Wall clock time and date at job start Sun Mar 29 2020 23:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 N 1.46508 * 109.46868 * 119.99965 * 2 1 3 5 5 C 1.34773 * 120.00027 * 84.99989 * 4 2 1 6 6 O 1.21586 * 119.99926 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00088 * 180.28024 * 5 4 2 8 8 C 1.47025 * 125.64338 * 359.40913 * 7 5 4 9 9 C 1.54339 * 107.26391 * 178.85524 * 8 7 5 10 10 C 1.55160 * 103.01942 * 338.14378 * 9 8 7 11 11 O 1.42901 * 111.00228 * 277.23276 * 10 9 8 12 12 C 1.50693 * 111.03824 * 153.39761 * 10 9 8 13 13 H 1.08001 * 120.00060 * 272.60878 * 12 10 9 14 14 C 1.37876 * 120.00276 * 92.60594 * 12 10 9 15 15 N 1.31514 * 119.99821 * 173.51947 * 14 12 10 16 16 Si 1.86798 * 119.99943 * 353.52115 * 14 12 10 17 17 H 1.48500 * 109.47286 * 87.32166 * 16 14 12 18 18 H 1.48501 * 109.47016 * 207.32110 * 16 14 12 19 19 H 1.48500 * 109.46959 * 327.32121 * 16 14 12 20 20 C 1.47424 * 125.65191 * 179.72486 * 7 5 4 21 21 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47717 * 300.00523 * 1 2 3 23 23 H 1.09002 * 109.46722 * 60.00366 * 1 2 3 24 24 H 1.08998 * 109.46993 * 239.99319 * 2 1 3 25 25 H 1.09003 * 109.47109 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46843 * 300.00062 * 3 2 1 27 27 H 1.09005 * 109.46999 * 59.99841 * 3 2 1 28 28 H 0.96994 * 119.99464 * 264.99974 * 4 2 1 29 29 H 1.08997 * 109.88690 * 298.39941 * 8 7 5 30 30 H 1.08998 * 109.88419 * 59.56683 * 8 7 5 31 31 H 1.08997 * 110.85184 * 219.67763 * 9 8 7 32 32 H 1.08996 * 110.51352 * 96.45363 * 9 8 7 33 33 H 0.96701 * 114.00266 * 168.39868 * 11 10 9 34 34 H 0.97006 * 119.99669 * 179.97438 * 15 14 12 35 35 H 1.09001 * 110.36567 * 322.92603 * 20 7 5 36 36 H 1.09004 * 110.36231 * 85.13606 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -2.0322 1.1945 6 8 1.8574 -2.6694 0.2003 7 7 2.5908 -2.6681 2.2968 8 6 2.9800 -2.0234 3.5596 9 6 3.3910 -3.1438 4.5383 10 6 2.6799 -4.3942 3.9566 11 8 1.3177 -4.4540 4.3841 12 6 3.4153 -5.6562 4.3275 13 1 4.2205 -6.0151 3.7037 14 6 3.0601 -6.3525 5.4633 15 7 3.6128 -7.5180 5.7197 16 14 1.7940 -5.6406 6.6377 17 1 0.4325 -6.0395 6.1991 18 1 2.0439 -6.1569 8.0074 19 1 1.8990 -4.1593 6.6403 20 6 2.7727 -4.1246 2.4340 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.2489 -0.1823 1.9895 29 1 3.8206 -1.3509 3.3888 30 1 2.1355 -1.4683 3.9680 31 1 3.0327 -2.9300 5.5452 32 1 4.4726 -3.2778 4.5329 33 1 0.7858 -5.1095 3.9124 34 1 3.3632 -8.0078 6.5190 35 1 1.9818 -4.6571 1.9056 36 1 3.7496 -4.4224 2.0531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591892351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:54 Heat of formation + Delta-G solvation = -80.340338 kcal Electronic energy + Delta-G solvation = -18282.565855 eV Core-core repulsion = 15380.716206 eV Total energy + Delta-G solvation = -2901.849650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96131 -37.97870 -35.79028 -34.69193 -32.37322 -31.52829 -29.82262 -28.25681 -27.32028 -25.17299 -22.72652 -21.25038 -19.83596 -19.73438 -17.83813 -17.36668 -16.10302 -15.51332 -15.11366 -14.81737 -14.48532 -14.31504 -13.64492 -13.62401 -12.95658 -12.68211 -12.46914 -12.32406 -12.23400 -11.93729 -11.68019 -11.55310 -11.42516 -11.05505 -10.96713 -10.49448 -10.38303 -10.20169 -9.78529 -9.23414 -8.98321 -8.66556 -8.52313 -7.98313 -6.19154 -4.31150 2.95005 3.45844 3.52004 3.54858 3.68990 4.26802 4.49903 4.77126 4.97312 5.02333 5.13969 5.16750 5.35581 5.44727 5.57121 5.59074 5.66164 5.76031 5.80310 5.87341 6.02050 6.10726 6.21655 6.50423 6.54925 6.67692 6.70952 6.73699 7.05832 7.36925 7.49749 8.12775 8.32008 8.62701 8.81881 8.93383 9.42415 10.89731 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046780 B = 0.005950 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.404009 B = 4704.568547 C = 4787.651418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.159 4.159 4 N -0.746 5.746 5 C 0.719 3.281 6 O -0.599 6.599 7 N -0.629 5.629 8 C 0.102 3.898 9 C -0.120 4.120 10 C 0.219 3.781 11 O -0.559 6.559 12 C -0.552 4.552 13 H 0.082 0.918 14 C 0.075 3.925 15 N -0.888 5.888 16 Si 0.952 3.048 17 H -0.293 1.293 18 H -0.327 1.327 19 H -0.270 1.270 20 C 0.108 3.892 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.393 0.607 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.371 0.629 34 H 0.267 0.733 35 H 0.069 0.931 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 16.140 -6.142 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 C -0.217 4.217 4 N -0.402 5.402 5 C 0.421 3.579 6 O -0.478 6.478 7 N -0.366 5.366 8 C -0.022 4.022 9 C -0.158 4.158 10 C 0.179 3.821 11 O -0.367 6.367 12 C -0.590 4.590 13 H 0.100 0.900 14 C -0.130 4.130 15 N -0.523 5.523 16 Si 0.787 3.213 17 H -0.221 1.221 18 H -0.258 1.258 19 H -0.196 1.196 20 C -0.014 4.014 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.227 0.773 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.219 0.781 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.322 16.016 -6.465 17.588 hybrid contribution -0.650 0.100 0.688 0.952 sum -3.972 16.116 -5.777 17.575 Atomic orbital electron populations 1.22209 0.95750 1.02747 1.01518 1.20726 0.93786 0.92091 0.88464 1.22075 1.01675 0.95306 1.02631 1.45249 1.72395 1.05530 1.17026 1.15494 0.78264 0.81522 0.82638 1.90877 1.58131 1.65760 1.33069 1.47725 1.68070 1.09049 1.11779 1.22041 0.98322 0.96751 0.85043 1.22948 1.01179 0.93456 0.98228 1.20248 0.79815 0.94322 0.87738 1.86103 1.23689 1.63081 1.63831 1.21114 1.20023 1.06775 1.11054 0.90042 1.25109 0.96246 0.93959 0.97708 1.69973 1.42924 1.12664 1.26721 0.85639 0.79992 0.79266 0.76372 1.22084 1.25820 1.19610 1.22976 1.01368 0.77528 0.99574 0.91921 0.92749 0.91992 0.89605 0.92056 0.91059 0.92229 0.77318 0.92791 0.92543 0.90205 0.89637 0.78066 0.92405 0.91254 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.15 1.79 3.18 -67.93 -0.22 1.58 16 3 C -0.16 -1.28 9.38 37.16 0.35 -0.93 16 4 N -0.75 -10.21 5.04 -58.67 -0.30 -10.50 16 5 C 0.72 13.15 8.45 -86.92 -0.73 12.41 16 6 O -0.60 -13.05 16.26 5.29 0.09 -12.96 16 7 N -0.63 -11.58 3.33 -176.23 -0.59 -12.16 16 8 C 0.10 1.63 6.15 -3.05 -0.02 1.61 16 9 C -0.12 -2.30 5.90 -24.89 -0.15 -2.45 16 10 C 0.22 4.81 0.70 -89.63 -0.06 4.75 16 11 O -0.56 -12.19 8.52 -35.23 -0.30 -12.49 16 12 C -0.55 -14.52 8.89 -34.44 -0.31 -14.82 16 13 H 0.08 2.33 8.00 -52.49 -0.42 1.91 16 14 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.89 -26.18 13.96 55.43 0.77 -25.40 16 16 Si 0.95 23.22 24.93 -169.99 -4.24 18.98 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 19 H -0.27 -6.41 5.42 56.52 0.31 -6.10 16 20 C 0.11 2.23 6.07 -2.53 -0.02 2.22 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.39 4.52 7.59 -40.82 -0.31 4.21 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 32 H 0.09 1.60 8.03 -51.93 -0.42 1.19 16 33 H 0.37 7.32 8.98 45.56 0.41 7.73 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 36 H 0.07 1.46 7.99 -51.93 -0.41 1.04 16 LS Contribution 291.61 15.07 4.39 4.39 Total: -1.00 -32.12 291.61 -5.98 -38.10 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.92 Total: 7.18 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.90 Total: 4.87 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.11 Total: -48.07 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.21 Total: -25.45 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.24 Total: 18.98 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.12 -5.98 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591892351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.240 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds