Wall clock time and date at job start Sun Mar 29 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99806 * 3 2 1 6 6 H 1.48498 * 109.47127 * 59.99700 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 9 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47198 * 179.97438 * 15 14 12 17 17 H 1.08997 * 112.84617 * 316.20074 * 16 15 14 18 18 C 1.53784 * 113.60713 * 87.50254 * 16 15 14 19 19 C 1.53783 * 87.07665 * 139.98538 * 18 16 15 20 20 H 1.08998 * 113.62182 * 89.11423 * 19 18 16 21 21 O 1.42899 * 113.68905 * 220.00926 * 19 18 16 22 22 C 1.53779 * 87.08233 * 334.56225 * 19 18 16 23 23 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 25 25 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 26 26 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 27 27 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 28 28 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 29 29 H 0.97000 * 119.99549 * 359.97438 * 14 12 11 30 30 H 1.09000 * 109.47602 * 299.99940 * 15 14 12 31 31 H 1.09006 * 109.46868 * 59.99976 * 15 14 12 32 32 H 1.09005 * 113.61454 * 254.52579 * 18 16 15 33 33 H 1.08995 * 113.61676 * 25.43732 * 18 16 15 34 34 H 0.96707 * 113.99960 * 277.53211 * 21 19 18 35 35 H 1.08998 * 113.62134 * 270.89033 * 22 19 18 36 36 H 1.09003 * 113.61159 * 139.97626 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.1863 -6.0980 -0.0023 13 8 3.4023 -6.0981 -0.0036 14 7 1.5124 -7.2652 -0.0064 15 6 2.2449 -8.5339 -0.0118 16 6 1.2506 -9.6969 -0.0150 17 1 0.4253 -9.5499 0.6816 18 6 0.8022 -10.1199 -1.4239 19 6 0.8905 -11.5735 -0.9300 20 1 -0.0341 -11.9404 -0.4844 21 8 1.4378 -12.4752 -1.8941 22 6 1.9172 -11.0777 0.1019 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5562 0.8919 26 1 2.8724 -3.6040 0.8910 27 1 2.8711 -3.6048 -0.8890 28 1 0.5425 -4.9308 0.0039 29 1 0.5424 -7.2651 -0.0050 30 1 2.8709 -8.5883 -0.9025 31 1 2.8721 -8.5951 0.8775 32 1 -0.2110 -9.8042 -1.6729 33 1 1.5252 -9.8788 -2.2031 34 1 0.7968 -12.7907 -2.5459 35 1 2.9452 -11.0983 -0.2601 36 1 1.8042 -11.5351 1.0848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602286727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:37 Heat of formation + Delta-G solvation = -104.089102 kcal Electronic energy + Delta-G solvation = -16705.372228 eV Core-core repulsion = 13802.492755 eV Total energy + Delta-G solvation = -2902.879473 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12180 -40.13440 -36.87189 -36.32077 -35.00999 -34.69648 -31.55506 -28.69551 -26.68111 -26.44053 -23.47887 -22.78453 -22.01258 -20.58248 -19.36270 -18.44424 -18.30627 -17.24459 -16.81836 -16.49662 -16.29011 -15.67766 -15.46276 -15.14175 -14.80153 -14.56729 -14.26910 -13.51574 -13.39026 -13.20097 -12.94280 -12.58090 -12.50201 -12.37716 -12.24088 -11.80175 -11.67928 -11.48991 -11.24639 -11.18820 -10.67090 -10.60679 -10.33045 -9.69641 -8.23925 -6.33912 1.41556 1.42457 1.55667 1.77902 2.17100 2.41908 3.10996 3.27924 3.40253 3.60754 3.67941 3.88209 4.02648 4.28812 4.41560 4.49023 4.52574 4.71124 4.83303 4.85819 4.87073 4.88691 5.05717 5.20183 5.31705 5.42477 5.52389 5.57613 5.60174 5.79706 6.06927 6.18028 6.79442 6.94787 7.15463 7.35482 7.61121 8.88270 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.072061 B = 0.003125 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.465652 B = 8957.575836 C = 9139.867939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.694 3.306 13 O -0.644 6.644 14 N -0.729 5.729 15 C 0.151 3.849 16 C -0.111 4.111 17 H 0.122 0.878 18 C -0.163 4.163 19 C 0.079 3.921 20 H 0.107 0.893 21 O -0.583 6.583 22 C -0.125 4.125 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.010 0.990 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.408 0.592 29 H 0.412 0.588 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.395 0.605 35 H 0.077 0.923 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 -22.859 -0.952 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.388 5.388 12 C 0.394 3.606 13 O -0.526 6.526 14 N -0.386 5.386 15 C 0.027 3.973 16 C -0.129 4.129 17 H 0.140 0.860 18 C -0.201 4.201 19 C 0.020 3.980 20 H 0.124 0.876 21 O -0.392 6.392 22 C -0.163 4.163 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.243 0.757 29 H 0.248 0.752 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.245 0.755 35 H 0.096 0.904 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.370 -22.650 -0.614 22.781 hybrid contribution -0.895 1.027 -0.379 1.414 sum -3.265 -21.622 -0.994 21.890 Atomic orbital electron populations 1.70062 1.07500 1.27935 1.51119 1.25865 0.95815 1.03070 0.94425 0.85389 0.78939 0.78754 0.77922 1.19054 1.20188 1.20154 1.21500 0.93596 0.91952 1.51394 0.92384 1.19126 0.94205 0.91581 0.96408 1.21066 0.94656 0.81224 0.99506 1.45202 1.10384 1.04383 1.78790 1.16239 0.85151 0.81429 0.77765 1.90861 1.13979 1.87425 1.60377 1.44936 1.10310 1.03576 1.79802 1.21177 0.94262 0.80792 1.01052 1.22541 0.98823 0.92485 0.99086 0.86013 1.23749 1.02675 0.97298 0.96399 1.23415 0.97167 0.87496 0.89901 0.87571 1.86494 1.42194 1.65238 1.45242 1.23076 0.99354 0.94143 0.99742 0.92528 0.97251 0.97182 0.93919 0.94006 0.75695 0.75150 0.93294 0.92600 0.89610 0.90856 0.75546 0.90450 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.55 -30.82 9.11 25.60 0.23 -30.58 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.16 7.10 5.61 86.38 0.48 7.59 16 11 N -0.73 -26.19 5.56 -478.54 -2.66 -28.85 16 12 C 0.69 24.73 8.57 179.05 1.53 26.27 16 13 O -0.64 -29.02 16.34 -4.01 -0.07 -29.08 16 14 N -0.73 -17.73 5.56 -478.52 -2.66 -20.39 16 15 C 0.15 3.31 5.51 86.38 0.48 3.78 16 16 C -0.11 -1.49 3.76 -10.26 -0.04 -1.53 16 17 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 18 C -0.16 -2.11 7.47 31.12 0.23 -1.88 16 19 C 0.08 0.92 5.21 31.12 0.16 1.08 16 20 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 21 O -0.58 -8.41 13.67 -148.98 -2.04 -10.45 16 22 C -0.13 -1.70 7.47 31.12 0.23 -1.47 16 23 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.41 12.11 8.49 -92.71 -0.79 11.33 16 29 H 0.41 7.10 8.49 -92.71 -0.79 6.31 16 30 H 0.05 1.25 7.84 -2.39 -0.02 1.23 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 1.26 7.90 -2.39 -0.02 1.24 16 34 H 0.39 2.23 9.12 -74.05 -0.68 1.56 16 35 H 0.08 1.32 8.10 -2.39 -0.02 1.31 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.27 307.79 -2.34 -75.61 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -1.15 Total: 15.83 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 3.93 Total: 5.50 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -5.04 Total: -103.29 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -2.10 Total: -39.53 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.27 -2.34 -75.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602286727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.480 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds