Wall clock time and date at job start Sun Mar 29 2020 22:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00046 * 2 1 4 4 C 1.52997 * 115.55280 * 325.58985 * 3 2 1 5 5 C 1.53002 * 117.49623 * 111.25899 * 3 2 1 6 6 C 1.53003 * 117.49733 * 179.91559 * 3 2 1 7 7 H 1.09000 * 117.50011 * 145.00595 * 6 3 2 8 8 N 1.46496 * 117.50331 * 359.97438 * 6 3 2 9 9 C 1.34772 * 120.00311 * 154.99401 * 8 6 3 10 10 O 1.21591 * 120.00013 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00193 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00139 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.46990 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00408 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99885 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99868 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00100 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47200 * 89.99786 * 18 16 14 20 20 H 1.48498 * 109.47057 * 210.00085 * 18 16 14 21 21 H 1.48501 * 109.47074 * 329.99782 * 18 16 14 22 22 H 1.08998 * 109.47488 * 59.99250 * 1 2 3 23 23 H 1.09001 * 109.47117 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46832 * 299.99047 * 1 2 3 25 25 H 1.09002 * 109.47153 * 34.41255 * 4 3 2 26 26 H 1.09001 * 109.46832 * 274.41446 * 4 3 2 27 27 H 1.09004 * 109.47261 * 154.41428 * 4 3 2 28 28 H 1.09003 * 117.49882 * 215.00643 * 5 3 2 29 29 H 1.09002 * 117.49659 * 0.02562 * 5 3 2 30 30 H 0.97002 * 119.99746 * 335.00785 * 8 6 3 31 31 H 0.96996 * 120.00305 * 0.02562 * 11 9 8 32 32 H 1.09003 * 109.47062 * 300.00538 * 12 11 9 33 33 H 1.09002 * 109.47146 * 60.00022 * 12 11 9 34 34 H 1.08999 * 109.46928 * 300.00078 * 13 12 11 35 35 H 1.08997 * 109.46687 * 59.99943 * 13 12 11 36 36 H 0.97002 * 119.99956 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2383 2.3715 -0.7800 5 6 2.7471 1.7506 1.2648 6 6 3.5374 1.3988 0.0020 7 1 3.9922 2.2197 -0.5524 8 7 4.2919 0.1431 0.0043 9 6 5.5463 0.1096 -0.4873 10 8 6.0520 1.1219 -0.9323 11 7 6.2402 -1.0457 -0.4856 12 6 7.6041 -1.0819 -1.0194 13 6 8.1609 -2.5020 -0.9003 14 6 9.5640 -2.5390 -1.4489 15 1 10.0134 -1.6398 -1.8435 16 6 10.2736 -3.7212 -1.4480 17 7 9.7260 -4.8164 -0.9679 18 14 12.0130 -3.7670 -2.1274 19 1 12.9782 -3.4755 -1.0370 20 1 12.2905 -5.1142 -2.6871 21 1 12.1533 -2.7476 -3.1981 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.1684 2.1822 -0.6928 26 1 1.5292 2.3354 -1.8299 27 1 1.4673 3.3565 -0.3732 28 1 2.6819 2.8030 1.5413 29 1 2.7888 1.0475 2.0967 30 1 3.8885 -0.6644 0.3596 31 1 5.8368 -1.8533 -0.1309 32 1 7.5919 -0.7835 -2.0678 33 1 8.2341 -0.3955 -0.4536 34 1 8.1730 -2.8007 0.1479 35 1 7.5308 -3.1880 -1.4663 36 1 10.2254 -5.6480 -0.9670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595581261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:05 Heat of formation + Delta-G solvation = -53.993451 kcal Electronic energy + Delta-G solvation = -17002.826311 eV Core-core repulsion = 14102.119148 eV Total energy + Delta-G solvation = -2900.707163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97430 -38.79941 -35.79817 -34.67053 -33.03332 -32.43325 -29.50793 -28.63291 -26.82429 -24.74718 -22.36362 -20.94185 -20.57830 -20.45298 -18.03415 -17.22439 -16.29555 -15.65882 -15.50759 -15.05783 -14.90542 -14.50023 -14.08019 -13.75060 -13.49658 -13.31448 -13.17060 -12.43550 -12.25733 -12.15101 -11.64583 -11.46680 -11.15126 -11.02480 -10.92522 -10.60113 -10.27019 -9.92424 -9.54586 -9.41271 -9.22542 -8.74616 -8.43453 -8.17333 -6.05850 -4.08363 2.93166 3.18367 3.32247 3.38191 3.42875 3.52469 3.82865 4.38174 4.47251 4.57119 4.67968 4.80567 5.03478 5.09613 5.25458 5.31212 5.36869 5.42577 5.46634 5.55651 5.73370 5.80703 6.34832 6.44233 6.62345 6.81837 6.96827 7.04225 7.31098 7.61356 7.67720 7.93575 8.29714 8.47884 8.96369 9.03134 9.56163 11.05862 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.052343 B = 0.003618 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.805034 B = 7737.633295 C = 8049.375495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.023 3.977 4 C -0.144 4.144 5 C -0.211 4.211 6 C 0.137 3.863 7 H 0.144 0.856 8 N -0.718 5.718 9 C 0.702 3.298 10 O -0.599 6.599 11 N -0.737 5.737 12 C 0.140 3.860 13 C 0.012 3.988 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.402 0.598 31 H 0.394 0.606 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.466 10.554 3.768 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C -0.019 4.019 4 C -0.201 4.201 5 C -0.251 4.251 6 C 0.029 3.971 7 H 0.162 0.838 8 N -0.371 5.371 9 C 0.402 3.598 10 O -0.478 6.478 11 N -0.390 5.390 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.066 0.934 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.236 0.764 31 H 0.227 0.773 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.778 11.095 3.351 22.067 hybrid contribution 0.269 -0.807 0.148 0.864 sum -18.509 10.288 3.499 21.463 Atomic orbital electron populations 1.22808 0.81041 1.02769 1.00183 1.87888 1.19896 1.24529 1.94376 1.22599 0.93502 0.85646 1.00105 1.21808 1.00247 0.97310 1.00753 1.24310 1.04394 1.02741 0.93607 1.21791 0.86322 0.89342 0.99656 0.83846 1.44368 1.14285 1.11256 1.67200 1.16013 0.80412 0.84549 0.78819 1.90872 1.69831 1.33587 1.53531 1.45521 1.17629 1.09417 1.66414 1.21606 0.78100 1.01093 0.97461 1.19330 0.96153 0.89159 0.97874 1.21058 0.98645 0.95407 1.40777 0.92199 1.25001 0.98462 0.95557 0.95318 1.69962 1.37465 0.99891 1.46052 0.86506 0.84390 0.77326 0.79294 1.20579 1.21208 1.19709 0.93420 0.89482 0.93911 0.91129 0.91008 0.90763 0.87648 0.87965 0.76400 0.77283 0.92736 0.92734 0.95954 0.95923 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.05 101.05 1.02 1.23 16 2 O -0.35 -3.82 10.39 -35.23 -0.37 -4.19 16 3 C 0.02 0.24 3.02 -90.62 -0.27 -0.04 16 4 C -0.14 -1.09 9.49 37.16 0.35 -0.74 16 5 C -0.21 -2.06 10.05 -26.69 -0.27 -2.33 16 6 C 0.14 1.72 6.16 -67.89 -0.42 1.30 16 7 H 0.14 1.92 7.40 -51.93 -0.38 1.53 16 8 N -0.72 -10.37 5.47 -58.64 -0.32 -10.69 16 9 C 0.70 13.05 8.57 -86.92 -0.74 12.30 16 10 O -0.60 -13.26 15.91 5.29 0.08 -13.18 16 11 N -0.74 -13.74 5.56 -65.22 -0.36 -14.11 16 12 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 18 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.05 0.31 6.47 -51.93 -0.34 -0.03 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.44 5.78 -51.93 -0.30 0.14 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.46 7.90 -51.93 -0.41 0.05 16 28 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.40 5.10 8.41 -40.82 -0.34 4.76 16 31 H 0.39 6.41 8.49 -40.82 -0.35 6.06 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -32.95 307.76 -6.99 -39.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.46 Total: 5.15 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.91 Total: 1.56 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.05 Total: -50.52 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.28 Total: -17.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.95 -6.99 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595581261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.056 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds