Wall clock time and date at job start Sun Mar 29 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.49400 * 2 1 4 4 C 1.53037 * 109.49508 * 120.06251 * 2 1 3 5 5 C 1.53042 * 109.53531 * 181.35266 * 4 2 1 6 6 C 1.53190 * 109.31252 * 298.63334 * 5 4 2 7 7 N 1.46926 * 108.77768 * 54.63618 * 6 5 4 8 8 C 1.34776 * 120.63673 * 126.36672 * 7 6 5 9 9 O 1.21579 * 120.00671 * 185.23057 * 8 7 6 10 10 N 1.34782 * 119.99361 * 5.22658 * 8 7 6 11 11 C 1.46496 * 119.99573 * 175.01351 * 10 8 7 12 12 C 1.50705 * 109.46959 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99765 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00051 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00178 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47450 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47299 * 299.99986 * 16 14 12 19 19 H 1.48502 * 109.47015 * 60.00514 * 16 14 12 20 20 C 1.46934 * 118.73516 * 306.64583 * 7 6 5 21 21 H 1.08997 * 109.47434 * 299.93643 * 1 2 3 22 22 H 1.09002 * 109.47050 * 59.93694 * 1 2 3 23 23 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 24 24 H 0.96700 * 113.99869 * 300.06116 * 3 2 1 25 25 H 1.08997 * 109.46240 * 61.33429 * 4 2 1 26 26 H 1.09005 * 109.45165 * 301.35944 * 4 2 1 27 27 H 1.09002 * 109.49710 * 178.68580 * 5 4 2 28 28 H 1.09000 * 109.50140 * 58.58618 * 5 4 2 29 29 H 1.09002 * 109.58960 * 294.84974 * 6 5 4 30 30 H 1.08998 * 109.70454 * 174.49408 * 6 5 4 31 31 H 0.96998 * 119.99933 * 355.02183 * 10 8 7 32 32 H 1.09002 * 109.46952 * 60.00604 * 11 10 8 33 33 H 1.08995 * 109.47535 * 300.00344 * 11 10 8 34 34 H 0.97000 * 120.00618 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.58305 * 173.14118 * 20 7 6 36 36 H 1.08996 * 109.58909 * 293.56502 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0069 1.3471 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5708 -0.6938 1.2667 6 6 4.1059 -1.4254 0.0317 7 7 3.5054 -0.8283 -1.1689 8 6 4.2819 -0.3845 -2.1771 9 8 3.7802 0.1931 -3.1220 10 7 5.6147 -0.5809 -2.1377 11 6 6.4457 -0.1970 -3.2815 12 6 7.8877 -0.5200 -2.9855 13 1 8.1580 -0.9668 -2.0402 14 6 8.8619 -0.2449 -3.9216 15 7 8.5329 0.2997 -5.0726 16 14 10.6491 -0.6458 -3.5551 17 1 11.4916 -0.2567 -4.7145 18 1 11.0876 0.1035 -2.3503 19 1 10.7891 -2.1037 -3.3096 20 6 2.0422 -0.7186 -1.2469 21 1 -0.3634 0.5128 0.8905 22 1 -0.3633 0.5148 -0.8894 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7210 1.8656 -0.7646 25 1 1.6972 -1.7570 1.2355 26 1 1.6577 -0.2239 2.1389 27 1 3.9333 -1.1883 2.1679 28 1 3.9154 0.3402 1.2547 29 1 3.8387 -2.4807 0.0877 30 1 5.1903 -1.3250 -0.0137 31 1 6.0236 -0.9765 -1.3521 32 1 6.3425 0.8728 -3.4628 33 1 6.1244 -0.7480 -4.1653 34 1 9.2183 0.4936 -5.7311 35 1 1.7653 -0.1497 -2.1345 36 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336480538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:52 Heat of formation + Delta-G solvation = -84.782534 kcal Electronic energy + Delta-G solvation = -18122.330624 eV Core-core repulsion = 15220.288347 eV Total energy + Delta-G solvation = -2902.042278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13384 -38.12746 -35.31217 -34.17635 -32.56906 -32.04506 -31.32047 -27.62765 -26.60890 -25.05641 -22.39083 -22.34070 -20.28607 -19.16213 -18.00790 -16.63551 -15.99817 -15.53993 -15.15305 -14.93251 -14.62386 -14.35823 -13.82745 -13.46293 -13.13682 -13.08461 -12.74195 -12.32096 -12.15970 -11.89408 -11.81485 -11.52209 -11.04203 -11.02117 -10.92866 -10.83669 -10.41761 -10.24845 -10.08925 -9.35256 -9.28859 -8.68942 -8.29037 -7.65685 -6.11814 -4.18317 3.21855 3.28256 3.33070 3.35397 3.93275 4.22716 4.34273 4.52803 4.70584 4.80998 4.88959 5.01041 5.20959 5.24091 5.34736 5.46331 5.53535 5.59899 5.73501 5.78915 5.81072 5.88483 5.98483 6.09466 6.35484 6.81105 7.18515 7.56015 7.58918 7.61888 7.71874 7.90895 8.06416 8.79856 8.95345 9.36934 9.52023 10.98465 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045145 B = 0.005186 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.070025 B = 5397.352433 C = 5751.207876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 O -0.552 6.552 4 C -0.102 4.102 5 C -0.132 4.132 6 C 0.113 3.887 7 N -0.631 5.631 8 C 0.700 3.300 9 O -0.602 6.602 10 N -0.729 5.729 11 C 0.267 3.733 12 C -0.541 4.541 13 H 0.061 0.939 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.285 1.285 18 H -0.275 1.275 19 H -0.276 1.276 20 C 0.108 3.892 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.377 0.623 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.385 0.615 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.094 0.906 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 -3.727 13.066 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.071 3.929 3 O -0.358 6.358 4 C -0.139 4.139 5 C -0.171 4.171 6 C -0.011 4.011 7 N -0.369 5.369 8 C 0.401 3.599 9 O -0.482 6.482 10 N -0.383 5.383 11 C 0.145 3.855 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.211 1.211 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.017 4.017 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.225 0.775 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.220 0.780 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.400 -3.440 12.677 18.764 hybrid contribution 0.894 -0.248 -0.001 0.928 sum -12.506 -3.688 12.676 18.184 Atomic orbital electron populations 1.22428 0.95480 1.02726 1.02728 1.21509 0.92145 0.83501 0.95699 1.86520 1.77373 1.22517 1.49361 1.21475 0.96317 0.99577 0.96547 1.21852 0.95398 1.02397 0.97409 1.21566 0.98369 0.96438 0.84731 1.47095 1.05471 1.65896 1.18459 1.16012 0.82231 0.79446 0.82163 1.90832 1.73708 1.48112 1.35527 1.45861 1.04550 1.65976 1.21919 1.18970 0.87687 0.96082 0.82717 1.21184 0.91363 1.42866 1.02573 0.92094 1.24934 0.99455 0.94801 0.94768 1.69970 1.34054 1.41700 1.06616 0.86475 0.83773 0.78786 0.77851 1.21081 1.20085 1.20111 1.21925 0.80361 1.00564 0.98856 0.91668 0.92013 0.91545 0.77531 0.90804 0.91322 0.91080 0.90409 0.91996 0.90067 0.77982 0.95704 0.95895 0.92436 0.88765 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.82 37.16 0.33 -1.17 16 2 C 0.11 1.28 1.00 -90.72 -0.09 1.19 16 3 O -0.55 -7.40 12.17 -35.23 -0.43 -7.83 16 4 C -0.10 -1.03 4.92 -26.69 -0.13 -1.16 16 5 C -0.13 -1.49 5.94 -26.61 -0.16 -1.65 16 6 C 0.11 1.46 6.39 -3.71 -0.02 1.44 16 7 N -0.63 -10.37 2.92 -178.76 -0.52 -10.89 16 8 C 0.70 15.31 8.30 -86.91 -0.72 14.59 16 9 O -0.60 -15.44 15.77 5.30 0.08 -15.35 16 10 N -0.73 -16.49 5.46 -66.42 -0.36 -16.85 16 11 C 0.27 7.36 5.43 -5.19 -0.03 7.33 16 12 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 C 0.11 1.46 5.33 -3.93 -0.02 1.44 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.38 4.34 9.04 45.56 0.41 4.75 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.07 7.61 -51.93 -0.40 0.67 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.08 5.64 -51.93 -0.29 0.79 16 31 H 0.39 7.60 5.81 -40.82 -0.24 7.37 16 32 H 0.02 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -33.77 293.76 -6.99 -40.76 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.64 Total: 7.08 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.26 Total: 8.34 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.15 Total: -53.53 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.35 Total: -23.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.77 -6.99 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.025 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds