Wall clock time and date at job start Sun Mar 29 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99836 * 2 1 4 4 H 1.48499 * 109.46635 * 269.99661 * 3 2 1 5 5 H 1.48495 * 109.47243 * 29.99745 * 3 2 1 6 6 H 1.48504 * 109.47024 * 150.00047 * 3 2 1 7 7 C 1.37874 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00160 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00040 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47204 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.46702 * 179.97438 * 10 9 7 12 12 C 1.34778 * 119.99286 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00463 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99809 * 179.97438 * 12 11 10 15 15 O 1.41598 * 120.00229 * 179.97438 * 14 12 11 16 16 C 1.42898 * 114.00166 * 179.97438 * 15 14 12 17 17 C 1.54894 * 110.48190 * 88.24517 * 16 15 14 18 18 C 1.55238 * 102.58338 * 156.67678 * 17 16 15 19 19 C 1.54266 * 104.23333 * 322.08174 * 18 17 16 20 20 C 1.53869 * 106.59800 * 23.61579 * 19 18 17 21 21 H 0.96998 * 120.00116 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47230 * 60.00155 * 9 7 2 23 23 H 1.09002 * 109.47102 * 299.99973 * 9 7 2 24 24 H 1.08995 * 109.47135 * 59.99809 * 10 9 7 25 25 H 1.09002 * 109.46835 * 299.99849 * 10 9 7 26 26 H 0.96993 * 120.00415 * 359.97438 * 11 10 9 27 27 H 0.96998 * 119.99702 * 0.02562 * 14 12 11 28 28 H 1.09002 * 110.43427 * 325.70402 * 16 15 14 29 29 H 1.08996 * 110.75388 * 275.06031 * 17 16 15 30 30 H 1.08993 * 110.76071 * 38.44257 * 17 16 15 31 31 H 1.09005 * 110.46917 * 203.39204 * 18 17 16 32 32 H 1.09007 * 110.58541 * 80.83124 * 18 17 16 33 33 H 1.08999 * 110.03060 * 264.32313 * 19 18 17 34 34 H 1.09006 * 110.06829 * 142.91691 * 19 18 17 35 35 H 1.09001 * 110.02983 * 240.71432 * 20 19 18 36 36 H 1.08996 * 110.07773 * 119.30576 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4866 -2.6365 0.0009 12 6 6.1604 -3.8037 0.0014 13 8 5.5525 -4.8567 0.0022 14 7 7.5082 -3.8038 0.0008 15 8 8.2162 -5.0300 0.0018 16 6 9.6374 -4.8807 0.0004 17 6 10.1729 -4.7780 1.4502 18 6 11.6499 -5.2310 1.2980 19 6 11.5923 -6.3691 0.2581 20 6 10.3128 -6.1463 -0.5669 21 1 -0.4850 0.8400 0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8752 -0.6804 -0.8889 24 1 3.6586 -3.1502 -0.8892 25 1 3.6579 -3.1506 0.8908 26 1 5.9715 -1.7965 0.0006 27 1 7.9931 -2.9637 0.0005 28 1 9.9272 -4.0024 -0.5765 29 1 10.1165 -3.7510 1.8110 30 1 9.6284 -5.4515 2.1118 31 1 12.0348 -5.6016 2.2482 32 1 12.2667 -4.4103 0.9317 33 1 11.5480 -7.3341 0.7629 34 1 12.4671 -6.3273 -0.3909 35 1 9.6473 -7.0032 -0.4626 36 1 10.5657 -5.9959 -1.6164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784417296.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:15 Heat of formation + Delta-G solvation = -40.620858 kcal Electronic energy + Delta-G solvation = -16917.789841 eV Core-core repulsion = 14017.662557 eV Total energy + Delta-G solvation = -2900.127284 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62418 -38.72464 -36.10723 -34.81841 -32.92084 -31.84442 -29.72185 -29.10683 -27.68050 -24.71815 -21.32768 -21.15306 -20.80158 -20.54453 -18.42254 -17.89554 -16.83824 -15.98266 -15.58504 -15.39182 -14.67782 -14.27368 -14.12124 -13.77406 -13.71239 -13.36961 -12.81757 -12.59868 -12.53208 -11.64195 -11.52830 -11.48088 -11.26853 -11.18518 -10.92686 -10.75748 -10.37997 -10.25823 -9.97926 -9.78601 -9.31950 -8.90439 -8.61973 -8.40989 -6.10034 -4.10183 1.75256 3.25635 3.33014 3.34336 3.52349 4.02596 4.12959 4.20635 4.38245 4.42754 4.59866 4.85550 5.04006 5.06109 5.19199 5.22715 5.22804 5.46199 5.51829 5.65889 5.79379 5.79644 5.92316 6.02604 6.24964 6.57949 6.72871 6.84569 7.02648 7.23931 7.26001 7.67648 8.22235 8.46218 8.91411 8.95237 9.49797 11.03043 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.055813 B = 0.003560 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.551633 B = 7864.044792 C = 8190.086273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.151 3.849 11 N -0.733 5.733 12 C 0.715 3.285 13 O -0.576 6.576 14 N -0.621 5.621 15 O -0.121 6.121 16 C 0.054 3.946 17 C -0.148 4.148 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.115 4.115 21 H 0.265 0.735 22 H 0.023 0.977 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.392 0.608 27 H 0.400 0.600 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.374 -6.085 0.674 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.029 3.971 11 N -0.392 5.392 12 C 0.415 3.585 13 O -0.451 6.451 14 N -0.327 5.327 15 O -0.124 6.124 16 C -0.005 4.005 17 C -0.186 4.186 18 C -0.162 4.162 19 C -0.159 4.159 20 C -0.154 4.154 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.036 0.964 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.239 0.761 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.522 -7.184 0.674 25.561 hybrid contribution 1.115 1.838 -0.009 2.150 sum 25.637 -5.345 0.665 26.197 Atomic orbital electron populations 1.69903 1.06291 1.27044 1.50433 1.24998 0.94763 0.99132 0.94406 0.86743 0.80245 0.83554 0.78461 1.20250 1.21307 1.19092 1.20914 0.88571 0.94970 1.51610 0.90501 1.19810 0.97953 0.91281 0.96892 1.21459 0.73788 1.00036 1.01845 1.45379 1.08730 1.05495 1.79547 1.15520 0.79160 0.85328 0.78459 1.90931 1.66850 1.30342 1.57003 1.46321 1.03087 0.99382 1.83910 1.90600 1.16453 1.08356 1.96947 1.23562 0.80553 0.99824 0.96588 1.23117 0.96244 1.02244 0.97007 1.22341 0.96134 0.98268 0.99408 1.22090 0.97030 0.99280 0.97512 1.22109 0.96443 0.97192 0.99683 0.92546 0.95925 0.96365 0.91879 0.91850 0.77493 0.76128 0.90158 0.91142 0.90065 0.91162 0.91396 0.91220 0.91333 0.90012 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.11 5.61 -4.04 -0.02 3.08 16 11 N -0.73 -12.26 5.56 -65.22 -0.36 -12.62 16 12 C 0.71 12.88 8.71 -86.92 -0.76 12.12 16 13 O -0.58 -13.25 16.75 -12.86 -0.22 -13.46 16 14 N -0.62 -8.48 6.38 27.63 0.18 -8.31 16 15 O -0.12 -1.71 10.82 -29.62 -0.32 -2.03 16 16 C 0.05 0.50 3.49 -25.07 -0.09 0.41 16 17 C -0.15 -1.21 6.65 -24.55 -0.16 -1.37 16 18 C -0.12 -0.77 6.84 -24.88 -0.17 -0.94 16 19 C -0.12 -0.76 6.80 -25.62 -0.17 -0.93 16 20 C -0.12 -0.93 6.56 -25.62 -0.17 -1.09 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 23 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.39 5.18 8.49 -40.82 -0.35 4.83 16 27 H 0.40 3.79 8.45 -40.82 -0.35 3.45 16 28 H 0.08 0.61 7.97 -51.93 -0.41 0.20 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -34.36 302.96 -7.82 -42.19 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.68 Total: 2.39 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.09 Total: -2.37 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.59 Total: -47.47 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.54 Total: -15.49 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.36 -7.82 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784417296.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.565 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds