Wall clock time and date at job start Sun Mar 29 2020 22:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 H 1.09005 * 110.45346 * 32.40302 * 17 16 14 19 19 C 1.54515 * 110.51154 * 154.99830 * 17 16 14 20 20 C 1.54482 * 104.05703 * 118.64927 * 19 17 16 21 21 O 1.44426 * 104.80735 * 23.97627 * 20 19 17 22 22 C 1.44420 * 105.27453 * 319.49072 * 21 20 19 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.00897 * 111.00316 * 176.04452 * 13 11 10 29 29 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 30 30 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 31 31 H 1.08997 * 110.50913 * 237.29162 * 19 17 16 32 32 H 1.08994 * 110.50994 * 0.02562 * 19 17 16 33 33 H 1.09002 * 110.36852 * 142.81502 * 20 19 17 34 34 H 1.09004 * 110.37240 * 265.14665 * 20 19 17 35 35 H 1.08994 * 110.37388 * 281.67901 * 22 21 20 36 36 H 1.09006 * 110.36929 * 159.33999 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0067 -0.8421 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1298 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9580 -6.4586 -1.3302 17 6 3.9050 -7.5698 -1.4507 18 1 3.6850 -8.3398 -0.7111 19 6 3.8656 -8.1625 -2.8771 20 6 5.2977 -7.9443 -3.4137 21 8 6.1237 -7.8483 -2.2329 22 6 5.3561 -7.0637 -1.2944 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.1635 -5.9552 1.2521 29 1 1.3475 -5.1033 2.0511 30 1 2.6930 -5.9595 -2.1186 31 1 3.6286 -9.2258 -2.8424 32 1 3.1419 -7.6285 -3.4927 33 1 5.6069 -8.7919 -4.0254 34 1 5.3504 -7.0204 -3.9898 35 1 5.4177 -6.0048 -1.5453 36 1 5.7103 -7.2349 -0.2778 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709409975.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:06 Heat of formation + Delta-G solvation = -123.141046 kcal Electronic energy + Delta-G solvation = -17507.673707 eV Core-core repulsion = 14603.968080 eV Total energy + Delta-G solvation = -2903.705628 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.39204 -39.96688 -36.82916 -35.77123 -34.80369 -31.98426 -31.84526 -29.79998 -27.99860 -25.53298 -23.93382 -22.59814 -21.97685 -21.23100 -18.77165 -18.18813 -17.82066 -17.17767 -16.87851 -16.49044 -16.34501 -16.03940 -15.68997 -15.01552 -14.82880 -14.28212 -14.20818 -13.82521 -13.46274 -13.23455 -12.81209 -12.76295 -12.53345 -12.30964 -12.26526 -12.05254 -11.73839 -11.63050 -11.25332 -10.99937 -10.91180 -10.47643 -10.18952 -9.62557 -8.13024 -6.23153 1.42302 1.45012 1.46299 1.52942 2.05625 2.45363 3.03348 3.20219 3.43834 3.58303 3.75120 3.86723 3.94702 4.12149 4.18677 4.23387 4.32619 4.63486 4.74002 4.78689 4.81611 4.84004 4.95446 5.00413 5.26200 5.30311 5.58006 5.75906 5.85804 5.99827 6.10046 6.31340 6.41680 6.53573 6.95632 7.10716 7.45045 8.97942 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.004864 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.681905 B = 5754.895858 C = 6369.116515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.082 4.082 11 C 0.086 3.914 12 H 0.113 0.887 13 N -0.820 5.820 14 C 0.491 3.509 15 O -0.580 6.580 16 N -0.706 5.706 17 C 0.109 3.891 18 H 0.087 0.913 19 C -0.152 4.152 20 C 0.037 3.963 21 O -0.394 6.394 22 C 0.034 3.966 23 H 0.262 0.738 24 H -0.004 1.004 25 H 0.005 0.995 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.347 0.653 29 H 0.345 0.655 30 H 0.417 0.583 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 -16.143 -8.236 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.121 4.121 11 C -0.030 4.030 12 H 0.131 0.869 13 N -0.349 5.349 14 C 0.276 3.724 15 O -0.460 6.460 16 N -0.360 5.360 17 C 0.003 3.997 18 H 0.105 0.895 19 C -0.190 4.190 20 C -0.039 4.039 21 O -0.313 6.313 22 C -0.044 4.044 23 H 0.071 0.929 24 H 0.014 0.986 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.160 0.840 29 H 0.158 0.842 30 H 0.255 0.745 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.734 -15.885 -7.723 18.903 hybrid contribution 0.466 0.427 0.061 0.635 sum 7.200 -15.457 -7.662 18.694 Atomic orbital electron populations 1.70096 1.07609 1.27556 1.51708 1.25874 0.95664 1.02933 0.94981 0.85618 0.78354 0.78744 0.79012 1.19090 1.20955 1.19712 1.21710 0.93344 0.92783 1.50443 0.92661 1.18828 0.93897 0.91293 0.95822 1.21395 0.97729 0.92099 1.00828 1.21652 0.93720 0.91937 0.95653 0.86874 1.58969 1.27243 1.45335 1.03317 1.22450 0.81683 0.85187 0.83073 1.90648 1.62107 1.54972 1.38249 1.46099 1.45426 1.34402 1.10062 1.22341 0.88467 0.89244 0.99608 0.89488 1.23222 0.98816 1.03544 0.93438 1.23682 0.88766 1.03376 0.88062 1.89138 1.42069 1.73384 1.26691 1.23821 0.90592 0.95746 0.94240 0.92940 0.98594 0.97656 0.94016 0.91283 0.83980 0.84157 0.74550 0.88321 0.87611 0.86865 0.91010 0.91697 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.04 1.98 4.86 29.85 0.15 2.12 16 10 C -0.08 -3.19 4.78 30.59 0.15 -3.04 16 11 C 0.09 2.70 3.15 44.17 0.14 2.84 16 12 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 13 N -0.82 -26.85 8.44 -171.81 -1.45 -28.30 16 14 C 0.49 14.07 7.07 87.66 0.62 14.69 16 15 O -0.58 -20.23 15.90 -3.04 -0.05 -20.27 16 16 N -0.71 -14.99 5.08 -437.72 -2.22 -17.21 16 17 C 0.11 2.18 3.48 46.01 0.16 2.34 16 18 H 0.09 2.04 7.55 -2.38 -0.02 2.02 16 19 C -0.15 -1.93 6.85 31.61 0.22 -1.71 16 20 C 0.04 0.52 7.63 72.49 0.55 1.08 16 21 O -0.39 -8.75 11.65 -148.98 -1.74 -10.49 16 22 C 0.03 0.77 7.35 72.48 0.53 1.30 16 23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 24 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.00 0.28 7.75 -2.39 -0.02 0.27 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.35 9.67 9.06 -89.70 -0.81 8.85 16 29 H 0.34 11.67 8.58 -89.69 -0.77 10.90 16 30 H 0.42 6.84 8.38 -92.70 -0.78 6.06 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 0.96 7.70 -2.39 -0.02 0.94 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16 36 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -69.72 303.23 -1.20 -70.92 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -1.26 Total: 25.23 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 3.21 Total: -10.03 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.39 Total: -101.42 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.78 Total: -30.77 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.72 -1.20 -70.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709409975.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.221 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds