Wall clock time and date at job start Sun Mar 29 2020 22:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99811 * 2 1 4 4 H 1.48500 * 109.46887 * 239.99835 * 3 2 1 5 5 H 1.48493 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46844 * 120.00060 * 3 2 1 7 7 C 1.37878 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99773 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47167 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46923 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99421 * 179.97438 * 11 10 9 13 13 O 1.21581 * 120.00319 * 5.04094 * 12 11 10 14 14 N 1.34781 * 119.99771 * 185.03953 * 12 11 10 15 15 C 1.46492 * 119.99903 * 184.57682 * 14 12 11 16 16 C 1.52991 * 109.47290 * 270.27546 * 15 14 12 17 17 O 1.42902 * 109.47327 * 65.00548 * 16 15 14 18 18 C 1.46502 * 119.99823 * 4.85618 * 14 12 11 19 19 C 1.52994 * 117.49778 * 182.41653 * 18 14 12 20 20 C 1.52998 * 117.49897 * 113.75414 * 18 14 12 21 21 H 0.97000 * 120.00197 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47487 * 60.00303 * 9 7 2 23 23 H 1.09004 * 109.47447 * 299.99726 * 9 7 2 24 24 H 1.08992 * 109.46698 * 59.99967 * 10 9 7 25 25 H 1.08994 * 109.47005 * 299.99919 * 10 9 7 26 26 H 0.96999 * 119.99892 * 359.97438 * 11 10 9 27 27 H 1.08998 * 109.47414 * 30.27994 * 15 14 12 28 28 H 1.09011 * 109.46826 * 150.27628 * 15 14 12 29 29 H 1.09006 * 109.47225 * 185.00015 * 16 15 14 30 30 H 1.08997 * 109.47534 * 305.00334 * 16 15 14 31 31 H 0.96696 * 114.00142 * 180.02562 * 17 16 15 32 32 H 1.09004 * 115.55010 * 328.08193 * 18 14 12 33 33 H 1.08999 * 117.49925 * 359.97438 * 19 18 14 34 34 H 1.09004 * 117.49854 * 145.02073 * 19 18 14 35 35 H 1.09002 * 117.49543 * 214.98123 * 20 18 14 36 36 H 1.08992 * 117.50019 * 359.97320 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0980 -0.0018 13 8 3.3992 -6.1000 0.0907 14 7 1.5169 -7.2629 -0.1049 15 6 2.2383 -8.5340 -0.0049 16 6 2.7041 -8.9669 -1.3964 17 8 3.6603 -8.0277 -1.8922 18 6 0.0682 -7.2579 -0.3231 19 6 -0.6430 -8.6115 -0.3749 20 6 -0.4470 -7.7999 -1.6578 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8720 -3.6043 -0.8905 26 1 0.5429 -4.9308 -0.0011 27 1 3.1038 -8.4104 0.6459 28 1 1.5774 -9.2951 0.4101 29 1 3.1625 -9.9540 -1.3354 30 1 1.8486 -9.0045 -2.0707 31 1 3.9995 -8.2394 -2.7726 32 1 -0.4715 -6.4226 0.1231 33 1 -0.0330 -9.5058 -0.2471 34 1 -1.6508 -8.6666 0.0367 35 1 -1.3260 -7.3212 -2.0897 36 1 0.2918 -8.1597 -2.3738 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345809529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:32 Heat of formation + Delta-G solvation = -48.773372 kcal Electronic energy + Delta-G solvation = -17707.554290 eV Core-core repulsion = 14807.073486 eV Total energy + Delta-G solvation = -2900.480803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03624 -37.53612 -36.51099 -34.73378 -33.08382 -32.74795 -30.12833 -28.50304 -24.69875 -23.26208 -22.57453 -21.99108 -20.86449 -19.21975 -18.37072 -17.31744 -16.36363 -15.89995 -15.37273 -14.90018 -14.70374 -14.40430 -14.24219 -13.81719 -13.28713 -12.91884 -12.52951 -12.24651 -12.13033 -11.78397 -11.30442 -11.12160 -10.96553 -10.91105 -10.74048 -10.59098 -10.21465 -9.94647 -9.69354 -9.42661 -9.18805 -8.50405 -8.37708 -8.03424 -6.03826 -4.06005 2.89688 3.35424 3.38642 3.42651 3.51040 3.87283 4.20532 4.36399 4.49108 4.66547 4.71063 4.77488 5.05407 5.13829 5.28313 5.31116 5.33180 5.52494 5.64920 5.76121 5.89519 5.97728 6.37294 6.50872 6.69169 6.87534 7.16507 7.28563 7.63632 7.71194 7.71967 7.95991 8.33194 8.53046 8.99266 9.18004 9.58308 11.07923 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.004862 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.393403 B = 5757.979554 C = 6270.388491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.141 3.859 11 N -0.740 5.740 12 C 0.707 3.293 13 O -0.574 6.574 14 N -0.605 5.605 15 C 0.130 3.870 16 C 0.055 3.945 17 O -0.545 6.545 18 C 0.076 3.924 19 C -0.186 4.186 20 C -0.196 4.196 21 H 0.262 0.738 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.390 0.610 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.368 0.632 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 -19.643 -2.600 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.395 5.395 12 C 0.408 3.592 13 O -0.450 6.450 14 N -0.341 5.341 15 C 0.007 3.993 16 C -0.024 4.024 17 O -0.348 6.348 18 C -0.030 4.030 19 C -0.223 4.223 20 C -0.235 4.235 21 H 0.071 0.929 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.224 0.776 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.213 0.787 32 H 0.144 0.856 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.454 -19.177 -1.929 19.329 hybrid contribution -0.134 0.536 -0.667 0.866 sum -1.588 -18.641 -2.596 18.888 Atomic orbital electron populations 1.69947 1.06085 1.26874 1.50576 1.24986 0.94877 0.99338 0.95060 0.86576 0.79509 0.82684 0.78780 1.20125 1.21292 1.20123 1.21031 0.93248 0.90403 1.51123 0.92284 1.19312 0.94268 0.91126 0.97671 1.21548 0.95585 0.80552 1.00509 1.45609 1.09711 1.05292 1.78885 1.15856 0.85254 0.80075 0.77976 1.90904 1.11526 1.85673 1.56899 1.46506 1.05176 1.05195 1.77251 1.21347 0.97010 0.84924 0.96061 1.22741 0.91797 0.91607 0.96300 1.86846 1.60423 1.50811 1.36710 1.21634 0.82068 0.98588 1.00733 1.23319 1.01929 0.94914 1.02181 1.23527 1.03695 1.04413 0.91845 0.92873 0.96060 0.96081 0.92882 0.92980 0.77563 0.89124 0.89375 0.93570 0.93853 0.78691 0.85620 0.88309 0.87802 0.88017 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 10 C 0.14 3.23 5.62 -4.04 -0.02 3.20 16 11 N -0.74 -14.40 5.45 -65.22 -0.36 -14.75 16 12 C 0.71 13.73 7.95 -86.91 -0.69 13.04 16 13 O -0.57 -13.34 14.92 -7.83 -0.12 -13.46 16 14 N -0.60 -8.80 2.79 -171.81 -0.48 -9.28 16 15 C 0.13 1.58 5.39 -4.05 -0.02 1.56 16 16 C 0.06 0.60 7.37 37.15 0.27 0.87 16 17 O -0.54 -7.82 12.22 -48.35 -0.59 -8.41 16 18 C 0.08 0.86 5.97 -67.93 -0.41 0.46 16 19 C -0.19 -1.52 9.74 -26.70 -0.26 -1.78 16 20 C -0.20 -1.89 10.19 -26.69 -0.27 -2.16 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.39 6.68 6.29 -40.82 -0.26 6.42 16 27 H 0.09 1.30 7.50 -51.93 -0.39 0.91 16 28 H 0.09 0.76 6.00 -51.92 -0.31 0.45 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.42 5.74 -51.93 -0.30 0.13 16 31 H 0.37 3.52 9.12 45.56 0.42 3.93 16 32 H 0.13 1.41 6.61 -51.93 -0.34 1.06 16 33 H 0.10 0.71 6.11 -51.93 -0.32 0.39 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.98 6.00 -51.93 -0.31 0.67 16 LS Contribution 297.82 15.07 4.49 4.49 Total: -1.00 -34.99 297.82 -7.60 -42.59 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.31 Total: 6.03 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.95 Total: 1.88 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.10 Total: -49.86 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.71 Total: -21.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.99 -7.60 -42.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345809529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.180 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds