Wall clock time and date at job start Sun Mar 29 2020 22:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00265 * 2 1 4 4 C 1.50704 * 110.01694 * 60.87119 * 3 2 1 5 5 O 1.20829 * 119.99918 * 213.30273 * 4 3 2 6 6 O 1.34226 * 119.99898 * 33.30933 * 4 3 2 7 7 C 1.45194 * 116.99913 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47092 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47207 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99809 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99962 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99934 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99689 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47194 * 89.99722 * 13 11 9 15 15 H 1.48503 * 109.46616 * 209.99744 * 13 11 9 16 16 H 1.48504 * 109.47150 * 329.99442 * 13 11 9 17 17 C 1.54271 * 110.07427 * 182.29058 * 3 2 1 18 18 C 1.54891 * 104.19659 * 95.69737 * 17 3 2 19 19 C 1.54893 * 102.74851 * 37.94199 * 18 17 3 20 20 C 1.53874 * 110.03087 * 299.48141 * 3 2 1 21 21 H 1.09007 * 109.46646 * 66.16493 * 1 2 3 22 22 H 1.08994 * 109.47049 * 186.16437 * 1 2 3 23 23 H 1.09002 * 109.46832 * 306.17077 * 1 2 3 24 24 H 1.08995 * 109.47347 * 299.99339 * 7 6 4 25 25 H 1.09001 * 109.47283 * 59.99662 * 7 6 4 26 26 H 1.08997 * 109.47573 * 299.99836 * 8 7 6 27 27 H 1.09001 * 109.46937 * 59.99934 * 8 7 6 28 28 H 0.96999 * 119.99221 * 179.97438 * 12 11 9 29 29 H 1.08998 * 110.48378 * 214.36969 * 17 3 2 30 30 H 1.08990 * 110.48561 * 337.01896 * 17 3 2 31 31 H 1.09003 * 110.75262 * 279.63084 * 18 17 3 32 32 H 1.09000 * 110.75776 * 156.25584 * 18 17 3 33 33 H 1.08995 * 110.48665 * 203.38292 * 19 18 17 34 34 H 1.08999 * 110.48941 * 80.73521 * 19 18 17 35 35 H 1.09000 * 110.03523 * 359.94900 * 20 3 2 36 36 H 1.09003 * 110.03422 * 121.38482 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5904 2.0570 1.2369 5 8 1.4311 3.2539 1.1916 6 8 1.3937 1.3969 2.3890 7 6 0.9899 2.1850 3.5396 8 6 0.8146 1.2666 4.7507 9 6 0.3960 2.0847 5.9451 10 1 0.2683 3.1529 5.8500 11 6 0.1772 1.4696 7.1595 12 7 0.3332 0.1688 7.2754 13 14 -0.3423 2.4836 8.6399 14 1 -1.8244 2.5596 8.6923 15 1 0.1647 1.8439 9.8805 16 1 0.2199 3.8531 8.5237 17 6 3.5483 1.2002 -0.0579 18 6 3.8827 1.3473 -1.5631 19 6 2.8633 2.4127 -2.0372 20 6 1.5747 2.0763 -1.2585 21 1 -0.3633 0.4153 -0.9401 22 1 -0.3633 -1.0217 0.1103 23 1 -0.3633 0.6065 0.8296 24 1 1.7551 2.9303 3.7562 25 1 0.0459 2.6856 3.3239 26 1 0.0491 0.5215 4.5339 27 1 1.7583 0.7657 4.9664 28 1 0.1796 -0.2637 8.1299 29 1 4.0076 2.0055 0.5153 30 1 3.8785 0.2301 0.3132 31 1 3.7276 0.4042 -2.0872 32 1 4.9042 1.7026 -1.6990 33 1 2.6936 2.3273 -3.1105 34 1 3.2119 3.4138 -1.7836 35 1 0.9207 1.4544 -1.8697 36 1 1.0597 2.9941 -0.9746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753496108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:20 Heat of formation + Delta-G solvation = -150.487947 kcal Electronic energy + Delta-G solvation = -17946.733127 eV Core-core repulsion = 15009.548897 eV Total energy + Delta-G solvation = -2937.184229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75372 -38.46222 -36.36621 -35.56439 -33.33875 -30.39883 -29.26405 -28.68703 -26.33766 -25.11763 -22.71238 -21.00862 -20.84700 -19.50996 -18.14282 -16.65466 -16.45712 -15.93878 -15.72612 -15.22039 -14.76787 -14.56007 -14.26659 -13.49024 -13.26556 -13.04713 -12.38777 -12.36021 -11.87033 -11.56893 -11.40411 -11.30906 -11.24142 -11.14984 -10.98498 -10.78248 -10.68692 -10.66543 -10.36528 -9.84257 -9.65959 -9.44851 -9.24944 -8.44748 -6.10494 -4.15154 2.40578 3.02232 3.28053 3.34177 3.38363 3.65688 4.29386 4.38093 4.39931 4.81252 5.12085 5.15303 5.19811 5.25884 5.28004 5.36025 5.49761 5.52642 5.68947 5.71359 5.77976 5.86107 5.89107 6.00656 6.05715 6.07191 6.14985 6.62029 6.93346 7.00448 7.55295 7.62162 7.85933 8.15006 8.24579 8.90306 9.49233 11.00937 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045074 B = 0.004766 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.051863 B = 5873.898436 C = 6034.516781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.356 6.356 3 C 0.125 3.875 4 C 0.436 3.564 5 O -0.512 6.512 6 O -0.343 6.343 7 C 0.071 3.929 8 C 0.026 3.974 9 C -0.527 4.527 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.107 4.107 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.147 4.147 21 H 0.043 0.957 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 0.814 -17.981 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.274 6.274 3 C 0.084 3.916 4 C 0.278 3.722 5 O -0.402 6.402 6 O -0.259 6.259 7 C -0.002 4.002 8 C -0.011 4.011 9 C -0.565 4.565 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.527 5.527 13 Si 0.727 3.273 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.184 4.184 21 H 0.062 0.938 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.980 0.846 -17.798 18.257 hybrid contribution -0.655 0.860 1.055 1.510 sum 3.325 1.705 -16.743 17.155 Atomic orbital electron populations 1.22901 0.80607 1.03666 1.00189 1.88018 1.20208 1.24794 1.94418 1.22181 0.96285 0.83555 0.89587 1.24357 0.74178 0.87266 0.86420 1.90613 1.47561 1.16161 1.85832 1.86639 1.77218 1.43135 1.18861 1.23684 0.98598 0.95168 0.82738 1.19158 0.98598 0.94854 0.88536 1.20980 1.47468 0.94180 0.93914 0.92314 1.24982 0.95179 0.95011 0.98928 1.69979 1.48579 1.08756 1.25434 0.86474 0.78852 0.80221 0.81782 1.20479 1.21012 1.19732 1.22370 0.89713 1.04238 0.98144 1.22516 0.99225 0.99502 0.94576 1.22313 0.94379 0.99470 0.99557 1.22810 0.99511 1.01369 0.94739 0.93816 0.88761 0.93313 0.92336 0.92458 0.95369 0.95291 0.92697 0.89763 0.88858 0.90651 0.90763 0.91061 0.91021 0.89887 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.31 101.05 1.04 1.33 16 2 O -0.36 -5.31 10.12 -48.98 -0.50 -5.80 16 3 C 0.13 1.82 0.99 -90.65 -0.09 1.73 16 4 C 0.44 8.05 5.48 36.01 0.20 8.25 16 5 O -0.51 -10.31 15.32 -18.75 -0.29 -10.60 16 6 O -0.34 -7.24 9.37 -44.38 -0.42 -7.66 16 7 C 0.07 1.62 5.40 37.16 0.20 1.82 16 8 C 0.03 0.69 5.35 -27.88 -0.15 0.54 16 9 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 10 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 13 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.11 -1.32 6.09 -25.07 -0.15 -1.47 16 18 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 19 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 20 C -0.15 -1.75 5.60 -25.61 -0.14 -1.90 16 21 H 0.04 0.46 6.60 -51.93 -0.34 0.12 16 22 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.73 6.62 -51.93 -0.34 0.39 16 24 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 25 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 30 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.87 6.45 -51.93 -0.34 0.53 16 36 H 0.09 1.18 6.72 -51.93 -0.35 0.84 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -31.48 298.10 -6.38 -37.87 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.54 Total: -3.01 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 0.15 Total: -5.98 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.20 Total: -24.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.48 -6.38 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753496108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.622 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds