Wall clock time and date at job start Sun Mar 29 2020 23:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47711 * 2 1 4 4 H 1.08999 * 109.47342 * 306.94716 * 3 2 1 5 5 C 1.50703 * 109.47304 * 186.93981 * 3 2 1 6 6 H 1.07993 * 120.00294 * 239.99891 * 5 3 2 7 7 C 1.37880 * 119.99676 * 60.00582 * 5 3 2 8 8 N 1.31514 * 119.99840 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99887 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47380 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47079 * 119.99786 * 9 7 5 12 12 H 1.48492 * 109.47238 * 239.99955 * 9 7 5 13 13 N 1.46507 * 109.46620 * 66.94508 * 3 2 1 14 14 C 1.34776 * 119.99965 * 254.65710 * 13 3 2 15 15 O 1.21290 * 119.99947 * 5.24924 * 14 13 3 16 16 C 1.50697 * 120.00396 * 185.24590 * 14 13 3 17 17 H 1.09003 * 109.86662 * 52.06936 * 16 14 13 18 18 O 1.43741 * 109.88199 * 173.07828 * 16 14 13 19 19 C 1.44379 * 106.97815 * 145.94075 * 18 16 14 20 20 C 1.54997 * 103.48722 * 319.93941 * 19 18 16 21 21 C 1.54098 * 109.87963 * 291.06755 * 16 14 13 22 22 H 1.08993 * 110.49365 * 119.86746 * 21 16 14 23 23 N 1.46904 * 110.48647 * 357.21443 * 21 16 14 24 24 H 1.09000 * 109.47018 * 301.21230 * 1 2 3 25 25 H 1.09006 * 109.46971 * 61.20072 * 1 2 3 26 26 H 1.08996 * 109.47833 * 181.20789 * 1 2 3 27 27 H 1.09005 * 109.47065 * 239.99909 * 2 1 3 28 28 H 1.08998 * 109.47386 * 120.00702 * 2 1 3 29 29 H 0.96996 * 119.99747 * 180.02562 * 8 7 5 30 30 H 0.96995 * 120.00314 * 74.66111 * 13 3 2 31 31 H 1.09000 * 110.62075 * 78.43610 * 19 18 16 32 32 H 1.08997 * 110.61889 * 201.43890 * 19 18 16 33 33 H 1.09000 * 110.91079 * 155.22091 * 20 19 18 34 34 H 1.09001 * 110.90478 * 278.82455 * 20 19 18 35 35 H 1.00904 * 111.00080 * 173.57133 * 23 21 16 36 36 H 1.00897 * 111.00299 * 297.53162 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5789 1.9909 -0.8213 5 6 3.5373 1.4458 -0.1717 6 1 4.1672 1.8816 0.5896 7 6 4.1030 0.8925 -1.3009 8 7 3.3359 0.3614 -2.2278 9 14 5.9587 0.8973 -1.5140 10 1 6.5904 1.5487 -0.3386 11 1 6.4476 -0.5005 -1.6268 12 1 6.3135 1.6467 -2.7459 13 7 1.6929 2.0831 1.2710 14 6 0.6919 2.9842 1.3201 15 8 0.0166 3.1947 0.3348 16 6 0.4115 3.7301 2.5991 17 1 1.3284 4.1894 2.9687 18 8 -0.5828 4.7419 2.3671 19 6 -1.3715 4.8421 3.5722 20 6 -1.5343 3.3676 4.0214 21 6 -0.1530 2.7625 3.6572 22 1 0.4957 2.7334 4.5325 23 7 -0.3137 1.4170 3.0897 24 1 -0.3633 0.5325 0.8789 25 1 -0.3633 0.4951 -0.9006 26 1 -0.3634 -1.0273 0.0217 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7338 -0.0281 -3.0220 30 1 2.1835 1.8588 2.0771 31 1 -0.8418 5.4181 4.3309 32 1 -2.3431 5.2879 3.3591 33 1 -1.7139 3.3054 5.0947 34 1 -2.3338 2.8777 3.4655 35 1 -0.5830 0.7542 3.8013 36 1 -0.9777 1.4218 2.3301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705404118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:37 Heat of formation + Delta-G solvation = -82.720828 kcal Electronic energy + Delta-G solvation = -18592.309994 eV Core-core repulsion = 15690.357119 eV Total energy + Delta-G solvation = -2901.952875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07190 -37.80240 -34.93281 -34.31202 -32.15946 -30.91910 -30.13349 -28.16126 -26.63779 -23.46675 -22.50489 -21.51331 -19.94571 -19.14614 -17.40419 -17.05583 -15.91996 -15.70975 -14.95879 -14.82759 -14.55551 -14.03016 -13.89442 -13.37561 -12.85215 -12.80912 -12.53158 -12.23688 -11.49012 -11.40052 -11.25182 -11.22416 -11.16516 -10.88337 -10.71611 -10.19246 -9.93719 -9.91199 -9.54299 -9.05882 -8.70367 -8.63303 -8.32652 -7.58115 -6.01168 -4.09425 3.29773 3.37208 3.39797 3.48158 3.76870 4.21242 4.37871 4.52021 4.65076 4.88928 4.92080 5.12545 5.26326 5.30424 5.52653 5.61407 5.69002 5.77381 5.84123 6.42267 6.53986 6.72035 6.84889 7.06096 7.15265 7.29003 7.41882 7.46889 7.63433 7.76450 7.86293 8.12534 8.31892 8.88524 8.92407 9.35983 9.58958 11.03586 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.006575 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.111582 B = 4257.545693 C = 4523.446303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.685 5.685 14 C 0.520 3.480 15 O -0.549 6.549 16 C 0.054 3.946 17 H 0.089 0.911 18 O -0.347 6.347 19 C 0.046 3.954 20 C -0.191 4.191 21 C 0.071 3.929 22 H 0.100 0.900 23 N -0.828 5.828 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.024 0.976 27 H 0.096 0.904 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.388 0.612 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.342 0.658 36 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 2.864 14.147 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.165 3.835 4 H 0.073 0.927 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.332 5.332 14 C 0.303 3.697 15 O -0.428 6.428 16 C -0.008 4.008 17 H 0.107 0.893 18 O -0.264 6.264 19 C -0.032 4.032 20 C -0.231 4.231 21 C -0.042 4.042 22 H 0.118 0.882 23 N -0.360 5.360 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.220 0.780 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.156 0.844 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.818 3.085 12.832 14.855 hybrid contribution 0.255 -0.145 0.839 0.889 sum -6.563 2.940 13.671 15.447 Atomic orbital electron populations 1.21816 0.99001 0.98250 1.00877 1.21821 0.92313 0.99843 1.02046 1.18796 0.94211 0.89500 0.80974 0.92676 1.21401 0.91430 1.38664 1.05216 0.92253 1.24892 0.98237 0.95078 0.95627 1.69906 1.34614 1.38636 1.09130 0.86450 0.85279 0.77614 0.78070 1.19848 1.20999 1.21007 1.46066 1.33092 1.40835 1.13237 1.19675 0.81471 0.80531 0.88021 1.90665 1.48829 1.66712 1.36567 1.22896 0.93062 0.89282 0.95561 0.89313 1.89056 1.46314 1.56117 1.34941 1.23487 0.96269 0.95681 0.87740 1.24072 0.99121 0.97780 1.02134 1.22841 0.95188 0.89821 0.96341 0.88176 1.58899 1.57657 1.05523 1.13966 0.93347 0.93966 0.95723 0.88615 0.94879 0.92810 0.77954 0.92099 0.88996 0.90111 0.90409 0.84427 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.69 37.16 0.36 -2.68 16 2 C -0.12 -2.92 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.81 2.21 -69.08 -0.15 6.66 16 4 H 0.06 1.66 7.09 -51.93 -0.37 1.29 16 5 C -0.53 -14.32 8.82 -34.44 -0.30 -14.62 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.76 5.28 -17.82 -0.09 1.66 16 8 N -0.88 -25.29 11.29 55.43 0.63 -24.67 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.69 -14.37 3.96 -54.93 -0.22 -14.59 16 14 C 0.52 10.81 4.80 -10.99 -0.05 10.75 16 15 O -0.55 -13.95 15.92 -13.94 -0.22 -14.17 16 16 C 0.05 0.85 3.84 -27.31 -0.10 0.75 16 17 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 18 O -0.35 -5.84 10.74 -54.72 -0.59 -6.43 16 19 C 0.05 0.51 7.72 38.21 0.29 0.81 16 20 C -0.19 -1.89 6.85 -24.55 -0.17 -2.05 16 21 C 0.07 0.83 4.19 -66.01 -0.28 0.55 16 22 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 23 N -0.83 -10.36 7.09 -3.22 -0.02 -10.38 16 24 H 0.05 0.95 4.51 -51.93 -0.23 0.71 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.10 2.58 5.91 -51.93 -0.31 2.27 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 7.27 8.80 -40.82 -0.36 6.91 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.82 7.91 -51.93 -0.41 0.41 16 35 H 0.34 3.33 9.08 -39.29 -0.36 2.97 16 36 H 0.35 5.13 6.28 -39.29 -0.25 4.88 16 LS Contribution 289.57 15.07 4.36 4.36 Total: -1.00 -32.04 289.57 -6.94 -38.98 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.21 Total: 12.03 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.64 Total: -1.23 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.39 Total: -49.64 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.81 Total: -20.59 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.04 -6.94 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705404118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.744 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds