Wall clock time and date at job start Sun Mar 29 2020 23:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 H 1.09010 * 109.51245 * 305.10750 * 3 2 1 5 5 C 1.53295 * 109.51682 * 185.00126 * 3 2 1 6 6 N 1.47150 * 108.38541 * 187.77161 * 5 3 2 7 7 C 1.34776 * 120.98493 * 230.51436 * 6 5 3 8 8 O 1.21583 * 119.99689 * 355.01096 * 7 6 5 9 9 N 1.34773 * 120.00068 * 175.01405 * 7 6 5 10 10 C 1.46503 * 120.00146 * 185.08056 * 9 7 6 11 11 C 1.50694 * 109.47305 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00051 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99699 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00135 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47344 * 89.99517 * 15 13 11 17 17 H 1.48496 * 109.47168 * 209.99907 * 15 13 11 18 18 H 1.48506 * 109.46932 * 329.99944 * 15 13 11 19 19 C 1.47152 * 118.03307 * 50.53633 * 6 5 3 20 20 C 1.53297 * 108.38731 * 309.46583 * 19 6 5 21 21 O 1.42960 * 109.22275 * 52.30059 * 20 19 6 22 22 H 1.08998 * 109.46651 * 299.99614 * 1 2 3 23 23 H 1.08994 * 109.47130 * 59.99960 * 1 2 3 24 24 H 1.08997 * 109.46489 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47135 * 240.00414 * 2 1 3 26 26 H 1.08997 * 109.47637 * 120.00054 * 2 1 3 27 27 H 1.08993 * 109.68053 * 307.50214 * 5 3 2 28 28 H 1.09001 * 109.67883 * 68.04862 * 5 3 2 29 29 H 0.97004 * 119.99939 * 5.07990 * 9 7 6 30 30 H 1.08998 * 109.46659 * 300.00448 * 10 9 7 31 31 H 1.09003 * 109.46829 * 60.00004 * 10 9 7 32 32 H 0.97002 * 119.99943 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.68206 * 189.73342 * 19 6 5 34 34 H 1.09003 * 109.71259 * 69.20918 * 19 6 5 35 35 H 1.09005 * 109.50586 * 292.37531 * 20 19 6 36 36 H 1.08998 * 109.51254 * 172.22719 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9828 -0.8406 5 6 3.5678 1.4456 -0.1260 6 7 4.0464 2.8240 0.0643 7 6 4.8917 3.3929 -0.8179 8 8 5.3414 2.7379 -1.7382 9 7 5.2386 4.6879 -0.6798 10 6 6.0674 5.3369 -1.6988 11 6 6.3092 6.7726 -1.3099 12 1 5.8881 7.1626 -0.3950 13 6 7.0681 7.5884 -2.1221 14 7 7.5813 7.1133 -3.2359 15 14 7.3685 9.3678 -1.6397 16 1 8.6023 9.4565 -0.8179 17 1 7.5291 10.1923 -2.8643 18 1 6.2129 9.8694 -0.8533 19 6 3.5752 3.5627 1.2465 20 6 2.0470 3.4565 1.3057 21 8 1.6673 2.0807 1.2238 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.0003 0.7981 0.6367 28 1 3.8552 1.0905 -1.1156 29 1 4.9395 5.1903 0.0942 30 1 7.0214 4.8156 -1.7771 31 1 5.5545 5.3027 -2.6600 32 1 8.1149 7.6873 -3.8075 33 1 3.8677 4.6096 1.1659 34 1 4.0085 3.1291 2.1478 35 1 1.6115 4.0048 0.4703 36 1 1.6889 3.8778 2.2450 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336364129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:59 Heat of formation + Delta-G solvation = -78.009386 kcal Electronic energy + Delta-G solvation = -17800.160095 eV Core-core repulsion = 14898.411523 eV Total energy + Delta-G solvation = -2901.748572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15299 -38.29522 -34.62882 -34.36751 -33.89390 -32.28475 -30.10242 -28.10426 -26.61849 -24.26265 -23.05014 -22.08669 -21.00456 -19.24393 -18.15827 -16.72253 -16.14424 -15.79283 -15.48777 -14.95403 -14.84679 -14.62846 -13.89903 -13.76850 -13.45031 -13.18467 -13.13805 -12.22206 -12.04600 -11.83117 -11.72810 -11.47298 -11.17288 -11.12849 -10.96365 -10.89356 -10.58552 -10.29855 -10.07130 -9.42424 -9.36021 -8.74725 -8.36961 -7.75305 -6.16454 -4.23345 3.04166 3.24010 3.30259 3.32651 3.63959 3.84140 4.29829 4.56032 4.69714 4.82448 4.95219 4.99008 5.12173 5.18812 5.19662 5.22436 5.47261 5.55255 5.64918 5.72114 5.77362 5.80845 5.92161 6.02354 6.16346 6.64548 7.06654 7.09743 7.48089 7.51025 7.55474 7.82648 8.00164 8.72929 8.86619 9.27942 9.45322 10.93815 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045751 B = 0.004733 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.856997 B = 5914.019487 C = 6267.961410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.063 0.937 5 C 0.104 3.896 6 N -0.643 5.643 7 C 0.698 3.302 8 O -0.596 6.596 9 N -0.729 5.729 10 C 0.266 3.734 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.078 3.922 20 C 0.050 3.950 21 O -0.377 6.377 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.385 0.615 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -9.437 9.694 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.081 0.919 5 C -0.020 4.020 6 N -0.383 5.383 7 C 0.400 3.600 8 O -0.475 6.475 9 N -0.382 5.382 10 C 0.145 3.855 11 C -0.581 4.581 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.046 4.046 20 C -0.028 4.028 21 O -0.296 6.296 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.220 0.780 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.342 -9.905 8.933 18.173 hybrid contribution 0.290 1.477 0.408 1.560 sum -12.052 -8.428 9.342 17.422 Atomic orbital electron populations 1.21698 0.95124 1.01439 1.02288 1.21498 0.96775 0.93897 1.03022 1.22597 0.93897 0.94452 0.87303 0.91926 1.22039 0.93248 0.82825 1.03864 1.47327 1.50412 1.14877 1.25688 1.16041 0.79359 0.82775 0.81873 1.90859 1.58849 1.62900 1.34924 1.45876 1.55809 1.08732 1.27828 1.19004 0.89516 0.91172 0.85821 1.21206 1.33738 0.95111 1.08047 0.92014 1.24942 0.95216 0.99109 0.94704 1.69980 1.33555 1.36500 1.12195 0.86408 0.78661 0.83748 0.78034 1.20452 1.20985 1.19767 1.22255 0.95304 0.97965 0.89105 1.22946 0.93828 0.83297 1.02730 1.87906 1.79919 1.23735 1.38061 0.91990 0.92906 0.92767 0.90252 0.90924 0.91544 0.88217 0.78005 0.95613 0.95802 0.92434 0.89174 0.90972 0.92586 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.92 16 2 C -0.11 -1.08 5.64 -26.73 -0.15 -1.23 16 3 C 0.08 0.91 2.78 -26.58 -0.07 0.84 16 4 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 5 C 0.10 1.48 5.91 -3.53 -0.02 1.46 16 6 N -0.64 -10.60 3.02 -178.01 -0.54 -11.14 16 7 C 0.70 15.08 8.31 -86.92 -0.72 14.36 16 8 O -0.60 -15.28 15.85 5.29 0.08 -15.19 16 9 N -0.73 -16.07 5.46 -66.42 -0.36 -16.43 16 10 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 11 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.88 -26.20 13.29 55.43 0.74 -25.47 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.08 0.98 6.63 -3.53 -0.02 0.96 16 20 C 0.05 0.55 6.98 37.31 0.26 0.81 16 21 O -0.38 -4.61 9.93 -35.23 -0.35 -4.96 16 22 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.56 7.12 -51.93 -0.37 1.19 16 29 H 0.39 7.30 5.83 -40.82 -0.24 7.06 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 1.10 5.66 -51.93 -0.29 0.81 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -32.90 296.55 -7.29 -40.18 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.49 Total: 2.73 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -0.81 Total: 9.99 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.16 Total: -53.04 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.27 Total: -20.15 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.90 -7.29 -40.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336364129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.828 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds