Wall clock time and date at job start Sun Mar 29 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48495 * 109.47295 * 269.99665 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99925 * 3 2 1 6 6 H 1.48502 * 109.46721 * 149.99692 * 3 2 1 7 7 C 1.37874 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00130 * 180.27786 * 7 2 1 10 10 N 1.46496 * 109.47320 * 179.72520 * 9 7 2 11 11 C 1.34780 * 120.00333 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99784 * 355.01674 * 11 10 9 13 13 N 1.34779 * 120.00163 * 175.01303 * 11 10 9 14 14 C 1.46930 * 120.62928 * 5.23125 * 13 11 10 15 15 C 1.53187 * 108.77592 * 126.36677 * 14 13 11 16 16 C 1.53042 * 109.31469 * 54.62976 * 15 14 13 17 17 C 1.53038 * 109.53956 * 298.63918 * 16 15 14 18 18 H 1.09004 * 109.49508 * 301.41049 * 17 16 15 19 19 C 1.53006 * 109.49811 * 181.34778 * 17 16 15 20 20 O 1.42900 * 109.46797 * 174.99703 * 19 17 16 21 21 C 1.46921 * 120.62743 * 184.94595 * 13 11 10 22 22 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47401 * 299.72645 * 9 7 2 24 24 H 1.09000 * 109.47377 * 59.72433 * 9 7 2 25 25 H 0.97002 * 120.00022 * 359.97438 * 10 9 7 26 26 H 1.09000 * 109.58181 * 246.15405 * 14 13 11 27 27 H 1.08995 * 109.58571 * 6.43534 * 14 13 11 28 28 H 1.08995 * 109.50154 * 174.58558 * 15 14 13 29 29 H 1.08999 * 109.49631 * 294.68420 * 15 14 13 30 30 H 1.09001 * 109.45625 * 58.65852 * 16 15 14 31 31 H 1.08997 * 109.45872 * 178.62395 * 16 15 14 32 32 H 1.09001 * 109.46756 * 294.99800 * 19 17 16 33 33 H 1.08999 * 109.47022 * 54.99462 * 19 17 16 34 34 H 0.96705 * 113.98938 * 179.97438 * 20 19 17 35 35 H 1.08993 * 109.59258 * 353.41992 * 21 13 11 36 36 H 1.09004 * 109.58450 * 113.85129 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0069 10 7 3.9999 -2.5751 0.0128 11 6 5.3250 -2.8214 0.0185 12 8 6.1147 -1.9014 -0.0727 13 7 5.7747 -4.0875 0.1255 14 6 4.8362 -5.2180 0.1215 15 6 5.2663 -6.2120 -0.9619 16 6 6.7269 -6.6082 -0.7343 17 6 7.6160 -5.3669 -0.8373 18 1 7.4914 -4.9106 -1.8194 19 6 9.0794 -5.7692 -0.6430 20 8 9.9181 -4.6318 -0.8544 21 6 7.2130 -4.3636 0.2419 22 1 -0.4850 0.8401 -0.0004 23 1 3.8786 -0.6826 -0.8830 24 1 3.8711 -0.6776 0.8969 25 1 3.3696 -3.3124 0.0126 26 1 4.8515 -5.7089 1.0946 27 1 3.8298 -4.8568 -0.0898 28 1 4.6364 -7.1001 -0.9116 29 1 5.1639 -5.7478 -1.9428 30 1 6.8332 -7.0498 0.2565 31 1 7.0281 -7.3341 -1.4896 32 1 9.2219 -6.1424 0.3711 33 1 9.3393 -6.5503 -1.3575 34 1 10.8618 -4.8138 -0.7470 35 1 7.7746 -3.4392 0.1075 36 1 7.4260 -4.7835 1.2250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408368220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:06 Heat of formation + Delta-G solvation = -112.882952 kcal Electronic energy + Delta-G solvation = -17821.025575 eV Core-core repulsion = 14917.764771 eV Total energy + Delta-G solvation = -2903.260803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43263 -39.12908 -37.30829 -36.24994 -34.63742 -33.82481 -32.35525 -29.93737 -26.81226 -26.33917 -23.94762 -23.11607 -21.60964 -20.73466 -19.49966 -18.42885 -18.18809 -17.41704 -16.69291 -16.44258 -16.13446 -15.38744 -15.30096 -15.06025 -14.64353 -14.55932 -14.44680 -14.19947 -13.77157 -13.67580 -13.04015 -12.73065 -12.67031 -12.12189 -11.93721 -11.89515 -11.70627 -11.57866 -11.49221 -11.13634 -10.92546 -10.85959 -10.13761 -9.42012 -8.40823 -6.47564 1.32502 1.34142 1.48113 1.74283 2.14014 2.28248 2.94606 3.09965 3.34290 3.79762 3.86456 4.03253 4.08756 4.25699 4.45345 4.57315 4.60012 4.68696 4.70985 4.74910 4.87880 4.93408 5.02562 5.05983 5.13280 5.23517 5.23831 5.44660 5.52860 5.61962 5.93364 6.19449 6.53032 6.98351 7.07442 7.18595 7.61286 8.73844 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038830 B = 0.005260 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.918764 B = 5322.397479 C = 5917.628723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.030 3.970 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.251 3.749 10 N -0.722 5.722 11 C 0.692 3.308 12 O -0.646 6.646 13 N -0.629 5.629 14 C 0.101 3.899 15 C -0.130 4.130 16 C -0.103 4.103 17 C -0.102 4.102 18 H 0.051 0.949 19 C 0.085 3.915 20 O -0.601 6.601 21 C 0.137 3.863 22 H 0.273 0.727 23 H 0.006 0.994 24 H 0.009 0.991 25 H 0.403 0.597 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.397 0.603 35 H 0.058 0.942 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.952 -18.021 -0.036 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.126 3.874 10 N -0.378 5.378 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.366 5.366 14 C -0.021 4.021 15 C -0.168 4.168 16 C -0.140 4.140 17 C -0.122 4.122 18 H 0.069 0.931 19 C 0.007 3.993 20 O -0.409 6.409 21 C 0.015 3.985 22 H 0.083 0.917 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.241 0.759 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.247 0.753 35 H 0.077 0.923 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.742 -16.955 -0.177 23.137 hybrid contribution 0.149 0.621 -0.039 0.639 sum 15.891 -16.335 -0.216 22.790 Atomic orbital electron populations 1.69971 1.07542 1.28652 1.50596 1.25531 0.95529 1.02471 0.93480 0.85880 0.79200 0.79471 0.79471 1.19043 1.19406 1.18831 1.21228 0.89614 0.94672 1.52804 0.92201 1.18956 0.93270 0.79818 0.95313 1.45291 1.04566 1.09917 1.78039 1.16224 0.82813 0.83697 0.77917 1.90813 1.56306 1.45123 1.60668 1.47363 1.08412 1.03620 1.77214 1.21953 0.92092 0.86832 1.01266 1.21906 0.97770 0.99394 0.97699 1.21477 0.93019 0.95417 1.04133 1.21483 0.95268 0.97008 0.98440 0.93061 1.22229 0.88319 0.87597 1.01138 1.86534 1.22620 1.37369 1.94423 1.21381 0.78692 0.99397 0.99062 0.91744 0.97644 0.97313 0.75893 0.88999 0.90766 0.87435 0.93108 0.89405 0.89366 0.91432 0.91185 0.75343 0.92294 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.45 0.30 -55.88 16 2 C 0.03 1.76 5.47 84.65 0.46 2.23 16 3 Si 0.94 45.52 27.47 68.60 1.88 47.41 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.26 -12.92 6.54 99.48 0.65 -12.27 16 7 C -0.55 -31.19 9.83 25.60 0.25 -30.94 16 8 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 9 C 0.25 13.22 4.50 85.63 0.39 13.60 16 10 N -0.72 -32.24 5.46 -482.31 -2.63 -34.87 16 11 C 0.69 30.28 8.30 179.05 1.49 31.76 16 12 O -0.65 -33.97 15.77 -3.99 -0.06 -34.03 16 13 N -0.63 -20.18 2.98 -837.76 -2.50 -22.67 16 14 C 0.10 2.28 6.39 86.36 0.55 2.83 16 15 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 16 C -0.10 -1.42 5.17 30.62 0.16 -1.27 16 17 C -0.10 -2.13 2.56 -10.86 -0.03 -2.16 16 18 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 19 C 0.08 1.29 6.43 71.98 0.46 1.75 16 20 O -0.60 -12.06 13.30 -148.98 -1.98 -14.04 16 21 C 0.14 3.85 5.54 86.22 0.48 4.33 16 22 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 23 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 24 H 0.01 0.49 7.19 -2.39 -0.02 0.48 16 25 H 0.40 15.77 5.81 -92.71 -0.54 15.23 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.81 5.64 -2.39 -0.01 1.79 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.40 3.80 9.12 -74.05 -0.68 3.12 16 35 H 0.06 2.14 6.83 -2.39 -0.02 2.13 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -77.51 291.55 -0.78 -78.28 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.18 Total: 15.66 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 4.39 Total: 20.15 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -4.83 Total: -113.42 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -2.04 Total: -48.08 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -77.51 -0.78 -78.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408368220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.601 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds