Wall clock time and date at job start Sun Mar 29 2020 23:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.47290 * 2 1 4 4 H 1.08998 * 109.47506 * 55.09801 * 3 2 1 5 5 C 1.50706 * 109.47306 * 175.09849 * 3 2 1 6 6 H 1.08000 * 120.00018 * 119.99874 * 5 3 2 7 7 C 1.37868 * 119.99596 * 299.99835 * 5 3 2 8 8 N 1.31514 * 120.00411 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99782 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47117 * 59.99886 * 9 7 5 11 11 H 1.48498 * 109.47275 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46963 * 299.99859 * 9 7 5 13 13 N 1.46902 * 109.47029 * 295.09673 * 3 2 1 14 14 C 1.46904 * 111.00222 * 154.21794 * 13 3 2 15 15 C 1.52991 * 109.47300 * 185.20974 * 14 13 3 16 16 H 1.09005 * 110.46747 * 305.69975 * 15 14 13 17 17 C 1.54092 * 110.52380 * 183.07299 * 15 14 13 18 18 N 1.47412 * 103.62480 * 241.40473 * 17 15 14 19 19 C 1.46498 * 125.53320 * 179.97438 * 18 17 15 20 20 C 1.34002 * 108.91093 * 359.88571 * 18 17 15 21 21 O 1.21511 * 123.07616 * 180.10948 * 20 18 17 22 22 O 1.33770 * 113.85721 * 0.07657 * 20 18 17 23 23 H 1.09002 * 109.47160 * 180.29063 * 1 2 3 24 24 H 1.08999 * 109.47103 * 300.29046 * 1 2 3 25 25 H 1.08996 * 109.46978 * 60.28898 * 1 2 3 26 26 H 1.09004 * 109.46973 * 239.99889 * 2 1 3 27 27 H 1.09004 * 109.47160 * 120.00164 * 2 1 3 28 28 H 0.96997 * 120.00018 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00137 * 278.17370 * 13 3 2 30 30 H 1.09000 * 109.46770 * 65.20560 * 14 13 3 31 31 H 1.08998 * 109.47053 * 305.21525 * 14 13 3 32 32 H 1.09008 * 110.56155 * 359.93680 * 17 15 14 33 33 H 1.09001 * 110.57062 * 122.79117 * 17 15 14 34 34 H 1.08992 * 109.47438 * 179.88959 * 19 18 17 35 35 H 1.08995 * 109.47230 * 299.89764 * 19 18 17 36 36 H 1.09002 * 109.46604 * 59.88948 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 0.8428 5 6 3.5422 1.4441 0.1214 6 1 4.1463 1.8891 -0.6555 7 6 4.1453 0.8776 1.2242 8 7 3.4097 0.3362 2.1705 9 14 6.0073 0.8791 1.3744 10 1 6.5028 2.2789 1.3740 11 1 6.4022 0.2152 2.6427 12 1 6.5971 0.1449 0.2262 13 7 1.6495 2.0999 -1.2543 14 6 1.5529 3.5551 -1.0780 15 6 1.0203 4.1903 -2.3639 16 1 1.6320 3.8953 -3.2165 17 6 0.9816 5.7251 -2.2324 18 7 -0.4476 6.0511 -2.3883 19 6 -1.0238 7.3972 -2.3426 20 6 -1.1334 4.9160 -2.5806 21 8 -2.3375 4.8879 -2.7415 22 8 -0.3713 3.8166 -2.5799 23 1 -0.3633 -1.0277 0.0052 24 1 -0.3633 0.5183 0.8874 25 1 -0.3633 0.5093 -0.8925 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8341 -0.0627 2.9462 29 1 2.2895 1.8675 -1.9989 30 1 2.5398 3.9602 -0.8543 31 1 0.8739 3.7771 -0.2548 32 1 1.3407 6.0345 -1.2507 33 1 1.5710 6.1921 -3.0214 34 1 -2.1020 7.3361 -2.4897 35 1 -0.8143 7.8494 -1.3733 36 1 -0.5835 8.0077 -3.1310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496329421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:47 Heat of formation + Delta-G solvation = -73.365202 kcal Electronic energy + Delta-G solvation = -17907.092631 eV Core-core repulsion = 15005.545446 eV Total energy + Delta-G solvation = -2901.547185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37179 -37.31080 -36.05871 -35.36215 -32.90694 -31.43381 -29.83112 -27.62584 -26.27617 -24.38030 -22.64478 -21.96038 -20.76252 -19.52374 -17.38305 -16.87664 -16.80134 -16.25411 -15.07575 -14.88173 -14.31711 -14.17589 -13.98008 -13.60485 -13.24013 -12.68136 -12.62761 -12.57016 -12.24686 -11.83413 -11.61576 -11.26523 -11.15105 -10.93005 -10.69100 -10.48257 -10.36903 -10.20022 -9.60795 -9.49518 -9.11771 -8.97259 -8.43311 -7.35202 -6.05297 -4.19716 2.55931 2.88621 3.22645 3.29280 3.30268 3.62086 4.15699 4.33497 4.63318 4.68491 5.16652 5.17728 5.21099 5.22207 5.43853 5.48535 5.59210 5.83029 6.08924 6.23144 6.37148 6.44539 6.57106 6.76767 7.10223 7.23879 7.39238 7.50268 7.55828 7.73079 8.01776 8.05482 8.14863 8.25181 8.56397 8.92206 9.48340 10.94752 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.031126 B = 0.005719 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.346148 B = 4894.664155 C = 5517.181729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.683 5.683 14 C 0.060 3.940 15 C 0.075 3.925 16 H 0.111 0.889 17 C 0.071 3.929 18 N -0.640 5.640 19 C 0.115 3.885 20 C 0.639 3.361 21 O -0.534 6.534 22 O -0.301 6.301 23 H 0.024 0.976 24 H 0.035 0.965 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.090 0.910 28 H 0.263 0.737 29 H 0.329 0.671 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 11.701 -7.258 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.590 4.590 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.312 5.312 14 C -0.070 4.070 15 C 0.018 3.982 16 H 0.129 0.871 17 C -0.053 4.053 18 N -0.390 5.390 19 C -0.026 4.026 20 C 0.394 3.606 21 O -0.420 6.420 22 O -0.210 6.210 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.435 11.230 -7.067 13.706 hybrid contribution 2.263 0.367 0.294 2.311 sum -1.173 11.597 -6.773 13.481 Atomic orbital electron populations 1.21711 0.98819 0.98432 1.00646 1.21485 0.92251 0.98972 1.01653 1.19158 0.92774 0.91449 0.85732 0.94998 1.21806 0.92593 1.38838 1.05718 0.92858 1.24934 0.97966 0.94878 0.95659 1.69871 1.35008 1.37775 1.09387 0.86704 0.85933 0.78136 0.77458 1.20444 1.21204 1.20243 1.60845 1.55306 1.04649 1.10385 1.22110 0.99429 0.91888 0.93596 1.24064 0.80438 0.91824 1.01856 0.87077 1.22933 0.82718 0.95444 1.04158 1.48024 1.07912 1.07353 1.75663 1.21431 1.00001 0.79506 1.01634 1.18702 0.85959 0.79838 0.76093 1.90993 1.09947 1.85517 1.55585 1.87464 1.19925 1.29180 1.84451 0.95646 0.94601 0.92982 0.95034 0.89195 0.92713 0.85462 0.92758 0.90950 0.88804 0.89220 0.89523 0.91788 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.80 37.16 0.36 -2.62 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.17 1.98 -68.87 -0.14 5.04 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -14.08 8.47 -34.44 -0.29 -14.38 16 6 H 0.05 1.32 7.73 -52.49 -0.41 0.92 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.73 16 9 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.68 -13.56 5.67 -107.96 -0.61 -14.17 16 14 C 0.06 0.99 5.05 -3.83 -0.02 0.97 16 15 C 0.07 0.99 4.08 -26.17 -0.11 0.89 16 16 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 17 C 0.07 0.72 7.36 -2.97 -0.02 0.70 16 18 N -0.64 -7.91 3.37 -186.51 -0.63 -8.54 16 19 C 0.12 1.02 11.23 59.85 0.67 1.69 16 20 C 0.64 10.81 8.85 53.71 0.48 11.28 16 21 O -0.53 -10.78 17.31 -19.12 -0.33 -11.11 16 22 O -0.30 -5.23 10.80 -37.83 -0.41 -5.64 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.11 7.76 -51.93 -0.40 0.71 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.33 6.27 8.46 -39.29 -0.33 5.93 16 30 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 31 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 32 H 0.09 0.85 7.73 -51.92 -0.40 0.45 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.85 7.53 -51.93 -0.39 0.46 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -31.16 301.05 -6.71 -37.87 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.57 Total: 2.87 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.70 Total: 2.63 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.62 Total: -46.45 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.74 Total: -16.75 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.16 -6.71 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496329421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.490 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds