Wall clock time and date at job start Sun Mar 29 2020 22:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48494 * 109.47284 * 269.99850 * 3 2 1 5 5 H 1.48503 * 109.47012 * 30.00248 * 3 2 1 6 6 H 1.48501 * 109.46948 * 149.99655 * 3 2 1 7 7 C 1.37884 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99384 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00130 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47267 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99946 * 179.97438 * 11 10 9 13 13 O 1.21585 * 120.00221 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99588 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99594 * 174.97584 * 14 12 11 16 16 C 1.53000 * 112.84836 * 293.96197 * 15 14 12 17 17 O 1.42901 * 109.47062 * 304.06713 * 16 15 14 18 18 C 1.53783 * 113.61095 * 162.65562 * 15 14 12 19 19 C 1.53784 * 87.08133 * 270.88117 * 18 15 14 20 20 C 1.53777 * 87.08039 * 334.57035 * 19 18 15 21 21 H 0.96992 * 120.00370 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47288 * 59.99903 * 9 7 2 23 23 H 1.09004 * 109.47068 * 299.99575 * 9 7 2 24 24 H 1.09001 * 109.47124 * 59.99707 * 10 9 7 25 25 H 1.09004 * 109.46652 * 299.99734 * 10 9 7 26 26 H 0.96994 * 119.99440 * 359.97438 * 11 10 9 27 27 H 0.97003 * 120.00145 * 354.97364 * 14 12 11 28 28 H 1.08995 * 109.47300 * 64.07214 * 16 15 14 29 29 H 1.09001 * 109.46661 * 184.07232 * 16 15 14 30 30 H 0.96697 * 113.99722 * 179.97438 * 17 16 15 31 31 H 1.08994 * 113.61780 * 25.43164 * 18 15 14 32 32 H 1.08995 * 113.61233 * 156.33565 * 18 15 14 33 33 H 1.08994 * 113.61364 * 220.02120 * 19 18 15 34 34 H 1.09004 * 113.61148 * 89.11966 * 19 18 15 35 35 H 1.09006 * 113.61332 * 270.87772 * 20 19 18 36 36 H 1.08997 * 113.61503 * 139.98222 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4867 -2.6364 0.0022 12 6 6.1605 -3.8036 0.0028 13 8 5.5527 -4.8566 0.0029 14 7 7.5083 -3.8035 0.0034 15 6 8.2408 -5.0674 0.1152 16 6 8.0414 -5.7518 1.4689 17 8 8.4114 -4.8529 2.5163 18 6 9.7138 -4.9657 -0.3149 19 6 9.2399 -5.3048 -1.7380 20 6 8.0367 -6.0059 -1.0857 21 1 -0.4850 0.8399 -0.0004 22 1 3.8745 -0.6799 0.8911 23 1 3.8752 -0.6804 -0.8889 24 1 3.6586 -3.1501 -0.8892 25 1 3.6580 -3.1504 0.8908 26 1 5.9715 -1.7964 0.0025 27 1 7.9934 -2.9667 -0.0703 28 1 6.9943 -6.0321 1.5836 29 1 8.6642 -6.6449 1.5197 30 1 8.3099 -5.2210 3.4047 31 1 10.1281 -3.9620 -0.2201 32 1 10.3514 -5.7313 0.1270 33 1 9.9059 -5.9845 -2.2696 34 1 8.9681 -4.4294 -2.3279 35 1 8.2159 -7.0560 -0.8547 36 1 7.0971 -5.8420 -1.6133 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352085944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:02 Heat of formation + Delta-G solvation = -93.572365 kcal Electronic energy + Delta-G solvation = -17611.081105 eV Core-core repulsion = 14708.657671 eV Total energy + Delta-G solvation = -2902.423433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61281 -39.57750 -37.08310 -36.53496 -34.84336 -34.08367 -31.71981 -28.93038 -26.80392 -26.60192 -23.71276 -22.67485 -22.07887 -20.16223 -19.42651 -18.86941 -18.18088 -17.15724 -16.77839 -16.34200 -16.14265 -15.92593 -15.33405 -15.19958 -14.85954 -14.76549 -14.57416 -13.39558 -13.33355 -13.26756 -13.04852 -12.60201 -12.16977 -12.15918 -11.91744 -11.78251 -11.74659 -11.53172 -11.38940 -11.19364 -10.78715 -10.72435 -10.22250 -9.69244 -8.30015 -6.37243 1.38974 1.41746 1.53104 1.73154 2.21104 2.36985 3.04995 3.17855 3.31403 3.55176 3.79508 3.94632 4.16288 4.34143 4.43416 4.44618 4.50011 4.67936 4.75463 4.80231 4.87107 5.06745 5.13007 5.14742 5.15829 5.34590 5.41126 5.45857 5.67469 5.76400 6.05592 6.23415 6.69839 6.84304 7.17206 7.27290 7.65557 8.86910 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040178 B = 0.004497 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.730255 B = 6225.320739 C = 6244.595380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.167 3.833 11 N -0.735 5.735 12 C 0.701 3.299 13 O -0.633 6.633 14 N -0.707 5.707 15 C 0.156 3.844 16 C 0.075 3.925 17 O -0.580 6.580 18 C -0.114 4.114 19 C -0.131 4.131 20 C -0.143 4.143 21 H 0.268 0.732 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.408 0.592 27 H 0.409 0.591 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.392 0.608 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.232 -7.789 0.441 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.162 1.162 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.043 3.957 11 N -0.390 5.390 12 C 0.401 3.599 13 O -0.514 6.514 14 N -0.363 5.363 15 C 0.068 3.932 16 C -0.004 4.004 17 O -0.388 6.388 18 C -0.151 4.151 19 C -0.168 4.168 20 C -0.182 4.182 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.243 0.757 27 H 0.245 0.755 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.240 0.760 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 24.650 -8.248 -0.045 25.993 hybrid contribution -0.603 0.856 0.493 1.157 sum 24.047 -7.392 0.447 25.162 Atomic orbital electron populations 1.70069 1.08566 1.28454 1.51971 1.26067 0.95677 1.03813 0.93618 0.85530 0.79591 0.77345 0.79347 1.18909 1.21146 1.16203 1.21243 0.91516 0.93407 1.51603 0.95317 1.19636 0.94422 0.92868 0.97956 1.20831 0.77218 0.98161 0.99528 1.45154 1.07235 1.07390 1.79237 1.16134 0.82371 0.83960 0.77463 1.90850 1.68981 1.31812 1.59775 1.44509 1.03054 1.09867 1.78850 1.21407 0.94221 0.84603 0.92968 1.22496 0.98439 0.92311 0.87106 1.86414 1.89749 1.44214 1.18387 1.23146 0.92358 1.04066 0.95544 1.22820 0.96750 1.00737 0.96534 1.23265 0.99143 0.99636 0.96118 0.92289 0.94662 0.94650 0.94134 0.94373 0.75662 0.75477 0.95718 0.90157 0.75957 0.89885 0.86790 0.89072 0.90647 0.87932 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 2 C 0.01 0.31 5.47 84.66 0.46 0.77 16 3 Si 0.96 42.92 27.47 68.60 1.88 44.80 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 7 C -0.54 -31.41 9.66 25.60 0.25 -31.17 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.50 4.15 29.85 0.12 -0.38 16 10 C 0.17 7.19 5.61 86.38 0.48 7.68 16 11 N -0.73 -24.97 5.56 -478.53 -2.66 -27.63 16 12 C 0.70 24.22 8.12 179.05 1.45 25.68 16 13 O -0.63 -27.12 14.23 -3.98 -0.06 -27.17 16 14 N -0.71 -17.67 5.04 -435.60 -2.19 -19.86 16 15 C 0.16 3.35 0.74 4.13 0.00 3.36 16 16 C 0.08 1.66 6.27 71.98 0.45 2.11 16 17 O -0.58 -12.36 13.55 -148.98 -2.02 -14.38 16 18 C -0.11 -1.56 7.38 31.12 0.23 -1.33 16 19 C -0.13 -1.95 7.99 31.12 0.25 -1.71 16 20 C -0.14 -3.04 6.95 31.12 0.22 -2.82 16 21 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 22 H 0.04 1.53 7.20 -2.39 -0.02 1.52 16 23 H 0.04 1.51 7.57 -2.38 -0.02 1.49 16 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.41 11.02 8.49 -92.71 -0.79 10.23 16 27 H 0.41 7.90 8.68 -92.71 -0.80 7.09 16 28 H 0.02 0.72 7.16 -2.39 -0.02 0.70 16 29 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 30 H 0.39 5.23 9.12 -74.06 -0.68 4.55 16 31 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 32 H 0.11 1.15 8.07 -2.39 -0.02 1.13 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.10 1.79 8.10 -2.38 -0.02 1.77 16 36 H 0.05 1.35 7.18 -2.39 -0.02 1.33 16 Total: -1.00 -76.43 299.54 -2.05 -78.48 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -1.22 Total: 23.17 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 3.92 Total: 2.19 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.56 Total: -107.08 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -2.07 Total: -41.56 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -76.43 -2.05 -78.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352085944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.097 kcal (2) G-P(sol) polarization free energy of solvation -76.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds