Wall clock time and date at job start Sun Mar 29 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00318 * 2 1 4 4 H 1.48494 * 109.47199 * 270.00534 * 3 2 1 5 5 H 1.48499 * 109.46872 * 30.00554 * 3 2 1 6 6 H 1.48499 * 109.46961 * 150.00252 * 3 2 1 7 7 C 1.37880 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99871 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00149 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47422 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00260 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00002 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99883 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99688 * 180.02562 * 13 11 10 15 15 H 1.08990 * 109.47427 * 35.00063 * 14 13 11 16 16 C 1.53000 * 109.46901 * 155.00173 * 14 13 11 17 17 C 1.52997 * 109.47060 * 294.99627 * 16 14 13 18 18 O 1.42895 * 109.47503 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47102 * 274.99602 * 14 13 11 20 20 C 1.53001 * 117.49742 * 128.74734 * 19 14 13 21 21 C 1.53001 * 117.49801 * 60.08746 * 19 14 13 22 22 H 0.97009 * 119.99754 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46558 * 60.00312 * 9 7 2 24 24 H 1.08996 * 109.47584 * 300.00218 * 9 7 2 25 25 H 0.97003 * 119.99398 * 0.02562 * 10 9 7 26 26 H 0.96993 * 120.00319 * 0.02562 * 13 11 10 27 27 H 1.09002 * 109.47398 * 54.99796 * 16 14 13 28 28 H 1.09001 * 109.47194 * 174.99977 * 16 14 13 29 29 H 1.09002 * 109.47153 * 300.00319 * 17 16 14 30 30 H 1.08998 * 109.47533 * 59.99948 * 17 16 14 31 31 H 0.96698 * 114.00355 * 180.02562 * 18 17 16 32 32 H 1.09001 * 115.55234 * 274.42015 * 19 14 13 33 33 H 1.08996 * 117.50206 * 0.02562 * 20 19 14 34 34 H 1.09006 * 117.49807 * 145.02460 * 20 19 14 35 35 H 1.08996 * 117.50505 * 214.98026 * 21 19 14 36 36 H 1.09003 * 117.49537 * 359.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0009 12 8 6.1149 -1.8976 -0.0005 13 7 5.7740 -4.0924 -0.0013 14 6 7.2143 -4.3601 -0.0007 15 1 7.7251 -3.5993 0.5893 16 6 7.4765 -5.7390 0.6083 17 6 7.0655 -5.7321 2.0820 18 8 7.3108 -7.0197 2.6511 19 6 7.7395 -4.3291 -1.4375 20 6 8.9573 -3.4488 -1.7256 21 6 7.5724 -3.0266 -2.2227 22 1 -0.4850 0.8401 0.0004 23 1 3.8750 -0.6806 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.3694 -3.3126 -0.0010 26 1 5.1437 -4.8296 -0.0021 27 1 6.8951 -6.4894 0.0725 28 1 8.5374 -5.9759 0.5282 29 1 7.6468 -4.9817 2.6179 30 1 6.0046 -5.4952 2.1623 31 1 7.0726 -7.0885 3.5857 32 1 7.6526 -5.2646 -1.9901 33 1 9.3846 -2.8922 -0.8916 34 1 9.6714 -3.8050 -2.4681 35 1 7.3760 -3.1051 -3.2919 36 1 7.0880 -2.1920 -1.7158 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:38 Heat of formation + Delta-G solvation = -65.086058 kcal Electronic energy + Delta-G solvation = -17596.338536 eV Core-core repulsion = 14695.150361 eV Total energy + Delta-G solvation = -2901.188174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.84835 -37.66517 -36.80075 -34.36865 -34.12386 -32.36835 -31.11891 -27.81079 -25.90031 -22.41714 -22.08642 -21.69985 -20.53806 -20.18054 -18.33163 -17.48543 -16.42014 -16.18542 -15.54875 -15.14562 -14.97091 -14.35839 -14.18951 -13.81253 -13.43915 -13.17758 -12.41816 -12.34175 -12.14077 -11.83743 -11.66330 -11.25270 -11.18966 -10.94732 -10.74539 -10.24258 -10.13920 -10.04589 -9.95951 -9.54520 -9.43924 -8.77618 -8.72293 -8.01465 -6.20559 -4.22382 3.18106 3.28205 3.35331 3.43142 3.76835 3.86631 4.10184 4.34439 4.81681 4.85275 4.88995 4.97253 5.12470 5.15198 5.19972 5.26292 5.39234 5.56234 5.62466 5.76862 5.83587 5.98803 6.12640 6.24209 6.59756 6.75104 6.82750 7.12174 7.25753 7.40845 7.42355 7.59248 8.29112 8.70015 8.82531 9.22213 9.41248 10.91475 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.005518 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.507070 B = 5072.719230 C = 5776.674478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.723 5.723 11 C 0.697 3.303 12 O -0.601 6.601 13 N -0.749 5.749 14 C 0.199 3.801 15 H 0.089 0.911 16 C -0.121 4.121 17 C 0.074 3.926 18 O -0.578 6.578 19 C -0.171 4.171 20 C -0.174 4.174 21 C -0.179 4.179 22 H 0.267 0.733 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.392 0.608 26 H 0.392 0.608 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.380 0.620 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.487 -11.509 1.152 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.375 5.375 11 C 0.397 3.603 12 O -0.481 6.481 13 N -0.405 5.405 14 C 0.093 3.907 15 H 0.107 0.893 16 C -0.159 4.159 17 C -0.004 4.004 18 O -0.384 6.384 19 C -0.191 4.191 20 C -0.212 4.212 21 C -0.215 4.215 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.225 0.775 26 H 0.226 0.774 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.226 0.774 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.214 -10.609 0.557 18.556 hybrid contribution -0.539 0.284 0.427 0.744 sum 14.675 -10.325 0.984 17.970 Atomic orbital electron populations 1.69884 1.06227 1.27395 1.49591 1.24782 0.94773 0.99152 0.93905 0.86812 0.80579 0.83210 0.79053 1.19855 1.20968 1.18461 1.21102 0.88626 0.95163 1.53146 0.90342 1.19341 0.94779 0.77677 0.96578 1.45413 1.03801 1.11018 1.77224 1.16090 0.83459 0.82807 0.77897 1.90784 1.55200 1.43276 1.58870 1.45263 1.07044 1.06590 1.81597 1.20167 0.80858 0.96039 0.93660 0.89333 1.21745 1.03253 0.96701 0.94227 1.22196 0.99740 0.84336 0.94078 1.86429 1.88906 1.33282 1.29738 1.22652 1.03358 0.95804 0.97279 1.22903 0.91146 1.03630 1.03511 1.23346 0.99260 0.99369 0.99560 0.92288 0.95975 0.96383 0.77510 0.77446 0.90679 0.89703 0.93520 0.93103 0.77352 0.88187 0.88860 0.89347 0.89802 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.54 -14.85 9.83 -34.44 -0.34 -15.19 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.82 16 9 C 0.24 5.87 4.50 -5.19 -0.02 5.85 16 10 N -0.72 -14.56 5.55 -66.42 -0.37 -14.93 16 11 C 0.70 13.12 7.90 -86.93 -0.69 12.44 16 12 O -0.60 -13.29 13.37 5.29 0.07 -13.22 16 13 N -0.75 -10.35 4.52 -58.68 -0.26 -10.61 16 14 C 0.20 2.45 2.27 -67.93 -0.15 2.29 16 15 H 0.09 1.26 7.33 -51.93 -0.38 0.88 16 16 C -0.12 -1.21 5.10 -26.73 -0.14 -1.34 16 17 C 0.07 0.74 6.93 37.16 0.26 1.00 16 18 O -0.58 -5.71 13.66 -35.23 -0.48 -6.19 16 19 C -0.17 -2.09 5.36 -90.62 -0.49 -2.58 16 20 C -0.17 -2.08 10.18 -26.69 -0.27 -2.35 16 21 C -0.18 -2.59 9.74 -26.69 -0.26 -2.85 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 24 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 25 H 0.39 6.99 8.34 -40.82 -0.34 6.65 16 26 H 0.39 4.49 8.62 -40.82 -0.35 4.13 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.52 7.75 -51.93 -0.40 0.11 16 31 H 0.38 2.15 9.12 45.56 0.42 2.57 16 32 H 0.10 1.09 8.11 -51.93 -0.42 0.67 16 33 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.13 2.30 5.02 -51.93 -0.26 2.04 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -32.52 300.52 -7.23 -39.75 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.62 Total: 10.29 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.20 Total: -0.64 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.14 Total: -51.30 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.41 Total: -19.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.52 -7.23 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.339 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds