Wall clock time and date at job start Sun Mar 29 2020 23:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 N 1.46508 * 109.46868 * 119.99965 * 2 1 3 5 5 C 1.34773 * 120.00027 * 84.99989 * 4 2 1 6 6 O 1.21586 * 119.99926 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00088 * 180.28024 * 5 4 2 8 8 C 1.47025 * 125.64338 * 359.40913 * 7 5 4 9 9 C 1.54339 * 107.26391 * 178.85524 * 8 7 5 10 10 C 1.55160 * 103.01942 * 338.14378 * 9 8 7 11 11 O 1.42901 * 111.00228 * 277.23276 * 10 9 8 12 12 C 1.50693 * 111.03824 * 153.39761 * 10 9 8 13 13 H 1.08001 * 120.00060 * 272.60878 * 12 10 9 14 14 C 1.37876 * 120.00276 * 92.60594 * 12 10 9 15 15 N 1.31514 * 119.99821 * 173.51947 * 14 12 10 16 16 Si 1.86798 * 119.99943 * 353.52115 * 14 12 10 17 17 H 1.48500 * 109.47286 * 87.32166 * 16 14 12 18 18 H 1.48501 * 109.47016 * 207.32110 * 16 14 12 19 19 H 1.48500 * 109.46959 * 327.32121 * 16 14 12 20 20 C 1.47424 * 125.65191 * 179.72486 * 7 5 4 21 21 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47717 * 300.00523 * 1 2 3 23 23 H 1.09002 * 109.46722 * 60.00366 * 1 2 3 24 24 H 1.08998 * 109.46993 * 239.99319 * 2 1 3 25 25 H 1.09003 * 109.47109 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46843 * 300.00062 * 3 2 1 27 27 H 1.09005 * 109.46999 * 59.99841 * 3 2 1 28 28 H 0.96994 * 119.99464 * 264.99974 * 4 2 1 29 29 H 1.08997 * 109.88690 * 298.39941 * 8 7 5 30 30 H 1.08998 * 109.88419 * 59.56683 * 8 7 5 31 31 H 1.08997 * 110.85184 * 219.67763 * 9 8 7 32 32 H 1.08996 * 110.51352 * 96.45363 * 9 8 7 33 33 H 0.96701 * 114.00266 * 168.39868 * 11 10 9 34 34 H 0.97006 * 119.99669 * 179.97438 * 15 14 12 35 35 H 1.09001 * 110.36567 * 322.92603 * 20 7 5 36 36 H 1.09004 * 110.36231 * 85.13606 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -2.0322 1.1945 6 8 1.8574 -2.6694 0.2003 7 7 2.5908 -2.6681 2.2968 8 6 2.9800 -2.0234 3.5596 9 6 3.3910 -3.1438 4.5383 10 6 2.6799 -4.3942 3.9566 11 8 1.3177 -4.4540 4.3841 12 6 3.4153 -5.6562 4.3275 13 1 4.2205 -6.0151 3.7037 14 6 3.0601 -6.3525 5.4633 15 7 3.6128 -7.5180 5.7197 16 14 1.7940 -5.6406 6.6377 17 1 0.4325 -6.0395 6.1991 18 1 2.0439 -6.1569 8.0074 19 1 1.8990 -4.1593 6.6403 20 6 2.7727 -4.1246 2.4340 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.2489 -0.1823 1.9895 29 1 3.8206 -1.3509 3.3888 30 1 2.1355 -1.4683 3.9680 31 1 3.0327 -2.9300 5.5452 32 1 4.4726 -3.2778 4.5329 33 1 0.7858 -5.1095 3.9124 34 1 3.3632 -8.0078 6.5190 35 1 1.9818 -4.6571 1.9056 36 1 3.7496 -4.4224 2.0531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591892351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:53 Heat of formation + Delta-G solvation = -105.732262 kcal Electronic energy + Delta-G solvation = -18283.666932 eV Core-core repulsion = 15380.716206 eV Total energy + Delta-G solvation = -2902.950726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38420 -39.51596 -36.97074 -36.30646 -34.45536 -32.81969 -31.24517 -29.88795 -28.06770 -27.03130 -24.22539 -22.30243 -21.50640 -21.09030 -19.57402 -18.92807 -17.40878 -17.01032 -16.96634 -16.51916 -15.70287 -15.62146 -15.18702 -14.86456 -14.53959 -14.03855 -13.96746 -13.67209 -13.31876 -13.19574 -13.09596 -13.02770 -12.74489 -12.29557 -12.27933 -12.21039 -11.95076 -11.87747 -11.32841 -11.21477 -10.63768 -10.41012 -10.20496 -9.42141 -8.33534 -6.47367 1.51526 1.53680 1.63998 1.75493 2.13813 2.46509 2.97614 3.06416 3.49196 3.83634 3.97010 4.08659 4.18394 4.27864 4.35499 4.43141 4.60566 4.75406 4.77661 4.82904 4.92990 4.96558 5.03311 5.18008 5.22089 5.27735 5.35571 5.39328 5.54260 5.64195 6.05334 6.13586 6.58561 6.89360 7.03397 7.30597 7.56523 8.79533 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.046780 B = 0.005950 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.404009 B = 4704.568547 C = 4787.651418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 C -0.148 4.148 4 N -0.727 5.727 5 C 0.713 3.287 6 O -0.641 6.641 7 N -0.632 5.632 8 C 0.108 3.892 9 C -0.118 4.118 10 C 0.217 3.783 11 O -0.559 6.559 12 C -0.549 4.549 13 H 0.044 0.956 14 C 0.026 3.974 15 N -0.937 5.937 16 Si 1.011 2.989 17 H -0.288 1.288 18 H -0.337 1.337 19 H -0.253 1.253 20 C 0.117 3.883 21 H 0.027 0.973 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.408 0.592 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.379 0.621 34 H 0.267 0.733 35 H 0.056 0.944 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 19.639 -5.828 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 C -0.206 4.206 4 N -0.384 5.384 5 C 0.415 3.585 6 O -0.524 6.524 7 N -0.369 5.369 8 C -0.014 4.014 9 C -0.156 4.156 10 C 0.176 3.824 11 O -0.368 6.368 12 C -0.587 4.587 13 H 0.062 0.938 14 C -0.174 4.174 15 N -0.575 5.575 16 Si 0.844 3.156 17 H -0.215 1.215 18 H -0.269 1.269 19 H -0.179 1.179 20 C -0.007 4.007 21 H 0.046 0.954 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.244 0.756 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.228 0.772 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.231 19.588 -6.152 20.963 hybrid contribution -0.330 -1.005 0.486 1.164 sum -4.561 18.583 -5.667 19.956 Atomic orbital electron populations 1.22167 0.95236 1.00971 1.03353 1.20957 0.94224 0.93828 0.86668 1.22014 1.01743 0.92503 1.04347 1.45187 1.71103 1.03771 1.18320 1.15700 0.78071 0.82813 0.81873 1.90848 1.59862 1.67067 1.34611 1.47651 1.68406 1.08005 1.12842 1.22132 1.00478 0.95815 0.82956 1.22862 1.00852 0.92888 0.99039 1.20130 0.79650 0.93723 0.88870 1.86061 1.23316 1.63301 1.64074 1.21349 1.19036 1.08382 1.09964 0.93776 1.25865 0.98130 0.94046 0.99345 1.70092 1.45302 1.14433 1.27666 0.84670 0.77762 0.79308 0.73812 1.21526 1.26918 1.17856 1.22614 1.00259 0.79483 0.98377 0.95408 0.91396 0.89719 0.91962 0.91886 0.89246 0.90597 0.75568 0.89222 0.90405 0.89983 0.89662 0.77195 0.92399 0.92549 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.48 71.98 0.68 -2.48 16 2 C 0.15 3.08 3.18 44.99 0.14 3.22 16 3 C -0.15 -1.81 9.38 71.98 0.68 -1.13 16 4 N -0.73 -17.93 5.04 -457.81 -2.31 -20.24 16 5 C 0.71 25.09 8.45 179.06 1.51 26.60 16 6 O -0.64 -28.04 16.26 -3.99 -0.06 -28.10 16 7 N -0.63 -22.10 3.33 -829.73 -2.76 -24.86 16 8 C 0.11 3.07 6.15 86.73 0.53 3.60 16 9 C -0.12 -4.24 5.90 31.79 0.19 -4.06 16 10 C 0.22 9.34 0.70 -10.15 -0.01 9.33 16 11 O -0.56 -23.31 8.52 -148.98 -1.27 -24.58 16 12 C -0.55 -29.41 8.89 25.60 0.23 -29.18 16 13 H 0.04 2.64 8.00 -2.91 -0.02 2.61 16 14 C 0.03 1.45 5.46 84.65 0.46 1.91 16 15 N -0.94 -56.75 13.96 21.45 0.30 -56.45 16 16 Si 1.01 47.38 24.93 68.60 1.71 49.09 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 18 H -0.34 -16.27 7.11 99.48 0.71 -15.56 16 19 H -0.25 -11.09 5.42 99.48 0.54 -10.55 16 20 C 0.12 4.81 6.07 86.85 0.53 5.33 16 21 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.41 7.66 7.59 -92.71 -0.70 6.95 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.93 6.65 -2.39 -0.02 2.91 16 32 H 0.08 3.04 8.03 -2.39 -0.02 3.02 16 33 H 0.38 14.48 8.98 -74.06 -0.67 13.81 16 34 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 35 H 0.06 2.43 8.02 -2.39 -0.02 2.42 16 36 H 0.06 2.44 7.99 -2.38 -0.02 2.42 16 Total: -1.00 -71.14 291.61 0.10 -71.04 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.46 Total: 20.95 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 4.95 Total: 13.15 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -4.77 Total: -101.55 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -1.33 Total: -52.68 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.71 Total: 49.09 kcal Total: -71.14 0.10 -71.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591892351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.691 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds