Wall clock time and date at job start Sun Mar 29 2020 22:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00265 * 2 1 4 4 C 1.50704 * 110.01694 * 60.87119 * 3 2 1 5 5 O 1.20829 * 119.99918 * 213.30273 * 4 3 2 6 6 O 1.34226 * 119.99898 * 33.30933 * 4 3 2 7 7 C 1.45194 * 116.99913 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47092 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47207 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99809 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99962 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99934 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99689 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47194 * 89.99722 * 13 11 9 15 15 H 1.48503 * 109.46616 * 209.99744 * 13 11 9 16 16 H 1.48504 * 109.47150 * 329.99442 * 13 11 9 17 17 C 1.54271 * 110.07427 * 182.29058 * 3 2 1 18 18 C 1.54891 * 104.19659 * 95.69737 * 17 3 2 19 19 C 1.54893 * 102.74851 * 37.94199 * 18 17 3 20 20 C 1.53874 * 110.03087 * 299.48141 * 3 2 1 21 21 H 1.09007 * 109.46646 * 66.16493 * 1 2 3 22 22 H 1.08994 * 109.47049 * 186.16437 * 1 2 3 23 23 H 1.09002 * 109.46832 * 306.17077 * 1 2 3 24 24 H 1.08995 * 109.47347 * 299.99339 * 7 6 4 25 25 H 1.09001 * 109.47283 * 59.99662 * 7 6 4 26 26 H 1.08997 * 109.47573 * 299.99836 * 8 7 6 27 27 H 1.09001 * 109.46937 * 59.99934 * 8 7 6 28 28 H 0.96999 * 119.99221 * 179.97438 * 12 11 9 29 29 H 1.08998 * 110.48378 * 214.36969 * 17 3 2 30 30 H 1.08990 * 110.48561 * 337.01896 * 17 3 2 31 31 H 1.09003 * 110.75262 * 279.63084 * 18 17 3 32 32 H 1.09000 * 110.75776 * 156.25584 * 18 17 3 33 33 H 1.08995 * 110.48665 * 203.38292 * 19 18 17 34 34 H 1.08999 * 110.48941 * 80.73521 * 19 18 17 35 35 H 1.09000 * 110.03523 * 359.94900 * 20 3 2 36 36 H 1.09003 * 110.03422 * 121.38482 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5904 2.0570 1.2369 5 8 1.4311 3.2539 1.1916 6 8 1.3937 1.3969 2.3890 7 6 0.9899 2.1850 3.5396 8 6 0.8146 1.2666 4.7507 9 6 0.3960 2.0847 5.9451 10 1 0.2683 3.1529 5.8500 11 6 0.1772 1.4696 7.1595 12 7 0.3332 0.1688 7.2754 13 14 -0.3423 2.4836 8.6399 14 1 -1.8244 2.5596 8.6923 15 1 0.1647 1.8439 9.8805 16 1 0.2199 3.8531 8.5237 17 6 3.5483 1.2002 -0.0579 18 6 3.8827 1.3473 -1.5631 19 6 2.8633 2.4127 -2.0372 20 6 1.5747 2.0763 -1.2585 21 1 -0.3633 0.4153 -0.9401 22 1 -0.3633 -1.0217 0.1103 23 1 -0.3633 0.6065 0.8296 24 1 1.7551 2.9303 3.7562 25 1 0.0459 2.6856 3.3239 26 1 0.0491 0.5215 4.5339 27 1 1.7583 0.7657 4.9664 28 1 0.1796 -0.2637 8.1299 29 1 4.0076 2.0055 0.5153 30 1 3.8785 0.2301 0.3132 31 1 3.7276 0.4042 -2.0872 32 1 4.9042 1.7026 -1.6990 33 1 2.6936 2.3273 -3.1105 34 1 3.2119 3.4138 -1.7836 35 1 0.9207 1.4544 -1.8697 36 1 1.0597 2.9941 -0.9746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753496108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:19 Heat of formation + Delta-G solvation = -169.228776 kcal Electronic energy + Delta-G solvation = -17947.545790 eV Core-core repulsion = 15009.548897 eV Total energy + Delta-G solvation = -2937.996893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.13552 -39.76203 -37.89240 -36.66936 -35.48002 -32.43184 -30.28071 -29.70487 -27.51740 -27.00257 -24.20823 -22.79992 -21.82706 -20.77340 -19.55037 -18.50401 -17.93017 -17.67483 -17.00966 -16.57640 -16.26343 -15.71435 -15.48583 -15.09883 -14.68281 -14.41543 -14.17786 -13.54541 -13.23387 -13.10829 -12.86504 -12.70910 -12.63697 -12.49336 -12.35903 -12.06864 -12.05566 -11.82764 -11.61283 -11.55379 -11.46976 -11.43372 -10.72165 -10.64569 -8.29628 -6.43875 0.92163 1.38693 1.41485 1.51298 1.59085 2.37337 2.56485 3.04500 3.28338 3.43278 3.59524 4.09801 4.12442 4.16048 4.24209 4.29439 4.31385 4.39872 4.47964 4.61464 4.69879 4.76849 4.79292 4.95961 4.97278 5.13394 5.14858 5.20389 5.40037 5.40569 5.44956 5.68341 5.88837 6.02456 6.58730 6.69519 7.26232 8.83066 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045074 B = 0.004766 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.051863 B = 5873.898436 C = 6034.516781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.366 6.366 3 C 0.124 3.876 4 C 0.432 3.568 5 O -0.531 6.531 6 O -0.356 6.356 7 C 0.086 3.914 8 C 0.033 3.967 9 C -0.553 4.553 10 H 0.065 0.935 11 C 0.007 3.993 12 N -0.926 5.926 13 Si 0.975 3.025 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.263 1.263 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.144 4.144 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.269 0.731 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 1.424 -19.206 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.285 6.285 3 C 0.082 3.918 4 C 0.276 3.724 5 O -0.421 6.421 6 O -0.272 6.272 7 C 0.013 3.987 8 C -0.004 4.004 9 C -0.590 4.590 10 H 0.083 0.917 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.799 3.201 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.187 1.187 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.182 4.182 21 H 0.090 0.910 22 H 0.128 0.872 23 H 0.039 0.961 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.182 1.459 -19.050 19.558 hybrid contribution -0.719 0.626 1.383 1.680 sum 3.463 2.084 -17.666 18.123 Atomic orbital electron populations 1.23060 0.79820 1.04466 1.00515 1.88007 1.21165 1.25003 1.94302 1.22543 0.97671 0.83385 0.88171 1.25405 0.73076 0.87493 0.86454 1.90591 1.48366 1.17140 1.86009 1.86641 1.77731 1.43393 1.19408 1.23213 0.98743 0.94123 0.82635 1.18959 0.96441 0.94764 0.90243 1.21355 1.48061 0.94694 0.94906 0.91727 1.25983 0.94745 0.96221 1.02241 1.70103 1.49184 1.10629 1.26589 0.85296 0.78772 0.78643 0.77424 1.19427 1.20245 1.18734 1.22502 0.87973 1.03906 1.00736 1.22520 1.00302 1.00115 0.91821 1.22349 0.92878 0.99355 1.00738 1.22852 1.01092 1.00444 0.93768 0.91007 0.87157 0.96070 0.92276 0.92303 0.97628 0.97686 0.92254 0.90495 0.89013 0.89491 0.88696 0.88363 0.91280 0.88043 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.31 113.37 1.17 1.60 16 2 O -0.37 -10.60 10.12 -135.83 -1.37 -11.98 16 3 C 0.12 3.50 0.99 -10.81 -0.01 3.49 16 4 C 0.43 16.19 5.48 71.24 0.39 16.58 16 5 O -0.53 -21.63 15.32 21.96 0.34 -21.29 16 6 O -0.36 -15.50 9.37 -46.47 -0.44 -15.93 16 7 C 0.09 4.07 5.40 71.98 0.39 4.46 16 8 C 0.03 1.84 5.35 29.85 0.16 2.00 16 9 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 10 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 11 C 0.01 0.42 5.46 84.66 0.46 0.88 16 12 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 13 Si 0.98 43.97 29.54 68.60 2.03 46.00 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 17 C -0.11 -2.67 6.09 31.67 0.19 -2.48 16 18 C -0.11 -1.74 6.91 31.89 0.22 -1.52 16 19 C -0.12 -1.88 6.83 31.67 0.22 -1.66 16 20 C -0.14 -3.17 5.60 31.32 0.18 -3.00 16 21 H 0.07 1.38 6.60 -2.38 -0.02 1.37 16 22 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.02 0.64 6.62 -2.39 -0.02 0.62 16 24 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 25 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 26 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 27 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.08 1.89 7.85 -2.39 -0.02 1.88 16 30 H 0.09 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.83 6.45 -2.39 -0.02 1.82 16 36 H 0.07 1.85 6.72 -2.39 -0.02 1.84 16 Total: -1.00 -68.47 298.10 5.49 -62.98 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.05 Total: 7.47 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 3.60 Total: -11.38 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.86 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -1.47 Total: -49.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -68.47 5.49 -62.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753496108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.250 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds