Wall clock time and date at job start Sun Mar 29 2020 22:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53002 * 109.47415 * 120.00352 * 2 1 3 5 5 C 1.53000 * 109.47233 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47060 * 299.99657 * 5 4 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 4 8 8 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 9 9 H 1.09002 * 109.47153 * 299.99992 * 8 2 1 10 10 O 1.42906 * 109.47321 * 59.99789 * 8 2 1 11 11 C 1.42893 * 114.00470 * 210.00190 * 10 8 2 12 12 C 1.50698 * 109.47649 * 180.02562 * 11 10 8 13 13 O 1.21215 * 119.99144 * 359.97438 * 12 11 10 14 14 O 1.34303 * 120.00282 * 179.97438 * 12 11 10 15 15 C 1.34918 * 116.99949 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00447 * 0.02562 * 15 14 12 17 17 C 1.38752 * 120.00070 * 180.02562 * 15 14 12 18 18 N 1.31444 * 119.99921 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00079 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47176 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47125 * 120.00222 * 19 17 15 22 22 H 1.48500 * 109.47020 * 240.00013 * 19 17 15 23 23 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 24 24 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 25 25 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47063 * 59.99950 * 4 2 1 27 27 H 1.09004 * 109.46733 * 299.99664 * 4 2 1 28 28 H 1.09002 * 109.47398 * 59.99826 * 5 4 2 29 29 H 1.09001 * 109.47194 * 180.02562 * 5 4 2 30 30 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47153 * 300.00319 * 6 5 4 32 32 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 34 34 H 1.09006 * 109.47065 * 300.00260 * 11 10 8 35 35 H 1.09001 * 109.46965 * 59.99469 * 11 10 8 36 36 H 0.97003 * 119.99572 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0805 -1.4416 0.0002 7 6 3.5705 -0.7204 -1.2490 8 6 2.0400 -0.7212 -1.2492 9 1 1.6767 -1.7489 -1.2493 10 8 1.5636 -0.0475 -2.4161 11 6 1.3699 -0.9040 -3.5434 12 6 0.8697 -0.0927 -4.7107 13 8 0.6959 1.1007 -4.5890 14 8 0.6166 -0.6919 -5.8857 15 6 0.1707 0.0917 -6.8893 16 1 0.0330 1.1506 -6.7274 17 6 -0.1110 -0.4627 -8.1297 18 7 0.0561 -1.7515 -8.3267 19 14 -0.7276 0.6224 -9.5196 20 1 -0.8290 2.0257 -9.0443 21 1 0.2217 0.5538 -10.6596 22 1 -2.0649 0.1505 -9.9600 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6768 -1.7489 1.2491 27 1 1.6767 -0.2075 2.1392 28 1 3.9330 0.3071 1.2497 29 1 3.9334 -1.2350 2.1392 30 1 5.1705 -1.4417 0.0005 31 1 3.7175 -2.4694 0.0000 32 1 3.9338 -1.2342 -2.1390 33 1 3.9335 0.3074 -1.2488 34 1 2.3162 -1.3758 -3.8082 35 1 0.6381 -1.6724 -3.2943 36 1 -0.1412 -2.1391 -9.1938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733569292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:57 Heat of formation + Delta-G solvation = -172.684247 kcal Electronic energy + Delta-G solvation = -17670.278952 eV Core-core repulsion = 14732.132219 eV Total energy + Delta-G solvation = -2938.146733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15971 -40.29768 -37.80016 -36.87023 -34.34517 -33.50716 -31.18975 -29.48791 -27.28147 -26.82652 -23.38222 -22.32472 -22.12708 -20.79885 -19.92683 -18.64920 -17.62070 -17.25810 -16.92098 -16.21995 -15.90843 -15.75009 -15.18318 -15.16131 -14.54917 -14.08275 -14.07875 -13.70374 -13.42416 -13.18613 -13.08840 -12.78300 -12.51893 -12.37184 -12.20192 -12.04648 -11.98454 -11.77130 -11.50756 -11.33115 -11.20357 -10.98944 -10.72652 -10.40383 -8.57539 -6.38126 1.26104 1.32651 1.51140 1.58525 1.86585 2.32727 2.93239 3.19295 3.72453 3.76915 3.98736 4.06631 4.17557 4.24771 4.27994 4.29971 4.49619 4.53399 4.57117 4.62576 4.77159 4.91728 4.97891 5.06724 5.11416 5.15399 5.18967 5.29382 5.31283 5.37819 5.42985 5.55164 5.79403 6.17968 6.61382 6.87527 7.69790 8.63369 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.051218 B = 0.004474 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.554971 B = 6256.919989 C = 6489.171878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.062 0.938 4 C -0.105 4.105 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.144 4.144 8 C 0.085 3.915 9 H 0.076 0.924 10 O -0.384 6.384 11 C 0.096 3.904 12 C 0.393 3.607 13 O -0.573 6.573 14 O -0.240 6.240 15 C -0.424 4.424 16 H 0.079 0.921 17 C -0.001 4.001 18 N -0.901 5.901 19 Si 1.019 2.981 20 H -0.267 1.267 21 H -0.257 1.257 22 H -0.257 1.257 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -2.660 17.390 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.081 0.919 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.182 4.182 8 C 0.028 3.972 9 H 0.094 0.906 10 O -0.304 6.304 11 C 0.019 3.981 12 C 0.241 3.759 13 O -0.470 6.470 14 O -0.149 6.149 15 C -0.500 4.500 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.538 5.538 19 Si 0.838 3.162 20 H -0.191 1.191 21 H -0.182 1.182 22 H -0.181 1.181 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.394 -2.331 17.257 18.230 hybrid contribution -0.238 0.407 -0.902 1.018 sum 5.156 -1.924 16.355 17.256 Atomic orbital electron populations 1.21764 0.94990 1.02078 1.01413 1.21217 0.96032 0.99828 0.93404 0.91928 1.21568 0.95835 1.00989 0.95846 1.21590 0.95197 1.00929 0.98121 1.21490 1.00989 0.99454 0.92973 1.22083 0.94929 1.01505 0.99664 1.22534 0.94002 0.96515 0.84163 0.90565 1.87983 1.87036 1.35402 1.19972 1.21504 1.02439 0.90835 0.83337 1.24080 0.78603 0.87654 0.85600 1.90536 1.53443 1.18516 1.84513 1.83858 1.70722 1.41441 1.18841 1.21466 1.46765 0.92458 0.89311 0.90287 1.26549 0.95725 0.98211 0.99675 1.70072 1.45714 1.12396 1.25594 0.84555 0.78764 0.77149 0.75753 1.19104 1.18162 1.18131 0.91203 0.94854 0.92008 0.90796 0.90179 0.92303 0.89906 0.90720 0.90897 0.92040 0.92401 0.88090 0.87856 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.05 71.98 0.65 -2.81 16 2 C -0.09 -1.98 2.46 -10.79 -0.03 -2.00 16 3 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.10 -1.65 5.20 30.60 0.16 -1.49 16 5 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 6 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 7 C -0.14 -3.32 5.54 30.61 0.17 -3.15 16 8 C 0.08 2.22 2.05 30.61 0.06 2.28 16 9 H 0.08 1.75 7.79 -2.39 -0.02 1.73 16 10 O -0.38 -14.33 8.85 -129.93 -1.15 -15.48 16 11 C 0.10 3.70 6.34 71.24 0.45 4.15 16 12 C 0.39 21.07 7.98 71.24 0.57 21.63 16 13 O -0.57 -34.45 15.74 27.20 0.43 -34.02 16 14 O -0.24 -14.54 9.75 14.97 0.15 -14.39 16 15 C -0.42 -26.55 9.64 67.94 0.66 -25.89 16 16 H 0.08 5.07 6.86 -2.91 -0.02 5.05 16 17 C 0.00 -0.07 5.49 84.87 0.47 0.40 16 18 N -0.90 -53.43 13.67 21.62 0.30 -53.14 16 19 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.03 1.02 7.68 -2.39 -0.02 1.00 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.45 7.87 -2.39 -0.02 1.43 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 3.39 7.87 -2.38 -0.02 3.37 16 35 H 0.10 3.43 8.08 -2.39 -0.02 3.41 16 36 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -75.49 300.35 6.31 -69.18 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.04 Total: 11.85 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 3.52 Total: -10.06 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.30 Total: -53.14 kcal Atomic # 8 Polarization: -63.32 SS G_CDS: -0.58 Total: -63.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -75.49 6.31 -69.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733569292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.501 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds