Wall clock time and date at job start Sun Mar 29 2020 22:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47151 * 2 1 4 4 O 1.42902 * 110.88955 * 303.87820 * 3 2 1 5 5 C 1.55157 * 111.00506 * 179.97438 * 3 2 1 6 6 C 1.54320 * 102.94740 * 206.42471 * 5 3 2 7 7 N 1.47028 * 107.26945 * 22.19192 * 6 5 3 8 8 C 1.34776 * 125.65013 * 181.02492 * 7 6 5 9 9 O 1.21585 * 119.99999 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99898 * 0.02562 * 8 7 6 11 11 C 1.46493 * 119.99700 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.47128 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.47431 * 108.69970 * 1.28637 * 7 6 5 21 21 H 1.08998 * 109.46746 * 59.99615 * 1 2 3 22 22 H 1.08993 * 109.47116 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47012 * 300.00149 * 1 2 3 24 24 H 1.09000 * 109.47012 * 239.99851 * 2 1 3 25 25 H 1.08998 * 109.47221 * 120.00149 * 2 1 3 26 26 H 0.96705 * 113.99663 * 56.12128 * 4 3 2 27 27 H 1.08999 * 110.72070 * 88.05931 * 5 3 2 28 28 H 1.09003 * 110.87091 * 324.86334 * 5 3 2 29 29 H 1.08999 * 109.88399 * 262.77977 * 6 5 3 30 30 H 1.08996 * 110.01443 * 141.68104 * 6 5 3 31 31 H 0.96998 * 120.00160 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47786 * 60.00101 * 11 10 8 33 33 H 1.09006 * 109.47401 * 299.99686 * 11 10 8 34 34 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 35 35 H 1.09000 * 110.36402 * 94.48323 * 20 7 6 36 36 H 1.08995 * 110.36504 * 216.80131 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5082 2.1710 -1.1084 5 6 3.5910 1.4840 0.0006 6 6 3.9003 2.8397 0.6699 7 7 2.7204 3.2142 1.4631 8 6 2.5856 4.3443 2.1851 9 8 1.5606 4.5505 2.8057 10 7 3.5870 5.2457 2.2190 11 6 3.4406 6.4738 3.0042 12 6 4.6916 7.3043 2.8757 13 1 5.5136 6.9522 2.2700 14 6 4.7867 8.5134 3.5312 15 7 3.7859 8.9419 4.2691 16 14 6.3376 9.5424 3.3724 17 1 7.2926 9.1675 4.4461 18 1 6.9612 9.2967 2.0473 19 1 5.9920 10.9813 3.4977 20 6 1.7117 2.1457 1.3431 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 0.5421 2.1733 -1.1504 27 1 3.9779 1.4597 -1.0181 28 1 4.0013 0.6619 0.5871 29 1 4.0891 3.5951 -0.0929 30 1 4.7696 2.7448 1.3206 31 1 4.4048 5.0810 1.7242 32 1 3.2805 6.2185 4.0517 33 1 2.5872 7.0421 2.6342 34 1 2.9807 8.4074 4.3518 35 1 1.8012 1.4446 2.1729 36 1 0.7091 2.5723 1.3124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336418450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:48 Heat of formation + Delta-G solvation = -90.606335 kcal Electronic energy + Delta-G solvation = -17808.922926 eV Core-core repulsion = 14906.628110 eV Total energy + Delta-G solvation = -2902.294817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17898 -38.35787 -35.38304 -34.35415 -33.05651 -32.30430 -30.49374 -28.27428 -26.48769 -24.38122 -22.59776 -22.23819 -20.41743 -19.44243 -18.11807 -17.22981 -16.54668 -15.74526 -15.41177 -15.13477 -14.24140 -14.07710 -13.91546 -13.77168 -13.26319 -12.87302 -12.71767 -12.65277 -12.14513 -12.09132 -11.97202 -11.77528 -11.51835 -11.28172 -10.96540 -10.74518 -10.70259 -10.16041 -10.14926 -9.52545 -8.75533 -8.66147 -8.38437 -7.80539 -6.48102 -4.20796 3.11616 3.39783 3.43596 3.59275 3.80064 3.91711 4.23993 4.42215 4.46431 4.52240 4.82027 4.84918 5.05280 5.07359 5.23308 5.31158 5.43874 5.50310 5.61443 5.64480 5.71064 5.72269 5.81125 5.95483 5.97195 6.46131 6.98637 7.30050 7.42410 7.45330 7.52849 7.88217 8.32776 8.64993 8.83599 9.28373 9.53882 10.92339 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.050526 B = 0.004646 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.034314 B = 6025.137321 C = 6346.205804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C 0.116 3.884 4 O -0.545 6.545 5 C -0.115 4.115 6 C 0.104 3.896 7 N -0.639 5.639 8 C 0.712 3.288 9 O -0.602 6.602 10 N -0.721 5.721 11 C 0.257 3.743 12 C -0.621 4.621 13 H 0.057 0.943 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 1.079 2.921 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.282 1.282 20 C 0.106 3.894 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.376 0.624 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.389 0.611 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.273 0.727 35 H 0.068 0.932 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -18.831 -10.335 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.177 4.177 3 C 0.074 3.926 4 O -0.352 6.352 5 C -0.153 4.153 6 C -0.019 4.019 7 N -0.380 5.380 8 C 0.414 3.586 9 O -0.481 6.481 10 N -0.373 5.373 11 C 0.135 3.865 12 C -0.660 4.660 13 H 0.075 0.925 14 C -0.183 4.183 15 N -0.538 5.538 16 Si 0.907 3.093 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.208 1.208 20 C -0.018 4.018 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.225 0.775 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.222 0.778 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.043 -17.003 -9.429 19.471 hybrid contribution -0.901 -1.670 -0.594 1.988 sum -1.944 -18.673 -10.023 21.282 Atomic orbital electron populations 1.21839 0.95333 1.02482 1.02250 1.22030 0.96739 0.95667 1.03313 1.22373 0.94239 0.90185 0.85836 1.86544 1.25908 1.75536 1.47217 1.22634 0.93138 0.97262 1.02229 1.21893 0.88988 0.96405 0.94660 1.47452 1.18033 1.20189 1.52288 1.15675 0.84402 0.78899 0.79610 1.90858 1.29679 1.78011 1.49563 1.45505 1.16981 1.21650 1.53150 1.19055 0.97584 0.79743 0.90099 1.22089 1.01619 1.07127 1.35126 0.92521 1.25876 1.03441 0.96057 0.92959 1.70720 1.05934 1.40536 1.36611 0.83400 0.73879 0.76078 0.75951 1.21297 1.21382 1.20789 1.22659 0.93520 0.89260 0.96394 0.92408 0.92026 0.92034 0.90715 0.90510 0.77500 0.89224 0.89253 0.91480 0.91676 0.77832 0.96752 0.96738 0.91643 0.91393 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.41 37.16 0.35 -0.73 16 2 C -0.14 -1.03 5.25 -26.73 -0.14 -1.17 16 3 C 0.12 1.19 1.00 -88.36 -0.09 1.11 16 4 O -0.55 -6.29 13.17 -35.23 -0.46 -6.76 16 5 C -0.11 -1.13 6.15 -24.90 -0.15 -1.28 16 6 C 0.10 1.38 6.15 -3.06 -0.02 1.36 16 7 N -0.64 -10.96 3.33 -176.10 -0.59 -11.54 16 8 C 0.71 16.11 8.49 -86.92 -0.74 15.38 16 9 O -0.60 -15.92 16.60 5.29 0.09 -15.84 16 10 N -0.72 -16.80 5.51 -66.41 -0.37 -17.16 16 11 C 0.26 7.15 4.74 -5.19 -0.02 7.13 16 12 C -0.62 -17.67 9.28 -34.44 -0.32 -17.99 16 13 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 14 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 15 N -0.90 -27.93 13.65 55.43 0.76 -27.17 16 16 Si 1.08 24.93 29.90 -169.99 -5.08 19.85 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.11 1.45 5.38 -2.41 -0.01 1.44 16 21 H 0.06 0.35 6.75 -51.93 -0.35 0.00 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 26 H 0.38 3.24 7.24 45.56 0.33 3.57 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.39 8.03 7.31 -40.82 -0.30 7.73 16 32 H 0.01 0.44 8.01 -51.93 -0.42 0.02 16 33 H 0.01 0.44 8.01 -51.93 -0.42 0.03 16 34 H 0.27 8.58 7.22 -40.82 -0.29 8.28 16 35 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 36 H 0.08 1.14 7.97 -51.93 -0.41 0.73 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -35.37 297.20 -7.23 -42.60 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.81 Total: 5.76 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.24 Total: 5.77 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.19 Total: -55.87 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.38 Total: -22.59 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.37 -7.23 -42.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336418450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.007 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds