Wall clock time and date at job start Sun Mar 29 2020 22:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.49400 * 2 1 4 4 C 1.53037 * 109.49508 * 120.06251 * 2 1 3 5 5 C 1.53042 * 109.53531 * 181.35266 * 4 2 1 6 6 C 1.53190 * 109.31252 * 298.63334 * 5 4 2 7 7 N 1.46926 * 108.77768 * 54.63618 * 6 5 4 8 8 C 1.34776 * 120.63673 * 126.36672 * 7 6 5 9 9 O 1.21579 * 120.00671 * 185.23057 * 8 7 6 10 10 N 1.34782 * 119.99361 * 5.22658 * 8 7 6 11 11 C 1.46496 * 119.99573 * 175.01351 * 10 8 7 12 12 C 1.50705 * 109.46959 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99765 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00051 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00178 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47450 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47299 * 299.99986 * 16 14 12 19 19 H 1.48502 * 109.47015 * 60.00514 * 16 14 12 20 20 C 1.46934 * 118.73516 * 306.64583 * 7 6 5 21 21 H 1.08997 * 109.47434 * 299.93643 * 1 2 3 22 22 H 1.09002 * 109.47050 * 59.93694 * 1 2 3 23 23 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 24 24 H 0.96700 * 113.99869 * 300.06116 * 3 2 1 25 25 H 1.08997 * 109.46240 * 61.33429 * 4 2 1 26 26 H 1.09005 * 109.45165 * 301.35944 * 4 2 1 27 27 H 1.09002 * 109.49710 * 178.68580 * 5 4 2 28 28 H 1.09000 * 109.50140 * 58.58618 * 5 4 2 29 29 H 1.09002 * 109.58960 * 294.84974 * 6 5 4 30 30 H 1.08998 * 109.70454 * 174.49408 * 6 5 4 31 31 H 0.96998 * 119.99933 * 355.02183 * 10 8 7 32 32 H 1.09002 * 109.46952 * 60.00604 * 11 10 8 33 33 H 1.08995 * 109.47535 * 300.00344 * 11 10 8 34 34 H 0.97000 * 120.00618 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.58305 * 173.14118 * 20 7 6 36 36 H 1.08996 * 109.58909 * 293.56502 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0069 1.3471 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5708 -0.6938 1.2667 6 6 4.1059 -1.4254 0.0317 7 7 3.5054 -0.8283 -1.1689 8 6 4.2819 -0.3845 -2.1771 9 8 3.7802 0.1931 -3.1220 10 7 5.6147 -0.5809 -2.1377 11 6 6.4457 -0.1970 -3.2815 12 6 7.8877 -0.5200 -2.9855 13 1 8.1580 -0.9668 -2.0402 14 6 8.8619 -0.2449 -3.9216 15 7 8.5329 0.2997 -5.0726 16 14 10.6491 -0.6458 -3.5551 17 1 11.4916 -0.2567 -4.7145 18 1 11.0876 0.1035 -2.3503 19 1 10.7891 -2.1037 -3.3096 20 6 2.0422 -0.7186 -1.2469 21 1 -0.3634 0.5128 0.8905 22 1 -0.3633 0.5148 -0.8894 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7210 1.8656 -0.7646 25 1 1.6972 -1.7570 1.2355 26 1 1.6577 -0.2239 2.1389 27 1 3.9333 -1.1883 2.1679 28 1 3.9154 0.3402 1.2547 29 1 3.8387 -2.4807 0.0877 30 1 5.1903 -1.3250 -0.0137 31 1 6.0236 -0.9765 -1.3521 32 1 6.3425 0.8728 -3.4628 33 1 6.1244 -0.7480 -4.1653 34 1 9.2183 0.4936 -5.7311 35 1 1.7653 -0.1497 -2.1345 36 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336480538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:51 Heat of formation + Delta-G solvation = -111.427791 kcal Electronic energy + Delta-G solvation = -18123.486049 eV Core-core repulsion = 15220.288347 eV Total energy + Delta-G solvation = -2903.197703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49355 -39.48977 -36.54190 -36.18300 -34.37583 -33.40912 -32.31663 -29.47052 -27.68310 -26.42837 -24.39068 -23.34877 -21.49143 -20.68109 -19.54094 -18.04793 -17.78215 -17.09540 -16.59186 -16.28057 -16.04502 -15.45718 -15.15390 -14.91087 -14.80754 -14.13035 -13.96664 -13.95374 -13.58639 -13.10273 -13.04495 -12.83280 -12.68006 -12.54096 -12.25123 -11.98758 -11.93134 -11.50058 -11.37011 -11.23608 -10.91740 -10.79248 -10.00775 -9.29696 -8.28215 -6.45348 1.43182 1.48205 1.56102 1.79019 2.21411 2.39151 3.06379 3.17568 3.34592 3.72455 3.83192 3.92539 4.08637 4.27255 4.48705 4.51388 4.71091 4.76670 4.80271 4.86879 4.96304 5.01219 5.12994 5.21949 5.25804 5.27749 5.45239 5.47618 5.58313 5.73991 5.84659 6.12554 6.65606 6.78687 7.18050 7.25005 7.69788 8.84104 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045145 B = 0.005186 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.070025 B = 5397.352433 C = 5751.207876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 O -0.574 6.574 4 C -0.101 4.101 5 C -0.127 4.127 6 C 0.104 3.896 7 N -0.621 5.621 8 C 0.693 3.307 9 O -0.650 6.650 10 N -0.725 5.725 11 C 0.286 3.714 12 C -0.557 4.557 13 H 0.082 0.918 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.988 3.012 17 H -0.284 1.284 18 H -0.263 1.263 19 H -0.261 1.261 20 C 0.100 3.900 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.380 0.620 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.401 0.599 32 H -0.018 1.018 33 H -0.015 1.015 34 H 0.269 0.731 35 H 0.068 0.932 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 -5.543 15.739 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.070 3.930 3 O -0.381 6.381 4 C -0.139 4.139 5 C -0.165 4.165 6 C -0.018 4.018 7 N -0.358 5.358 8 C 0.394 3.606 9 O -0.533 6.533 10 N -0.381 5.381 11 C 0.163 3.837 12 C -0.594 4.594 13 H 0.100 0.900 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.810 3.190 17 H -0.209 1.209 18 H -0.187 1.187 19 H -0.185 1.185 20 C -0.023 4.023 21 H 0.091 0.909 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.228 0.772 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.239 0.761 32 H 0.000 1.000 33 H 0.003 0.997 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.385 -5.291 15.436 21.105 hybrid contribution 0.769 0.317 -0.817 1.166 sum -12.616 -4.974 14.619 19.940 Atomic orbital electron populations 1.22357 0.92990 1.04147 1.03076 1.21701 0.93978 0.82240 0.95034 1.86502 1.78082 1.23781 1.49694 1.21570 0.95175 1.01084 0.96030 1.21813 0.96497 1.00601 0.97565 1.21915 0.98004 0.98164 0.83755 1.47155 1.06346 1.64352 1.17927 1.16240 0.82132 0.79311 0.82911 1.90790 1.74457 1.50164 1.37888 1.45484 1.04878 1.66492 1.21248 1.18396 0.89120 0.92880 0.83312 1.21543 0.91207 1.43112 1.03586 0.90029 1.26076 1.05072 0.94098 0.94218 1.70140 1.36030 1.42786 1.07966 0.85172 0.76629 0.79275 0.77904 1.20945 1.18727 1.18509 1.22236 0.78550 1.02144 0.99391 0.90906 0.92147 0.89550 0.77172 0.88030 0.90259 0.87963 0.93443 0.88835 0.90811 0.76131 0.99990 0.99689 0.92188 0.91335 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.82 71.98 0.64 -1.78 16 2 C 0.11 2.30 1.00 -10.86 -0.01 2.29 16 3 O -0.57 -15.25 12.17 -148.98 -1.81 -17.06 16 4 C -0.10 -1.68 4.92 30.62 0.15 -1.53 16 5 C -0.13 -2.50 5.94 30.67 0.18 -2.32 16 6 C 0.10 2.46 6.39 86.36 0.55 3.01 16 7 N -0.62 -20.07 2.92 -837.75 -2.45 -22.52 16 8 C 0.69 31.28 8.30 179.05 1.49 32.77 16 9 O -0.65 -35.21 15.77 -3.96 -0.06 -35.27 16 10 N -0.73 -33.80 5.46 -482.30 -2.63 -36.43 16 11 C 0.29 16.61 5.43 85.64 0.47 17.08 16 12 C -0.56 -31.33 9.28 25.60 0.24 -31.09 16 13 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 14 C 0.01 0.28 5.46 84.65 0.46 0.75 16 15 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 16 Si 0.99 42.94 29.54 68.60 2.03 44.96 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 C 0.10 2.62 5.33 86.22 0.46 3.08 16 21 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.38 9.11 9.04 -74.06 -0.67 8.44 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.24 7.61 -2.39 -0.02 1.22 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.85 5.64 -2.39 -0.01 1.83 16 31 H 0.40 15.83 5.81 -92.71 -0.54 15.29 16 32 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 33 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.07 2.16 6.99 -2.39 -0.02 2.15 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.89 293.76 -0.15 -77.04 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.12 Total: 24.03 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 4.62 Total: 22.25 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -4.79 Total: -115.95 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -1.88 Total: -52.34 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -76.89 -0.15 -77.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336480538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.390 kcal (2) G-P(sol) polarization free energy of solvation -76.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds