07999 * 120.00057 * 266.10266 * 12 11 10 14 14 C 1.37877 * 120.00108 * 86.10624 * 12 11 10 15 15 N 1.31517 * 120.00162 * 353.70363 * 14 12 11 16 16 Si 1.86801 * 120.00013 * 173.69853 * 14 12 11 17 17 H 1.48506 * 109.47053 * 90.00348 * 16 14 12 18 18 H 1.48507 * 109.47014 * 209.99980 * 16 14 12 19 19 H 1.48491 * 109.47306 * 330.00245 * 16 14 12 20 20 C 1.53001 * 117.50281 * 279.43601 * 11 10 9 21 21 C 1.53002 * 117.49858 * 210.77163 * 11 10 9 22 22 H 1.09007 * 109.46420 * 59.99965 * 1 2 3 23 23 H 1.09001 * 109.47013 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47197 * 300.00092 * 1 2 3 25 25 H 1.09000 * 109.47197 * 239.99908 * 2 1 3 26 26 H 1.08995 * 109.47081 * 119.99890 * 2 1 3 27 27 H 1.09004 * 109.46847 * 59.99377 * 6 4 3 28 28 H 1.08996 * 109.47632 * 179.97438 * 6 4 3 29 29 H 1.09005 * 109.46952 * 300.00327 * 6 4 3 30 30 H 1.09003 * 109.46814 * 300.00183 * 10 9 7 31 31 H 1.09004 * 109.46905 * 59.99570 * 10 9 7 32 32 H 0.97002 * 120.00264 * 179.97438 * 15 14 12 33 33 H 1.09002 * 117.49165 * 359.97438 * 20 11 10 34 34 H 1.08996 * 117.50215 * 145.02133 * 20 11 10 35 35 H 1.08994 * 117.50156 * 214.98093 * 21 11 10 36 36 H 1.09004 * 117.49695 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9388 1.5006 1.4432 7 6 3.8348 2.7262 -0.7099 8 8 2.9897 3.5017 -1.0899 9 8 5.1335 2.9926 -0.9206 10 6 5.4490 4.2306 -1.6106 11 6 6.9664 4.3603 -1.7571 12 6 7.6256 3.3257 -2.6324 13 1 8.0374 2.4294 -2.1925 14 6 7.7032 3.5233 -3.9947 15 7 7.0953 4.5512 -4.5457 16 14 8.6719 2.3313 -5.0578 17 1 7.7773 1.2388 -5.5178 18 1 9.2199 3.0512 -6.2354 19 1 9.7883 1.7563 -4.2654 20 6 7.7526 4.8654 -0.5457 21 6 7.5574 5.7716 -1.7639 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.6466 0.5848 1.9571 28 1 5.0254 1.5862 1.4437 29 1 3.5060 2.3592 1.9568 30 1 4.9874 4.2240 -2.5980 31 1 5.0663 5.0744 -1.0363 32 1 7.1501 4.6905 -5.5041 33 1 7.1886 5.1057 0.3557 34 1 8.7468 4.4496 -0.3819 35 1 8.4233 5.9516 -2.4010 36 1 6.8651 6.6076 -1.6644 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174748348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:37 Heat of formation + Delta-G solvation = -133.064621 kcal Electronic energy + Delta-G solvation = -17722.591492 eV Core-core repulsion = 14786.162795 eV Total energy + Delta-G solvation = -2936.428697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54986 -39.33636 -38.39951 -36.93866 -34.02982 -33.49900 -31.17252 -28.78498 -27.38470 -25.57322 -23.66822 -22.99177 -21.79488 -21.20601 -18.73330 -18.48654 -17.90405 -17.42611 -16.93372 -16.63103 -16.45825 -15.78728 -14.98158 -14.68939 -14.43471 -13.95444 -13.81414 -13.58802 -13.37075 -13.16356 -12.92876 -12.87209 -12.82397 -12.38404 -12.32880 -12.11106 -12.07863 -11.70757 -11.62005 -11.31996 -10.78977 -10.68289 -10.49088 -10.08924 -8.14324 -6.25950 1.15089 1.40881 1.43324 1.44512 1.53726 2.42108 2.84557 3.14679 3.38524 3.68090 3.86638 3.95035 4.12562 4.19173 4.31967 4.36348 4.44914 4.48336 4.62988 4.64570 4.73750 4.84174 4.89484 4.96798 5.02181 5.17600 5.19372 5.26945 5.42706 5.57366 5.64601 5.74369 6.05796 6.34801 6.78625 6.80239 7.43158 8.94741 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.005963 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.470688 B = 4694.830913 C = 5208.396855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.392 6.392 4 C 0.104 3.896 5 H 0.119 0.881 6 C -0.159 4.159 7 C 0.446 3.554 8 O -0.542 6.542 9 O -0.338 6.338 10 C 0.128 3.872 11 C 0.002 3.998 12 C -0.503 4.503 13 H 0.059 0.941 14 C 0.021 3.979 15 N -0.912 5.912 16 Si 0.954 3.046 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.174 4.174 21 C -0.147 4.147 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.261 0.739 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -9.563 10.728 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.312 6.312 4 C 0.045 3.955 5 H 0.137 0.863 6 C -0.216 4.216 7 C 0.289 3.711 8 O -0.433 6.433 9 O -0.254 6.254 10 C 0.054 3.946 11 C 0.002 3.998 12 C -0.541 4.541 13 H 0.077 0.923 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.779 3.221 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.211 4.211 21 C -0.185 4.185 22 H 0.067 0.933 23 H 0.118 0.882 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.984 -9.058 10.425 15.476 hybrid contribution 0.354 -0.093 -1.236 1.289 sum -6.630 -9.151 9.189 14.565 Atomic orbital electron populations 1.21776 0.92636 1.03697 1.02519 1.22939 0.96605 0.81653 1.01942 1.87989 1.18514 1.29502 1.95175 1.21534 0.83489 0.92408 0.98088 0.86313 1.22183 1.02795 1.04723 0.91898 1.24453 0.81043 0.88910 0.76658 1.90600 1.52971 1.50336 1.49356 1.86498 1.25997 1.43216 1.69704 1.22557 0.97333 0.81206 0.93464 1.18884 0.87947 0.95328 0.97657 1.20650 1.37249 1.04764 0.91449 0.92309 1.25760 0.95970 0.96996 0.99165 1.70118 1.42952 1.30476 1.11403 0.85623 0.79255 0.78912 0.78292 1.20463 1.20939 1.18694 1.23026 1.01744 1.04561 0.91760 1.22478 1.02222 0.93224 1.00546 0.93335 0.88195 0.91896 0.92460 0.90244 0.87774 0.89549 0.92136 0.94427 0.93461 0.93018 0.89022 0.89316 0.91082 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.04 0.86 6.47 71.98 0.47 1.32 16 3 O -0.39 -11.57 9.53 -129.95 -1.24 -12.81 16 4 C 0.10 2.99 3.24 29.85 0.10 3.08 16 5 H 0.12 2.87 7.79 -2.38 -0.02 2.85 16 6 C -0.16 -3.46 9.50 71.98 0.68 -2.77 16 7 C 0.45 18.11 7.29 71.23 0.52 18.62 16 8 O -0.54 -26.00 16.26 28.38 0.46 -25.54 16 9 O -0.34 -14.98 10.15 -51.49 -0.52 -15.50 16 10 C 0.13 6.29 5.29 71.98 0.38 6.67 16 11 C 0.00 0.11 1.62 -52.93 -0.09 0.03 16 12 C -0.50 -27.39 8.77 25.60 0.22 -27.16 16 13 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 14 C 0.02 1.16 5.38 84.65 0.46 1.62 16 15 N -0.91 -52.53 12.88 21.45 0.28 -52.26 16 16 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 C -0.17 -7.24 9.96 30.62 0.30 -6.93 16 21 C -0.15 -6.81 9.37 30.62 0.29 -6.52 16 22 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 26 H 0.08 1.10 7.87 -2.39 -0.02 1.08 16 27 H 0.10 1.54 7.87 -2.39 -0.02 1.53 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.04 2.10 8.13 -2.39 -0.02 2.08 16 31 H 0.05 2.19 8.08 -2.38 -0.02 2.17 16 32 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.09 3.55 8.14 -2.39 -0.02 3.54 16 35 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -67.83 314.10 6.11 -61.72 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.04 Total: 13.17 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.07 Total: -13.83 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.28 Total: -52.26 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -1.30 Total: -53.85 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.83 6.11 -61.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174748348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.348 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds