Wall clock time and date at job start Sun Mar 29 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48495 * 109.47295 * 269.99665 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99925 * 3 2 1 6 6 H 1.48502 * 109.46721 * 149.99692 * 3 2 1 7 7 C 1.37874 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00130 * 180.27786 * 7 2 1 10 10 N 1.46496 * 109.47320 * 179.72520 * 9 7 2 11 11 C 1.34780 * 120.00333 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99784 * 355.01674 * 11 10 9 13 13 N 1.34779 * 120.00163 * 175.01303 * 11 10 9 14 14 C 1.46930 * 120.62928 * 5.23125 * 13 11 10 15 15 C 1.53187 * 108.77592 * 126.36677 * 14 13 11 16 16 C 1.53042 * 109.31469 * 54.62976 * 15 14 13 17 17 C 1.53038 * 109.53956 * 298.63918 * 16 15 14 18 18 H 1.09004 * 109.49508 * 301.41049 * 17 16 15 19 19 C 1.53006 * 109.49811 * 181.34778 * 17 16 15 20 20 O 1.42900 * 109.46797 * 174.99703 * 19 17 16 21 21 C 1.46921 * 120.62743 * 184.94595 * 13 11 10 22 22 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47401 * 299.72645 * 9 7 2 24 24 H 1.09000 * 109.47377 * 59.72433 * 9 7 2 25 25 H 0.97002 * 120.00022 * 359.97438 * 10 9 7 26 26 H 1.09000 * 109.58181 * 246.15405 * 14 13 11 27 27 H 1.08995 * 109.58571 * 6.43534 * 14 13 11 28 28 H 1.08995 * 109.50154 * 174.58558 * 15 14 13 29 29 H 1.08999 * 109.49631 * 294.68420 * 15 14 13 30 30 H 1.09001 * 109.45625 * 58.65852 * 16 15 14 31 31 H 1.08997 * 109.45872 * 178.62395 * 16 15 14 32 32 H 1.09001 * 109.46756 * 294.99800 * 19 17 16 33 33 H 1.08999 * 109.47022 * 54.99462 * 19 17 16 34 34 H 0.96705 * 113.98938 * 179.97438 * 20 19 17 35 35 H 1.08993 * 109.59258 * 353.41992 * 21 13 11 36 36 H 1.09004 * 109.58450 * 113.85129 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0069 10 7 3.9999 -2.5751 0.0128 11 6 5.3250 -2.8214 0.0185 12 8 6.1147 -1.9014 -0.0727 13 7 5.7747 -4.0875 0.1255 14 6 4.8362 -5.2180 0.1215 15 6 5.2663 -6.2120 -0.9619 16 6 6.7269 -6.6082 -0.7343 17 6 7.6160 -5.3669 -0.8373 18 1 7.4914 -4.9106 -1.8194 19 6 9.0794 -5.7692 -0.6430 20 8 9.9181 -4.6318 -0.8544 21 6 7.2130 -4.3636 0.2419 22 1 -0.4850 0.8401 -0.0004 23 1 3.8786 -0.6826 -0.8830 24 1 3.8711 -0.6776 0.8969 25 1 3.3696 -3.3124 0.0126 26 1 4.8515 -5.7089 1.0946 27 1 3.8298 -4.8568 -0.0898 28 1 4.6364 -7.1001 -0.9116 29 1 5.1639 -5.7478 -1.9428 30 1 6.8332 -7.0498 0.2565 31 1 7.0281 -7.3341 -1.4896 32 1 9.2219 -6.1424 0.3711 33 1 9.3393 -6.5503 -1.3575 34 1 10.8618 -4.8138 -0.7470 35 1 7.7746 -3.4392 0.1075 36 1 7.4260 -4.7835 1.2250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408368220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:06 Heat of formation + Delta-G solvation = -84.717903 kcal Electronic energy + Delta-G solvation = -17819.804246 eV Core-core repulsion = 14917.764771 eV Total energy + Delta-G solvation = -2902.039475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01887 -37.95328 -36.36699 -34.30935 -33.05173 -32.13384 -31.35709 -27.96711 -25.91273 -25.05522 -22.19707 -21.98323 -20.40099 -19.25749 -17.99837 -17.46581 -16.40186 -15.99826 -15.33702 -14.98144 -14.52518 -14.25482 -14.16323 -13.74986 -13.41093 -13.20789 -12.90464 -12.76817 -12.32775 -12.03109 -11.79443 -11.23579 -11.05751 -10.91655 -10.77518 -10.70377 -10.54296 -10.16993 -9.91659 -9.45054 -9.39287 -8.73115 -8.44489 -7.88836 -6.17061 -4.18569 3.16216 3.31942 3.38516 3.47955 3.82508 3.97799 4.38396 4.57858 4.64685 4.72058 4.89571 4.94057 5.08600 5.18833 5.28083 5.38110 5.41125 5.49182 5.56351 5.73686 5.81144 5.88044 5.99716 6.18827 6.27397 6.72820 6.90185 7.17739 7.31514 7.45508 7.46651 7.57998 8.30852 8.72320 8.84616 9.26885 9.45419 10.94926 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038830 B = 0.005260 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.918764 B = 5322.397479 C = 5917.628723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.724 5.724 11 C 0.698 3.302 12 O -0.600 6.600 13 N -0.637 5.637 14 C 0.110 3.890 15 C -0.134 4.134 16 C -0.110 4.110 17 C -0.105 4.105 18 H 0.082 0.918 19 C 0.084 3.916 20 O -0.569 6.569 21 C 0.141 3.859 22 H 0.267 0.733 23 H 0.019 0.981 24 H 0.022 0.978 25 H 0.391 0.609 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.377 0.623 35 H 0.099 0.901 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 -16.001 -0.355 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.114 3.886 10 N -0.378 5.378 11 C 0.400 3.600 12 O -0.479 6.479 13 N -0.376 5.376 14 C -0.014 4.014 15 C -0.172 4.172 16 C -0.148 4.148 17 C -0.125 4.125 18 H 0.100 0.900 19 C 0.006 3.994 20 O -0.373 6.373 21 C 0.017 3.983 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.040 0.960 25 H 0.227 0.773 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.223 0.777 35 H 0.117 0.883 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.654 -14.851 -0.499 20.870 hybrid contribution 0.472 0.093 0.052 0.484 sum 15.126 -14.758 -0.447 21.138 Atomic orbital electron populations 1.69885 1.06202 1.27371 1.49717 1.24772 0.94775 0.99144 0.93885 0.86810 0.80603 0.83167 0.79083 1.19840 1.20962 1.18439 1.21089 0.88578 0.95145 1.53068 0.90386 1.19361 0.94783 0.77801 0.96631 1.45560 1.03773 1.10973 1.77503 1.16033 0.83595 0.82312 0.78094 1.90854 1.55400 1.42982 1.58641 1.47270 1.06765 1.04518 1.79054 1.21591 0.93398 0.87664 0.98711 1.21900 0.96154 0.99270 0.99878 1.21474 0.94808 0.96473 1.02032 1.21490 0.92644 0.96829 1.01543 0.89975 1.22155 0.90311 0.87759 0.99180 1.86579 1.20702 1.35893 1.94173 1.21215 0.80503 1.00075 0.96464 0.92315 0.96309 0.96016 0.77324 0.91675 0.89904 0.90553 0.91241 0.91619 0.91701 0.93562 0.93582 0.77651 0.88283 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.54 -15.23 9.83 -34.45 -0.34 -15.57 16 8 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 9 C 0.24 6.13 4.50 -5.20 -0.02 6.11 16 10 N -0.72 -15.88 5.46 -66.42 -0.36 -16.25 16 11 C 0.70 14.99 8.30 -86.91 -0.72 14.27 16 12 O -0.60 -15.23 15.77 5.29 0.08 -15.14 16 13 N -0.64 -10.38 2.98 -178.77 -0.53 -10.91 16 14 C 0.11 1.36 6.39 -3.71 -0.02 1.34 16 15 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 16 C -0.11 -0.97 5.17 -26.69 -0.14 -1.11 16 17 C -0.11 -1.19 2.56 -90.72 -0.23 -1.42 16 18 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.08 0.76 6.43 37.16 0.24 0.99 16 20 O -0.57 -6.02 13.30 -35.23 -0.47 -6.49 16 21 C 0.14 2.03 5.54 -3.93 -0.02 2.01 16 22 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.51 7.58 -51.93 -0.39 0.12 16 24 H 0.02 0.59 7.19 -51.93 -0.37 0.22 16 25 H 0.39 7.57 5.81 -40.82 -0.24 7.34 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.06 5.64 -51.93 -0.29 0.76 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.38 2.08 9.12 45.56 0.42 2.50 16 35 H 0.10 1.75 6.83 -51.93 -0.35 1.39 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -34.95 291.55 -6.92 -41.87 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.62 Total: 4.07 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.52 Total: 7.27 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.12 Total: -53.30 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.39 Total: -21.64 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.95 -6.92 -41.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408368220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.851 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds