Wall clock time and date at job start Sun Mar 29 2020 22:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99418 * 2 1 4 4 H 1.48501 * 109.46676 * 269.99452 * 3 2 1 5 5 H 1.48491 * 109.47482 * 29.99811 * 3 2 1 6 6 H 1.48503 * 109.46915 * 150.00041 * 3 2 1 7 7 C 1.38807 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99338 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00273 * 0.28435 * 7 2 1 10 10 C 1.46506 * 119.99916 * 173.92342 * 9 7 2 11 11 H 1.09001 * 109.46733 * 182.45744 * 10 9 7 12 12 C 1.52996 * 109.46918 * 302.45620 * 10 9 7 13 13 C 1.50697 * 109.47578 * 294.92863 * 12 10 9 14 14 N 1.34772 * 120.00277 * 174.04615 * 13 12 10 15 15 O 1.21281 * 119.99497 * 354.05227 * 13 12 10 16 16 C 1.53004 * 109.47141 * 62.45675 * 10 9 7 17 17 C 1.53176 * 109.54241 * 179.82224 * 16 10 9 18 18 C 1.53101 * 109.15852 * 183.24561 * 17 16 10 19 19 O 1.42905 * 109.49070 * 57.47059 * 18 17 16 20 20 C 1.42901 * 114.09811 * 298.89464 * 19 18 17 21 21 C 1.53095 * 109.41808 * 61.15448 * 20 19 18 22 22 H 0.97005 * 120.00436 * 0.02562 * 1 2 3 23 23 H 0.96995 * 120.00354 * 353.91483 * 9 7 2 24 24 H 1.08999 * 109.47097 * 54.93242 * 12 10 9 25 25 H 1.09004 * 109.46995 * 174.92521 * 12 10 9 26 26 H 0.97000 * 120.00182 * 0.02562 * 14 13 12 27 27 H 0.96996 * 119.99828 * 180.02562 * 14 13 12 28 28 H 1.08994 * 109.54104 * 300.00280 * 16 10 9 29 29 H 1.09010 * 109.52025 * 303.05920 * 17 16 10 30 30 H 1.08999 * 109.52214 * 63.24590 * 17 16 10 31 31 H 1.08998 * 109.40292 * 297.49261 * 18 17 16 32 32 H 1.08996 * 109.49597 * 177.51141 * 18 17 16 33 33 H 1.08997 * 109.47856 * 301.17175 * 20 19 18 34 34 H 1.08998 * 109.48172 * 181.13454 * 20 19 18 35 35 H 1.08998 * 109.52676 * 182.48487 * 21 20 19 36 36 H 1.09001 * 109.57185 * 62.32620 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 -0.0048 10 6 2.0526 -3.6529 -0.1386 11 1 1.3421 -4.4791 -0.1661 12 6 2.8679 -3.6380 -1.4331 13 6 1.9338 -3.5900 -2.6147 14 7 2.4292 -3.4486 -3.8601 15 8 0.7362 -3.6784 -2.4448 16 6 2.9937 -3.8289 1.0549 17 6 3.7514 -5.1532 0.9190 18 6 4.6293 -5.3591 2.1562 19 8 3.8133 -5.3359 3.3291 20 6 3.1188 -4.1037 3.5325 21 6 2.1785 -3.8484 2.3517 22 1 -0.4851 0.8401 -0.0004 23 1 0.3594 -2.3906 0.0801 24 1 3.5145 -2.7606 -1.4452 25 1 3.4780 -4.5396 -1.4886 26 1 3.3871 -3.3781 -3.9959 27 1 1.8279 -3.4173 -4.6205 28 1 3.7046 -3.0033 1.0835 29 1 3.0387 -5.9741 0.8389 30 1 4.3774 -5.1248 0.0271 31 1 5.3690 -4.5605 2.2123 32 1 5.1374 -6.3208 2.0858 33 1 3.8387 -3.2887 3.6066 34 1 2.5385 -4.1612 4.4534 35 1 1.6806 -2.8878 2.4834 36 1 1.4324 -4.6415 2.3010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181943403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:29 Heat of formation + Delta-G solvation = -114.993517 kcal Electronic energy + Delta-G solvation = -18502.820679 eV Core-core repulsion = 15599.468354 eV Total energy + Delta-G solvation = -2903.352324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76651 -39.86761 -37.36209 -34.67779 -34.41333 -32.50574 -31.99553 -30.18522 -26.89426 -25.56688 -24.22667 -22.55158 -21.06361 -20.79816 -18.96162 -17.92038 -17.54097 -16.99974 -16.75929 -16.68503 -16.08238 -15.50931 -15.32673 -15.17662 -14.84222 -14.41542 -14.15587 -13.40106 -13.19249 -12.96180 -12.86204 -12.77954 -12.32344 -12.16756 -12.12294 -11.80475 -11.37886 -11.14691 -11.07668 -10.89614 -10.71544 -10.45372 -10.31467 -8.86288 -7.83191 -5.10028 1.46656 1.47850 1.55915 1.96054 2.60760 2.87597 3.07858 3.48745 3.83440 3.90611 4.12633 4.22634 4.25337 4.31864 4.42384 4.57237 4.58079 4.74157 4.80918 4.90058 4.91291 5.02243 5.10067 5.17258 5.26972 5.37333 5.52471 5.60575 5.67172 6.08448 6.35993 6.37008 6.68857 7.42284 7.62445 8.21509 8.46670 9.41205 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.009815 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.196027 B = 2852.209418 C = 3960.365383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.084 4.084 3 Si 0.960 3.040 4 H -0.294 1.294 5 H -0.306 1.306 6 H -0.263 1.263 7 C -0.209 4.209 8 H 0.083 0.917 9 N -0.721 5.721 10 C 0.193 3.807 11 H 0.046 0.954 12 C -0.147 4.147 13 C 0.516 3.484 14 N -0.847 5.847 15 O -0.588 6.588 16 C -0.090 4.090 17 C -0.146 4.146 18 C 0.058 3.942 19 O -0.403 6.403 20 C 0.068 3.932 21 C -0.135 4.135 22 H 0.243 0.757 23 H 0.365 0.635 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.414 0.586 27 H 0.399 0.601 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.238 -10.829 -1.266 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.275 4.275 3 Si 0.791 3.209 4 H -0.222 1.222 5 H -0.233 1.233 6 H -0.188 1.188 7 C -0.342 4.342 8 H 0.101 0.899 9 N -0.357 5.357 10 C 0.083 3.917 11 H 0.065 0.935 12 C -0.189 4.189 13 C 0.302 3.698 14 N -0.411 5.411 15 O -0.467 6.467 16 C -0.111 4.111 17 C -0.184 4.184 18 C -0.018 4.018 19 O -0.322 6.322 20 C -0.009 4.009 21 C -0.173 4.173 22 H 0.052 0.948 23 H 0.195 0.805 24 H 0.111 0.889 25 H 0.141 0.859 26 H 0.245 0.755 27 H 0.229 0.771 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.662 -10.937 -0.851 16.753 hybrid contribution -0.416 1.693 -0.698 1.878 sum 12.246 -9.244 -1.549 15.421 Atomic orbital electron populations 1.69879 1.06808 1.25174 1.60559 1.25503 0.96043 1.00831 1.05148 0.85316 0.78012 0.80559 0.77021 1.22171 1.23310 1.18776 1.19458 0.91283 0.84646 1.38764 0.89920 1.42448 1.05577 1.01048 1.86618 1.20163 0.92324 0.87870 0.91346 0.93523 1.22226 0.98540 1.04861 0.93258 1.21092 0.89085 0.73733 0.85866 1.43714 1.12662 1.77180 1.07555 1.90701 1.18684 1.51042 1.86284 1.21540 0.97183 0.97416 0.94912 1.22305 0.99678 0.96738 0.99648 1.22754 0.92083 1.03131 0.83881 1.87849 1.62897 1.36514 1.44940 1.22546 0.94242 0.86163 0.97922 1.21962 0.98452 1.01259 0.95654 0.94804 0.80455 0.88875 0.85863 0.75477 0.77091 0.92052 0.91588 0.88499 0.92790 0.86924 0.93155 0.88527 0.92736 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.47 13.07 21.65 0.28 -61.18 16 2 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 3 Si 0.96 45.94 29.55 68.60 2.03 47.97 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.21 -10.99 8.59 84.03 0.72 -10.27 16 8 H 0.08 4.01 6.69 -2.91 -0.02 3.99 16 9 N -0.72 -35.88 3.89 -322.94 -1.26 -37.13 16 10 C 0.19 7.34 1.83 44.99 0.08 7.42 16 11 H 0.05 1.89 7.86 -2.39 -0.02 1.87 16 12 C -0.15 -4.58 4.86 29.85 0.15 -4.44 16 13 C 0.52 18.58 7.92 87.66 0.69 19.27 16 14 N -0.85 -21.21 8.87 -173.54 -1.54 -22.75 16 15 O -0.59 -28.08 16.30 -3.03 -0.05 -28.12 16 16 C -0.09 -2.87 1.72 -10.67 -0.02 -2.89 16 17 C -0.15 -3.40 4.99 30.69 0.15 -3.25 16 18 C 0.06 1.26 6.84 72.02 0.49 1.76 16 19 O -0.40 -11.25 10.77 -148.98 -1.60 -12.85 16 20 C 0.07 1.95 6.84 72.01 0.49 2.44 16 21 C -0.14 -4.63 5.22 30.69 0.16 -4.47 16 22 H 0.24 15.12 8.31 -92.70 -0.77 14.35 16 23 H 0.37 21.25 8.04 -92.71 -0.75 20.50 16 24 H 0.09 2.93 7.08 -2.39 -0.02 2.91 16 25 H 0.12 2.68 6.25 -2.38 -0.01 2.66 16 26 H 0.41 6.95 8.83 -92.71 -0.82 6.13 16 27 H 0.40 9.41 8.93 -92.71 -0.83 8.58 16 28 H 0.06 2.09 7.30 -2.39 -0.02 2.07 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.10 1.74 6.51 -2.39 -0.02 1.72 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.05 2.24 7.72 -2.39 -0.02 2.23 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.09 290.49 -0.03 -74.13 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -1.28 Total: 38.71 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 3.39 Total: 1.24 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -2.51 Total: -121.06 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.65 Total: -40.98 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.09 -0.03 -74.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181943403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.868 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds