Wall clock time and date at job start Sun Mar 29 2020 23:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.47290 * 2 1 4 4 H 1.08998 * 109.47506 * 55.09801 * 3 2 1 5 5 C 1.50706 * 109.47306 * 175.09849 * 3 2 1 6 6 H 1.08000 * 120.00018 * 119.99874 * 5 3 2 7 7 C 1.37868 * 119.99596 * 299.99835 * 5 3 2 8 8 N 1.31514 * 120.00411 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99782 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47117 * 59.99886 * 9 7 5 11 11 H 1.48498 * 109.47275 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46963 * 299.99859 * 9 7 5 13 13 N 1.46902 * 109.47029 * 295.09673 * 3 2 1 14 14 C 1.46904 * 111.00222 * 154.21794 * 13 3 2 15 15 C 1.52991 * 109.47300 * 185.20974 * 14 13 3 16 16 H 1.09005 * 110.46747 * 305.69975 * 15 14 13 17 17 C 1.54092 * 110.52380 * 183.07299 * 15 14 13 18 18 N 1.47412 * 103.62480 * 241.40473 * 17 15 14 19 19 C 1.46498 * 125.53320 * 179.97438 * 18 17 15 20 20 C 1.34002 * 108.91093 * 359.88571 * 18 17 15 21 21 O 1.21511 * 123.07616 * 180.10948 * 20 18 17 22 22 O 1.33770 * 113.85721 * 0.07657 * 20 18 17 23 23 H 1.09002 * 109.47160 * 180.29063 * 1 2 3 24 24 H 1.08999 * 109.47103 * 300.29046 * 1 2 3 25 25 H 1.08996 * 109.46978 * 60.28898 * 1 2 3 26 26 H 1.09004 * 109.46973 * 239.99889 * 2 1 3 27 27 H 1.09004 * 109.47160 * 120.00164 * 2 1 3 28 28 H 0.96997 * 120.00018 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00137 * 278.17370 * 13 3 2 30 30 H 1.09000 * 109.46770 * 65.20560 * 14 13 3 31 31 H 1.08998 * 109.47053 * 305.21525 * 14 13 3 32 32 H 1.09008 * 110.56155 * 359.93680 * 17 15 14 33 33 H 1.09001 * 110.57062 * 122.79117 * 17 15 14 34 34 H 1.08992 * 109.47438 * 179.88959 * 19 18 17 35 35 H 1.08995 * 109.47230 * 299.89764 * 19 18 17 36 36 H 1.09002 * 109.46604 * 59.88948 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 0.8428 5 6 3.5422 1.4441 0.1214 6 1 4.1463 1.8891 -0.6555 7 6 4.1453 0.8776 1.2242 8 7 3.4097 0.3362 2.1705 9 14 6.0073 0.8791 1.3744 10 1 6.5028 2.2789 1.3740 11 1 6.4022 0.2152 2.6427 12 1 6.5971 0.1449 0.2262 13 7 1.6495 2.0999 -1.2543 14 6 1.5529 3.5551 -1.0780 15 6 1.0203 4.1903 -2.3639 16 1 1.6320 3.8953 -3.2165 17 6 0.9816 5.7251 -2.2324 18 7 -0.4476 6.0511 -2.3883 19 6 -1.0238 7.3972 -2.3426 20 6 -1.1334 4.9160 -2.5806 21 8 -2.3375 4.8879 -2.7415 22 8 -0.3713 3.8166 -2.5799 23 1 -0.3633 -1.0277 0.0052 24 1 -0.3633 0.5183 0.8874 25 1 -0.3633 0.5093 -0.8925 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8341 -0.0627 2.9462 29 1 2.2895 1.8675 -1.9989 30 1 2.5398 3.9602 -0.8543 31 1 0.8739 3.7771 -0.2548 32 1 1.3407 6.0345 -1.2507 33 1 1.5710 6.1921 -3.0214 34 1 -2.1020 7.3361 -2.4897 35 1 -0.8143 7.8494 -1.3733 36 1 -0.5835 8.0077 -3.1310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496329421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:46 Heat of formation + Delta-G solvation = -95.592152 kcal Electronic energy + Delta-G solvation = -17908.056464 eV Core-core repulsion = 15005.545446 eV Total energy + Delta-G solvation = -2902.511018 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.51900 -38.68585 -37.74721 -36.39208 -34.62527 -33.22928 -31.12587 -28.84890 -27.77933 -25.75918 -24.32643 -23.24636 -21.90449 -21.40094 -18.79695 -18.36133 -18.00251 -17.48799 -16.76348 -16.32420 -15.76049 -15.38751 -15.12104 -14.95138 -14.80830 -14.29292 -13.91734 -13.58616 -13.26797 -13.21914 -13.10849 -13.04074 -12.84648 -12.61188 -12.50093 -12.04568 -11.83172 -11.68822 -11.51401 -11.26864 -11.00112 -10.44429 -9.90573 -9.03132 -8.02693 -6.26154 1.43171 1.44890 1.51697 1.56539 1.65816 2.42806 2.56172 3.11386 3.19809 3.59753 3.78908 4.03299 4.21672 4.45089 4.51121 4.59144 4.66682 4.74538 4.79879 4.85929 4.89837 4.92757 4.99140 5.17750 5.40479 5.41985 5.51956 5.62262 5.77475 6.09099 6.18332 6.35314 6.38600 6.82860 6.95673 7.03822 7.46239 8.94014 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.031126 B = 0.005719 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.346148 B = 4894.664155 C = 5517.181729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.003 1.003 5 C -0.558 4.558 6 H 0.061 0.939 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.685 5.685 14 C 0.063 3.937 15 C 0.076 3.924 16 H 0.137 0.863 17 C 0.078 3.922 18 N -0.630 5.630 19 C 0.108 3.892 20 C 0.629 3.371 21 O -0.582 6.582 22 O -0.332 6.332 23 H 0.043 0.957 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.336 0.664 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 13.389 -8.421 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.015 0.985 5 C -0.597 4.597 6 H 0.079 0.921 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.315 5.315 14 C -0.068 4.068 15 C 0.020 3.980 16 H 0.154 0.846 17 C -0.044 4.044 18 N -0.378 5.378 19 C -0.032 4.032 20 C 0.384 3.616 21 O -0.472 6.472 22 O -0.241 6.241 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.783 12.962 -8.244 15.465 hybrid contribution 1.767 -0.130 0.666 1.893 sum -0.016 12.832 -7.578 14.903 Atomic orbital electron populations 1.21565 0.97081 0.99525 1.00165 1.21375 0.93775 0.98854 1.00124 1.18889 0.91957 0.91283 0.86345 0.98522 1.22144 0.93547 1.38264 1.05726 0.92066 1.25715 1.02232 0.94727 0.95508 1.70022 1.36682 1.38737 1.09890 0.85683 0.80768 0.78404 0.77166 1.19460 1.21583 1.19713 1.60711 1.55210 1.06866 1.08682 1.22119 0.99649 0.89988 0.95007 1.24202 0.78900 0.94091 1.00789 0.84554 1.23150 0.81702 0.92863 1.06727 1.48214 1.08623 1.07224 1.73781 1.21739 0.99334 0.78027 1.04073 1.18931 0.85647 0.80764 0.76263 1.90940 1.12000 1.86284 1.57956 1.87412 1.21735 1.30456 1.84478 0.93764 0.95504 0.92885 0.95069 0.92030 0.92976 0.84680 0.91690 0.93100 0.87314 0.84894 0.91109 0.89688 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 9.80 71.98 0.71 -4.74 16 2 C -0.10 -4.98 5.45 30.59 0.17 -4.81 16 3 C 0.22 10.82 1.98 44.17 0.09 10.91 16 4 H 0.00 -0.18 7.70 -2.39 -0.02 -0.19 16 5 C -0.56 -28.34 8.47 25.60 0.22 -28.12 16 6 H 0.06 2.95 7.73 -2.91 -0.02 2.92 16 7 C 0.02 0.96 5.29 84.65 0.45 1.40 16 8 N -0.91 -51.31 11.29 21.44 0.24 -51.06 16 9 Si 0.95 41.23 29.54 68.60 2.03 43.25 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 N -0.69 -26.88 5.67 -495.46 -2.81 -29.69 16 14 C 0.06 1.99 5.05 86.30 0.44 2.43 16 15 C 0.08 1.84 4.08 30.96 0.13 1.97 16 16 H 0.14 2.64 8.14 -2.38 -0.02 2.62 16 17 C 0.08 1.28 7.36 86.57 0.64 1.92 16 18 N -0.63 -14.07 3.37 -975.71 -3.29 -17.36 16 19 C 0.11 1.60 11.23 127.77 1.43 3.04 16 20 C 0.63 20.99 8.85 129.91 1.15 22.14 16 21 O -0.58 -23.97 17.31 19.65 0.34 -23.63 16 22 O -0.33 -11.32 10.80 -47.31 -0.51 -11.83 16 23 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 25 H 0.05 2.26 7.76 -2.39 -0.02 2.24 16 26 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 3.35 5.96 -2.38 -0.01 3.34 16 28 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.34 12.36 8.46 -89.69 -0.76 11.61 16 30 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 31 H 0.05 1.83 7.92 -2.39 -0.02 1.81 16 32 H 0.11 1.53 7.73 -2.38 -0.02 1.52 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.31 7.53 -2.39 -0.02 1.29 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.46 301.05 1.71 -67.75 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.31 Total: 16.44 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.41 Total: 6.13 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -5.86 Total: -98.11 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.17 Total: -35.46 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -69.46 1.71 -67.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496329421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.843 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds