Wall clock time and date at job start Sun Mar 29 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48494 * 109.47284 * 269.99850 * 3 2 1 5 5 H 1.48503 * 109.47012 * 30.00248 * 3 2 1 6 6 H 1.48501 * 109.46948 * 149.99655 * 3 2 1 7 7 C 1.37884 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99384 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00130 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47267 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99946 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00221 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99588 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99594 * 174.97584 * 14 12 11 16 16 C 1.53000 * 112.84836 * 293.96197 * 15 14 12 17 17 O 1.42901 * 109.47062 * 304.06713 * 16 15 14 18 18 C 1.53783 * 113.61095 * 162.65562 * 15 14 12 19 19 C 1.53784 * 87.08133 * 270.88117 * 18 15 14 20 20 C 1.53777 * 87.08039 * 334.57035 * 19 18 15 21 21 H 0.96992 * 120.00370 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47288 * 59.99903 * 9 7 2 23 23 H 1.09004 * 109.47068 * 299.99575 * 9 7 2 24 24 H 1.09001 * 109.47124 * 59.99707 * 10 9 7 25 25 H 1.09004 * 109.46652 * 299.99734 * 10 9 7 26 26 H 0.96994 * 119.99440 * 359.97438 * 11 10 9 27 27 H 0.97003 * 120.00145 * 354.97364 * 14 12 11 28 28 H 1.08995 * 109.47300 * 64.07214 * 16 15 14 29 29 H 1.09001 * 109.46661 * 184.07232 * 16 15 14 30 30 H 0.96697 * 113.99722 * 179.97438 * 17 16 15 31 31 H 1.08994 * 113.61780 * 25.43164 * 18 15 14 32 32 H 1.08995 * 113.61233 * 156.33565 * 18 15 14 33 33 H 1.08994 * 113.61364 * 220.02120 * 19 18 15 34 34 H 1.09004 * 113.61148 * 89.11966 * 19 18 15 35 35 H 1.09006 * 113.61332 * 270.87772 * 20 19 18 36 36 H 1.08997 * 113.61503 * 139.98222 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4867 -2.6364 0.0022 12 6 6.1605 -3.8036 0.0028 13 8 5.5527 -4.8566 0.0029 14 7 7.5083 -3.8035 0.0034 15 6 8.2408 -5.0674 0.1152 16 6 8.0414 -5.7518 1.4689 17 8 8.4114 -4.8529 2.5163 18 6 9.7138 -4.9657 -0.3149 19 6 9.2399 -5.3048 -1.7380 20 6 8.0367 -6.0059 -1.0857 21 1 -0.4850 0.8399 -0.0004 22 1 3.8745 -0.6799 0.8911 23 1 3.8752 -0.6804 -0.8889 24 1 3.6586 -3.1501 -0.8892 25 1 3.6580 -3.1504 0.8908 26 1 5.9715 -1.7964 0.0025 27 1 7.9934 -2.9667 -0.0703 28 1 6.9943 -6.0321 1.5836 29 1 8.6642 -6.6449 1.5197 30 1 8.3099 -5.2210 3.4047 31 1 10.1281 -3.9620 -0.2201 32 1 10.3514 -5.7313 0.1270 33 1 9.9059 -5.9845 -2.2696 34 1 8.9681 -4.4294 -2.3279 35 1 8.2159 -7.0560 -0.8547 36 1 7.0971 -5.8420 -1.6133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352085944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:03 Heat of formation + Delta-G solvation = -64.917995 kcal Electronic energy + Delta-G solvation = -17609.838558 eV Core-core repulsion = 14708.657671 eV Total energy + Delta-G solvation = -2901.180887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52286 -38.38066 -36.22515 -34.82459 -33.15311 -32.49869 -29.91390 -27.98363 -25.91706 -24.82663 -22.72799 -21.00875 -20.64638 -19.14381 -18.01646 -17.30499 -16.81057 -16.13116 -15.62880 -14.91034 -14.73736 -14.39360 -14.19138 -13.73259 -13.67269 -13.29069 -12.57668 -12.56696 -12.42262 -11.78066 -11.44395 -11.21267 -11.12190 -10.90778 -10.54147 -10.34379 -10.23915 -10.04264 -9.92585 -9.56330 -9.28504 -8.92005 -8.59961 -8.31885 -6.08514 -4.08240 2.97040 3.27307 3.34962 3.36655 3.58653 3.97593 4.32915 4.40256 4.50336 4.59750 4.77044 4.91457 5.23807 5.24614 5.38548 5.48266 5.49395 5.68055 5.70686 5.93185 6.03974 6.10238 6.14718 6.29204 6.62244 6.77132 6.88093 7.11846 7.28859 7.36508 7.53868 7.70781 8.37674 8.49894 8.95777 9.00438 9.51867 11.04621 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040178 B = 0.004497 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.730255 B = 6225.320739 C = 6244.595380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.150 3.850 11 N -0.743 5.743 12 C 0.704 3.296 13 O -0.594 6.594 14 N -0.724 5.724 15 C 0.178 3.822 16 C 0.073 3.927 17 O -0.568 6.568 18 C -0.132 4.132 19 C -0.141 4.141 20 C -0.137 4.137 21 H 0.264 0.736 22 H 0.021 0.979 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.391 0.609 27 H 0.395 0.605 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.375 0.625 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.512 -8.978 0.415 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.027 3.973 11 N -0.396 5.396 12 C 0.404 3.596 13 O -0.473 6.473 14 N -0.380 5.380 15 C 0.090 3.910 16 C -0.006 4.006 17 O -0.372 6.372 18 C -0.170 4.170 19 C -0.178 4.178 20 C -0.175 4.175 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.224 0.776 27 H 0.229 0.771 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.222 0.778 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.856 -9.436 -0.082 22.891 hybrid contribution 0.609 1.359 0.477 1.564 sum 21.465 -8.077 0.395 22.938 Atomic orbital electron populations 1.69900 1.06289 1.27018 1.50577 1.24995 0.94749 0.99118 0.94402 0.86750 0.80282 0.83557 0.78468 1.20256 1.21297 1.19095 1.20925 0.88669 0.94886 1.51485 0.90612 1.19796 0.97889 0.91517 0.96768 1.21343 0.74856 0.99741 1.01355 1.45519 1.08840 1.06301 1.78968 1.15976 0.81095 0.84808 0.77700 1.90870 1.67772 1.30435 1.58187 1.44634 1.04659 1.08263 1.80449 1.20974 0.92095 0.85245 0.92726 1.22527 0.99947 0.91158 0.86943 1.86468 1.89936 1.43549 1.17268 1.23170 0.94640 1.02730 0.96428 1.22860 0.97867 1.00932 0.96169 1.23208 0.99789 0.98415 0.96101 0.92579 0.96035 0.96510 0.92258 0.92264 0.77650 0.77091 0.92057 0.93229 0.77842 0.90894 0.88907 0.91187 0.90057 0.89474 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.51 4.15 -27.89 -0.12 -0.63 16 10 C 0.15 3.18 5.61 -4.04 -0.02 3.15 16 11 N -0.74 -12.94 5.56 -65.22 -0.36 -13.30 16 12 C 0.70 12.25 8.12 -86.91 -0.71 11.54 16 13 O -0.59 -12.35 14.23 5.29 0.08 -12.27 16 14 N -0.72 -9.59 5.04 -51.65 -0.26 -9.85 16 15 C 0.18 2.08 0.74 -131.01 -0.10 1.98 16 16 C 0.07 0.86 6.27 37.16 0.23 1.09 16 17 O -0.57 -6.62 13.55 -35.23 -0.48 -7.09 16 18 C -0.13 -1.15 7.38 -25.92 -0.19 -1.34 16 19 C -0.14 -1.25 7.99 -25.92 -0.21 -1.46 16 20 C -0.14 -1.53 6.95 -25.92 -0.18 -1.71 16 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 23 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.39 5.75 8.49 -40.82 -0.35 5.41 16 27 H 0.40 4.33 8.68 -40.82 -0.35 3.97 16 28 H 0.06 0.88 7.16 -51.93 -0.37 0.51 16 29 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.38 2.84 9.12 45.56 0.42 3.25 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.08 1.19 7.18 -51.93 -0.37 0.82 16 LS Contribution 299.54 15.07 4.51 4.51 Total: -1.00 -33.99 299.54 -6.88 -40.87 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.75 Total: 7.95 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.72 Total: -0.61 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.15 Total: -49.99 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.40 Total: -19.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.99 -6.88 -40.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352085944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.049 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds