Wall clock time and date at job start Sun Mar 29 2020 22:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 H 1.09005 * 110.45346 * 32.40302 * 17 16 14 19 19 C 1.54515 * 110.51154 * 154.99830 * 17 16 14 20 20 C 1.54482 * 104.05703 * 118.64927 * 19 17 16 21 21 O 1.44426 * 104.80735 * 23.97627 * 20 19 17 22 22 C 1.44420 * 105.27453 * 319.49072 * 21 20 19 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.00897 * 111.00316 * 176.04452 * 13 11 10 29 29 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 30 30 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 31 31 H 1.08997 * 110.50913 * 237.29162 * 19 17 16 32 32 H 1.08994 * 110.50994 * 0.02562 * 19 17 16 33 33 H 1.09002 * 110.36852 * 142.81502 * 20 19 17 34 34 H 1.09004 * 110.37240 * 265.14665 * 20 19 17 35 35 H 1.08994 * 110.37388 * 281.67901 * 22 21 20 36 36 H 1.09006 * 110.36929 * 159.33999 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0067 -0.8421 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1298 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9580 -6.4586 -1.3302 17 6 3.9050 -7.5698 -1.4507 18 1 3.6850 -8.3398 -0.7111 19 6 3.8656 -8.1625 -2.8771 20 6 5.2977 -7.9443 -3.4137 21 8 6.1237 -7.8483 -2.2329 22 6 5.3561 -7.0637 -1.2944 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.1635 -5.9552 1.2521 29 1 1.3475 -5.1033 2.0511 30 1 2.6930 -5.9595 -2.1186 31 1 3.6286 -9.2258 -2.8424 32 1 3.1419 -7.6285 -3.4927 33 1 5.6069 -8.7919 -4.0254 34 1 5.3504 -7.0204 -3.9898 35 1 5.4177 -6.0048 -1.5453 36 1 5.7103 -7.2349 -0.2778 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709409975.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:06 Heat of formation + Delta-G solvation = -97.263595 kcal Electronic energy + Delta-G solvation = -17506.551577 eV Core-core repulsion = 14603.968080 eV Total energy + Delta-G solvation = -2902.583497 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33700 -38.96957 -35.32065 -34.70441 -32.81911 -31.09249 -30.11860 -28.90635 -26.32525 -23.91399 -23.07511 -21.34467 -20.74410 -19.87896 -17.43873 -16.93570 -16.32997 -16.15466 -15.52968 -15.46810 -15.04437 -14.60794 -14.33100 -13.76526 -13.49788 -13.45389 -12.43625 -12.34102 -12.08704 -11.95822 -11.63790 -11.56974 -11.26007 -10.89156 -10.70433 -10.59863 -10.18038 -10.10780 -9.82939 -9.40072 -9.16468 -9.03177 -8.38492 -8.23518 -5.95459 -3.97871 2.67272 3.07867 3.35009 3.39765 3.42138 3.82466 4.20943 4.48474 4.52204 4.67321 4.82548 4.90418 5.00990 5.07489 5.34182 5.39893 5.40520 5.48656 5.56810 5.65735 5.70755 5.78623 6.22870 6.39082 6.57345 6.61814 7.05072 7.31177 7.52034 7.73336 7.76196 7.93573 8.10808 8.22744 8.46195 9.09870 9.65439 11.15388 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.004864 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.681905 B = 5754.895858 C = 6369.116515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.551 6.551 16 N -0.723 5.723 17 C 0.111 3.889 18 H 0.101 0.899 19 C -0.163 4.163 20 C 0.044 3.956 21 O -0.374 6.374 22 C 0.033 3.967 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.334 0.666 29 H 0.348 0.652 30 H 0.404 0.596 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -15.791 -6.768 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.429 6.429 16 N -0.377 5.377 17 C 0.005 3.995 18 H 0.119 0.881 19 C -0.201 4.201 20 C -0.033 4.033 21 O -0.292 6.292 22 C -0.045 4.045 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.240 0.760 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.927 -15.517 -6.210 17.733 hybrid contribution 0.715 0.353 -0.366 0.877 sum 6.642 -15.164 -6.576 17.813 Atomic orbital electron populations 1.69966 1.05957 1.26556 1.50703 1.24985 0.94801 0.99043 0.95422 0.86708 0.79612 0.83409 0.78540 1.20382 1.21310 1.20298 1.21236 0.92855 0.91330 1.50809 0.93049 1.19011 0.93545 0.89798 0.98217 1.21665 0.98872 0.92156 1.00679 1.21854 0.93488 0.93182 0.95182 0.88372 1.58990 1.26898 1.44294 1.03260 1.22874 0.81956 0.85666 0.82506 1.90651 1.61198 1.53999 1.37027 1.46250 1.46303 1.34467 1.10697 1.22296 0.89398 0.90057 0.97798 0.88068 1.23233 0.98573 1.02713 0.95608 1.23426 0.89003 1.01963 0.88956 1.89156 1.41067 1.73431 1.25542 1.23917 0.90065 0.95846 0.94632 0.93024 0.96888 0.94642 0.92798 0.92859 0.85431 0.83774 0.76047 0.89625 0.89553 0.88851 0.91891 0.91395 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 10 C -0.10 -1.87 4.78 -26.73 -0.13 -2.00 16 11 C 0.08 1.27 3.15 -68.86 -0.22 1.05 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 N -0.81 -13.26 8.44 -5.66 -0.05 -13.31 16 14 C 0.48 7.23 7.07 -10.99 -0.08 7.15 16 15 O -0.55 -9.76 15.90 5.55 0.09 -9.67 16 16 N -0.72 -8.38 5.08 -52.29 -0.27 -8.65 16 17 C 0.11 1.19 3.48 -66.36 -0.23 0.96 16 18 H 0.10 1.24 7.55 -51.93 -0.39 0.84 16 19 C -0.16 -1.28 6.85 -25.16 -0.17 -1.45 16 20 C 0.04 0.36 7.63 37.94 0.29 0.65 16 21 O -0.37 -4.42 11.65 -35.23 -0.41 -4.83 16 22 C 0.03 0.39 7.35 37.93 0.28 0.67 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.33 4.74 9.06 -39.29 -0.36 4.38 16 29 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 30 H 0.40 3.88 8.38 -40.82 -0.34 3.54 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.56 7.70 -51.93 -0.40 0.16 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -32.44 303.23 -6.73 -39.16 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.57 Total: 7.83 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.80 Total: -5.70 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.42 Total: -47.94 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.32 Total: -14.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.44 -6.73 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709409975.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.101 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds