Wall clock time and date at job start Sun Mar 29 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99806 * 3 2 1 6 6 H 1.48498 * 109.47127 * 59.99700 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 9 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47198 * 179.97438 * 15 14 12 17 17 H 1.08997 * 112.84617 * 316.20074 * 16 15 14 18 18 C 1.53784 * 113.60713 * 87.50254 * 16 15 14 19 19 C 1.53783 * 87.07665 * 139.98538 * 18 16 15 20 20 H 1.08998 * 113.62182 * 89.11423 * 19 18 16 21 21 O 1.42899 * 113.68905 * 220.00926 * 19 18 16 22 22 C 1.53779 * 87.08233 * 334.56225 * 19 18 16 23 23 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 25 25 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 26 26 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 27 27 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 28 28 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 29 29 H 0.97000 * 119.99549 * 359.97438 * 14 12 11 30 30 H 1.09000 * 109.47602 * 299.99940 * 15 14 12 31 31 H 1.09006 * 109.46868 * 59.99976 * 15 14 12 32 32 H 1.09005 * 113.61454 * 254.52579 * 18 16 15 33 33 H 1.08995 * 113.61676 * 25.43732 * 18 16 15 34 34 H 0.96707 * 113.99960 * 277.53211 * 21 19 18 35 35 H 1.08998 * 113.62134 * 270.89033 * 22 19 18 36 36 H 1.09003 * 113.61159 * 139.97626 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.1863 -6.0980 -0.0023 13 8 3.4023 -6.0981 -0.0036 14 7 1.5124 -7.2652 -0.0064 15 6 2.2449 -8.5339 -0.0118 16 6 1.2506 -9.6969 -0.0150 17 1 0.4253 -9.5499 0.6816 18 6 0.8022 -10.1199 -1.4239 19 6 0.8905 -11.5735 -0.9300 20 1 -0.0341 -11.9404 -0.4844 21 8 1.4378 -12.4752 -1.8941 22 6 1.9172 -11.0777 0.1019 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5562 0.8919 26 1 2.8724 -3.6040 0.8910 27 1 2.8711 -3.6048 -0.8890 28 1 0.5425 -4.9308 0.0039 29 1 0.5424 -7.2651 -0.0050 30 1 2.8709 -8.5883 -0.9025 31 1 2.8721 -8.5951 0.8775 32 1 -0.2110 -9.8042 -1.6729 33 1 1.5252 -9.8788 -2.2031 34 1 0.7968 -12.7907 -2.5459 35 1 2.9452 -11.0983 -0.2601 36 1 1.8042 -11.5351 1.0848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602286727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:38 Heat of formation + Delta-G solvation = -76.546294 kcal Electronic energy + Delta-G solvation = -16704.177882 eV Core-core repulsion = 13802.492755 eV Total energy + Delta-G solvation = -2901.685128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03304 -39.14448 -35.87579 -34.80168 -33.81950 -32.76644 -29.73479 -27.56812 -26.07450 -24.57667 -22.56368 -21.02086 -20.60990 -19.83159 -18.20586 -17.52597 -16.39702 -16.00184 -15.73292 -15.32149 -14.63789 -14.49120 -14.29427 -13.74576 -13.50866 -13.24520 -12.77348 -12.49279 -12.27759 -11.86052 -11.75054 -11.16617 -11.15413 -11.02780 -10.63729 -10.59952 -10.29982 -10.13948 -9.89533 -9.53495 -9.22707 -8.96512 -8.46973 -8.20989 -6.08151 -4.10464 3.06696 3.29549 3.37145 3.42918 3.63883 3.85430 4.18324 4.24820 4.40527 4.46187 4.53468 4.79001 4.96997 5.07069 5.29138 5.40022 5.43350 5.55309 5.60367 5.77267 5.85168 6.08248 6.32926 6.42711 6.65564 6.80627 7.03822 7.27700 7.29282 7.59245 7.65294 7.91573 8.28045 8.47660 8.94994 9.04240 9.54282 11.03640 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.072061 B = 0.003125 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.465652 B = 8957.575836 C = 9139.867939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.697 3.303 13 O -0.599 6.599 14 N -0.753 5.753 15 C 0.153 3.847 16 C -0.122 4.122 17 H 0.099 0.901 18 C -0.164 4.164 19 C 0.074 3.926 20 H 0.081 0.919 21 O -0.561 6.561 22 C -0.119 4.119 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.393 0.607 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.377 0.623 35 H 0.094 0.906 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -22.183 -1.153 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.393 5.393 12 C 0.397 3.603 13 O -0.478 6.478 14 N -0.410 5.410 15 C 0.028 3.972 16 C -0.141 4.141 17 H 0.117 0.883 18 C -0.202 4.202 19 C 0.015 3.985 20 H 0.099 0.901 21 O -0.366 6.366 22 C -0.157 4.157 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.226 0.774 29 H 0.227 0.773 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.224 0.776 35 H 0.113 0.887 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.404 -21.922 -0.804 21.982 hybrid contribution -1.158 0.894 -0.299 1.493 sum -2.562 -21.028 -1.103 21.212 Atomic orbital electron populations 1.69969 1.06095 1.26719 1.50634 1.25001 0.94899 0.99428 0.95043 0.86452 0.80198 0.83316 0.77583 1.19557 1.20957 1.20951 1.21103 0.93329 0.90363 1.51011 0.92154 1.19329 0.94268 0.91119 0.97781 1.21580 0.95626 0.80448 1.00631 1.45530 1.09799 1.05352 1.78596 1.16088 0.85657 0.80531 0.78058 1.90890 1.11819 1.86706 1.58399 1.45112 1.09369 1.04722 1.81767 1.21057 0.93375 0.80455 1.02278 1.22577 0.99218 0.94208 0.98124 0.88291 1.23785 1.02459 0.96616 0.97306 1.23358 0.96755 0.87966 0.90411 0.90090 1.86540 1.40625 1.65046 1.44405 1.23041 0.99938 0.94102 0.98618 0.92940 0.95995 0.95976 0.92811 0.92818 0.77445 0.77345 0.91621 0.91647 0.91124 0.88900 0.77563 0.88718 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.36 5.56 -65.23 -0.36 -13.73 16 12 C 0.70 12.55 8.57 -86.92 -0.74 11.81 16 13 O -0.60 -13.34 16.34 5.28 0.09 -13.26 16 14 N -0.75 -9.65 5.56 -65.22 -0.36 -10.01 16 15 C 0.15 1.73 5.51 -4.04 -0.02 1.70 16 16 C -0.12 -0.95 3.76 -89.80 -0.34 -1.29 16 17 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 18 C -0.16 -1.22 7.47 -25.92 -0.19 -1.41 16 19 C 0.07 0.52 5.21 -25.92 -0.14 0.38 16 20 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 21 O -0.56 -4.50 13.67 -35.23 -0.48 -4.98 16 22 C -0.12 -0.91 7.47 -25.92 -0.19 -1.10 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.39 6.05 8.49 -40.82 -0.35 5.70 16 29 H 0.39 3.87 8.49 -40.82 -0.35 3.53 16 30 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 34 H 0.38 1.41 9.12 45.56 0.42 1.83 16 35 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 307.79 15.07 4.64 4.64 Total: -1.00 -34.15 307.79 -7.83 -41.98 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.86 Total: 4.42 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.20 Total: -0.03 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.01 Total: -49.28 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.40 Total: -18.23 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.15 -7.83 -41.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602286727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.567 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds