Wall clock time and date at job start Sun Mar 29 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99811 * 2 1 4 4 H 1.48500 * 109.46887 * 239.99835 * 3 2 1 5 5 H 1.48493 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46844 * 120.00060 * 3 2 1 7 7 C 1.37878 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99773 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47167 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46923 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99421 * 179.97438 * 11 10 9 13 13 O 1.21581 * 120.00319 * 5.04094 * 12 11 10 14 14 N 1.34781 * 119.99771 * 185.03953 * 12 11 10 15 15 C 1.46492 * 119.99903 * 184.57682 * 14 12 11 16 16 C 1.52991 * 109.47290 * 270.27546 * 15 14 12 17 17 O 1.42902 * 109.47327 * 65.00548 * 16 15 14 18 18 C 1.46502 * 119.99823 * 4.85618 * 14 12 11 19 19 C 1.52994 * 117.49778 * 182.41653 * 18 14 12 20 20 C 1.52998 * 117.49897 * 113.75414 * 18 14 12 21 21 H 0.97000 * 120.00197 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47487 * 60.00303 * 9 7 2 23 23 H 1.09004 * 109.47447 * 299.99726 * 9 7 2 24 24 H 1.08992 * 109.46698 * 59.99967 * 10 9 7 25 25 H 1.08994 * 109.47005 * 299.99919 * 10 9 7 26 26 H 0.96999 * 119.99892 * 359.97438 * 11 10 9 27 27 H 1.08998 * 109.47414 * 30.27994 * 15 14 12 28 28 H 1.09011 * 109.46826 * 150.27628 * 15 14 12 29 29 H 1.09006 * 109.47225 * 185.00015 * 16 15 14 30 30 H 1.08997 * 109.47534 * 305.00334 * 16 15 14 31 31 H 0.96696 * 114.00142 * 180.02562 * 17 16 15 32 32 H 1.09004 * 115.55010 * 328.08193 * 18 14 12 33 33 H 1.08999 * 117.49925 * 359.97438 * 19 18 14 34 34 H 1.09004 * 117.49854 * 145.02073 * 19 18 14 35 35 H 1.09002 * 117.49543 * 214.98123 * 20 18 14 36 36 H 1.08992 * 117.50019 * 359.97320 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0980 -0.0018 13 8 3.3992 -6.1000 0.0907 14 7 1.5169 -7.2629 -0.1049 15 6 2.2383 -8.5340 -0.0049 16 6 2.7041 -8.9669 -1.3964 17 8 3.6603 -8.0277 -1.8922 18 6 0.0682 -7.2579 -0.3231 19 6 -0.6430 -8.6115 -0.3749 20 6 -0.4470 -7.7999 -1.6578 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8720 -3.6043 -0.8905 26 1 0.5429 -4.9308 -0.0011 27 1 3.1038 -8.4104 0.6459 28 1 1.5774 -9.2951 0.4101 29 1 3.1625 -9.9540 -1.3354 30 1 1.8486 -9.0045 -2.0707 31 1 3.9995 -8.2394 -2.7726 32 1 -0.4715 -6.4226 0.1231 33 1 -0.0330 -9.5058 -0.2471 34 1 -1.6508 -8.6666 0.0367 35 1 -1.3260 -7.3212 -2.0897 36 1 0.2918 -8.1597 -2.3738 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345809529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:31 Heat of formation + Delta-G solvation = -75.004556 kcal Electronic energy + Delta-G solvation = -17708.691759 eV Core-core repulsion = 14807.073486 eV Total energy + Delta-G solvation = -2901.618273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32264 -38.73292 -37.46160 -36.53494 -34.78115 -34.19593 -31.80670 -29.88812 -26.64734 -24.24297 -23.60592 -23.07745 -22.62318 -20.52739 -19.55137 -18.45977 -18.36616 -17.18969 -16.72693 -16.51147 -15.93443 -15.77821 -15.46141 -15.27399 -14.74293 -14.36009 -14.27000 -13.37508 -13.27802 -13.11022 -12.92616 -12.68214 -12.51765 -12.21290 -12.09124 -11.78299 -11.72584 -11.59498 -11.41189 -10.99773 -10.77128 -10.59105 -10.03016 -9.30324 -8.23174 -6.33768 1.42057 1.45109 1.52783 1.67514 2.21490 2.41486 2.90749 2.99104 3.11282 3.48773 3.80196 3.95560 4.03469 4.20413 4.26740 4.43736 4.50596 4.51846 4.55174 4.79564 4.85487 4.86165 4.89896 5.15189 5.26103 5.33226 5.54533 5.58813 5.62610 5.79868 5.98873 6.18058 6.78443 6.97165 7.07439 7.35374 7.68104 8.88739 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.004862 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.393403 B = 5757.979554 C = 6270.388491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.737 5.737 12 C 0.701 3.299 13 O -0.619 6.619 14 N -0.595 5.595 15 C 0.121 3.879 16 C 0.053 3.947 17 O -0.585 6.585 18 C 0.037 3.963 19 C -0.152 4.152 20 C -0.194 4.194 21 H 0.266 0.734 22 H 0.007 0.993 23 H 0.007 0.993 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.402 0.598 27 H 0.062 0.938 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.384 0.616 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -20.898 -2.892 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.011 4.011 10 C 0.038 3.962 11 N -0.393 5.393 12 C 0.403 3.597 13 O -0.499 6.499 14 N -0.330 5.330 15 C -0.001 4.001 16 C -0.025 4.025 17 O -0.391 6.391 18 C -0.067 4.067 19 C -0.189 4.189 20 C -0.232 4.232 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.238 0.762 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.299 -20.496 -2.239 20.746 hybrid contribution 0.052 0.831 -0.588 1.020 sum -2.247 -19.665 -2.827 19.993 Atomic orbital electron populations 1.70050 1.07538 1.28087 1.50895 1.25865 0.95810 1.03047 0.94279 0.85484 0.78312 0.78039 0.79121 1.19357 1.20362 1.19378 1.21422 0.93550 0.91907 1.51788 0.92431 1.19100 0.94137 0.91648 0.96173 1.21021 0.94615 0.81385 0.99160 1.45330 1.10123 1.04540 1.79313 1.16048 0.84858 0.81080 0.77749 1.90864 1.13571 1.86561 1.58934 1.46460 1.06611 1.04248 1.75725 1.21680 0.96872 0.84644 0.96930 1.22882 0.92006 0.92217 0.95409 1.86801 1.61475 1.52632 1.38236 1.21891 0.80272 1.01290 1.03271 1.23461 1.02468 0.93245 0.99721 1.23555 1.03604 1.04466 0.91598 0.92491 0.97430 0.97428 0.94181 0.94366 0.76213 0.91932 0.85281 0.90463 0.92376 0.76808 0.85994 0.86638 0.85722 0.87214 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 2 C 0.01 0.50 5.46 84.66 0.46 0.97 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.43 5.09 29.85 0.15 1.58 16 10 C 0.16 7.72 5.62 86.38 0.49 8.20 16 11 N -0.74 -29.40 5.45 -478.53 -2.61 -32.00 16 12 C 0.70 27.74 7.95 179.05 1.42 29.16 16 13 O -0.62 -29.76 14.92 8.58 0.13 -29.63 16 14 N -0.60 -16.86 2.79 -815.75 -2.27 -19.13 16 15 C 0.12 2.76 5.39 86.38 0.47 3.22 16 16 C 0.05 1.05 7.37 71.98 0.53 1.58 16 17 O -0.59 -16.60 12.22 -136.43 -1.67 -18.27 16 18 C 0.04 0.78 5.97 44.99 0.27 1.05 16 19 C -0.15 -1.89 9.74 30.62 0.30 -1.59 16 20 C -0.19 -3.23 10.19 30.62 0.31 -2.91 16 21 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 22 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.40 14.00 6.29 -92.71 -0.58 13.42 16 27 H 0.06 1.79 7.50 -2.39 -0.02 1.78 16 28 H 0.13 1.78 6.00 -2.38 -0.01 1.77 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.06 0.97 5.74 -2.39 -0.01 0.96 16 31 H 0.38 7.18 9.12 -74.06 -0.68 6.51 16 32 H 0.12 2.61 6.61 -2.39 -0.02 2.60 16 33 H 0.12 1.08 6.11 -2.39 -0.01 1.07 16 34 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.65 6.00 -2.39 -0.01 1.64 16 Total: -1.00 -76.83 297.82 0.37 -76.46 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.16 Total: 21.23 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.63 Total: 9.73 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -4.59 Total: -106.06 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -1.54 Total: -47.90 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.83 0.37 -76.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345809529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.460 kcal (2) G-P(sol) polarization free energy of solvation -76.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds