Wall clock time and date at job start Sun Mar 29 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00318 * 2 1 4 4 H 1.48494 * 109.47199 * 270.00534 * 3 2 1 5 5 H 1.48499 * 109.46872 * 30.00554 * 3 2 1 6 6 H 1.48499 * 109.46961 * 150.00252 * 3 2 1 7 7 C 1.37880 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99871 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00149 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47422 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00260 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00002 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99883 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99688 * 180.02562 * 13 11 10 15 15 H 1.08990 * 109.47427 * 35.00063 * 14 13 11 16 16 C 1.53000 * 109.46901 * 155.00173 * 14 13 11 17 17 C 1.52997 * 109.47060 * 294.99627 * 16 14 13 18 18 O 1.42895 * 109.47503 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47102 * 274.99602 * 14 13 11 20 20 C 1.53001 * 117.49742 * 128.74734 * 19 14 13 21 21 C 1.53001 * 117.49801 * 60.08746 * 19 14 13 22 22 H 0.97009 * 119.99754 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46558 * 60.00312 * 9 7 2 24 24 H 1.08996 * 109.47584 * 300.00218 * 9 7 2 25 25 H 0.97003 * 119.99398 * 0.02562 * 10 9 7 26 26 H 0.96993 * 120.00319 * 0.02562 * 13 11 10 27 27 H 1.09002 * 109.47398 * 54.99796 * 16 14 13 28 28 H 1.09001 * 109.47194 * 174.99977 * 16 14 13 29 29 H 1.09002 * 109.47153 * 300.00319 * 17 16 14 30 30 H 1.08998 * 109.47533 * 59.99948 * 17 16 14 31 31 H 0.96698 * 114.00355 * 180.02562 * 18 17 16 32 32 H 1.09001 * 115.55234 * 274.42015 * 19 14 13 33 33 H 1.08996 * 117.50206 * 0.02562 * 20 19 14 34 34 H 1.09006 * 117.49807 * 145.02460 * 20 19 14 35 35 H 1.08996 * 117.50505 * 214.98026 * 21 19 14 36 36 H 1.09003 * 117.49537 * 359.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0009 12 8 6.1149 -1.8976 -0.0005 13 7 5.7740 -4.0924 -0.0013 14 6 7.2143 -4.3601 -0.0007 15 1 7.7251 -3.5993 0.5893 16 6 7.4765 -5.7390 0.6083 17 6 7.0655 -5.7321 2.0820 18 8 7.3108 -7.0197 2.6511 19 6 7.7395 -4.3291 -1.4375 20 6 8.9573 -3.4488 -1.7256 21 6 7.5724 -3.0266 -2.2227 22 1 -0.4850 0.8401 0.0004 23 1 3.8750 -0.6806 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.3694 -3.3126 -0.0010 26 1 5.1437 -4.8296 -0.0021 27 1 6.8951 -6.4894 0.0725 28 1 8.5374 -5.9759 0.5282 29 1 7.6468 -4.9817 2.6179 30 1 6.0046 -5.4952 2.1623 31 1 7.0726 -7.0885 3.5857 32 1 7.6526 -5.2646 -1.9901 33 1 9.3846 -2.8922 -0.8916 34 1 9.6714 -3.8050 -2.4681 35 1 7.3760 -3.1051 -3.2919 36 1 7.0880 -2.1920 -1.7158 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787350780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:38 Heat of formation + Delta-G solvation = -91.386466 kcal Electronic energy + Delta-G solvation = -17597.479007 eV Core-core repulsion = 14695.150361 eV Total energy + Delta-G solvation = -2902.328646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21393 -38.82081 -37.64693 -36.05957 -35.42524 -34.35140 -32.27644 -29.66439 -26.96085 -24.21288 -23.19173 -22.59710 -22.03259 -21.33123 -19.94220 -18.46649 -18.15248 -17.53110 -16.77982 -16.56776 -16.06966 -15.84706 -15.50352 -15.11056 -14.93488 -14.50113 -14.37452 -13.98356 -13.20127 -13.01496 -12.83734 -12.70463 -12.53637 -12.29894 -12.01601 -11.91641 -11.63924 -11.32511 -11.12945 -10.97971 -10.90418 -10.88806 -10.11966 -9.63428 -8.38949 -6.45437 1.33919 1.35857 1.48925 1.85622 2.26510 2.29443 2.92977 2.97031 3.17576 3.57226 3.91046 3.97479 4.06889 4.18341 4.20413 4.37276 4.49469 4.67984 4.73556 4.78324 4.83268 4.99764 5.07290 5.08741 5.14944 5.26742 5.30410 5.39979 5.62651 5.65231 6.01065 6.32006 6.57141 6.86000 7.16366 7.30917 7.74116 8.75904 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.005518 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.507070 B = 5072.719230 C = 5776.674478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.254 3.746 10 N -0.724 5.724 11 C 0.698 3.302 12 O -0.633 6.633 13 N -0.728 5.728 14 C 0.198 3.802 15 H 0.069 0.931 16 C -0.111 4.111 17 C 0.075 3.925 18 O -0.589 6.589 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.206 4.206 22 H 0.272 0.728 23 H 0.010 0.990 24 H 0.008 0.992 25 H 0.403 0.597 26 H 0.407 0.593 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.397 0.603 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.049 -12.673 1.042 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.377 5.377 11 C 0.398 3.602 12 O -0.516 6.516 13 N -0.384 5.384 14 C 0.093 3.907 15 H 0.087 0.913 16 C -0.149 4.149 17 C -0.003 4.003 18 O -0.398 6.398 19 C -0.181 4.181 20 C -0.195 4.195 21 C -0.243 4.243 22 H 0.081 0.919 23 H 0.028 0.972 24 H 0.026 0.974 25 H 0.238 0.762 26 H 0.243 0.757 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.247 0.753 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.784 -11.841 0.463 20.546 hybrid contribution -1.010 0.551 0.485 1.249 sum 15.774 -11.290 0.947 19.421 Atomic orbital electron populations 1.69984 1.07696 1.28577 1.50854 1.25572 0.95505 1.02610 0.93611 0.85858 0.79259 0.79343 0.79420 1.19067 1.19843 1.18450 1.21294 0.90029 0.94514 1.52459 0.92368 1.18900 0.92873 0.79927 0.95373 1.45129 1.04825 1.09752 1.78033 1.16157 0.82503 0.83982 0.77550 1.90776 1.55805 1.44875 1.60116 1.45091 1.08261 1.05137 1.79910 1.20289 0.79285 0.97063 0.94028 0.91327 1.21650 1.04165 0.94920 0.94123 1.22140 0.99468 0.84522 0.94184 1.86379 1.89032 1.32944 1.31426 1.22746 1.03005 0.95688 0.96651 1.22971 0.90581 1.02522 1.03473 1.23180 1.01674 0.99611 0.99834 0.91872 0.97236 0.97442 0.76207 0.75669 0.89526 0.88537 0.93734 0.93479 0.75332 0.85887 0.89410 0.86816 0.89178 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.96 21.45 0.30 -55.51 16 2 C 0.03 1.54 5.47 84.66 0.46 2.01 16 3 Si 0.94 44.31 27.47 68.60 1.88 46.19 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 7 C -0.54 -30.19 9.83 25.60 0.25 -29.94 16 8 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 9 C 0.25 12.54 4.50 85.63 0.38 12.92 16 10 N -0.72 -29.12 5.55 -482.31 -2.68 -31.80 16 11 C 0.70 26.06 7.90 179.06 1.41 27.47 16 12 O -0.63 -28.29 13.37 -3.99 -0.05 -28.35 16 13 N -0.73 -19.13 4.52 -457.81 -2.07 -21.20 16 14 C 0.20 4.54 2.27 44.99 0.10 4.64 16 15 H 0.07 1.90 7.33 -2.39 -0.02 1.88 16 16 C -0.11 -1.89 5.10 30.59 0.16 -1.73 16 17 C 0.07 1.33 6.93 71.98 0.50 1.83 16 18 O -0.59 -10.17 13.66 -148.98 -2.03 -12.20 16 19 C -0.16 -3.57 5.36 -10.79 -0.06 -3.63 16 20 C -0.16 -3.45 10.18 30.62 0.31 -3.14 16 21 C -0.21 -5.81 9.74 30.62 0.30 -5.52 16 22 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 23 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 24 H 0.01 0.39 7.57 -2.39 -0.02 0.38 16 25 H 0.40 14.23 8.34 -92.71 -0.77 13.46 16 26 H 0.41 8.46 8.62 -92.71 -0.80 7.67 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.87 7.75 -2.39 -0.02 0.85 16 31 H 0.40 3.61 9.12 -74.06 -0.68 2.93 16 32 H 0.12 2.21 8.11 -2.39 -0.02 2.19 16 33 H 0.09 2.02 8.05 -2.39 -0.02 2.00 16 34 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 3.23 5.02 -2.39 -0.01 3.22 16 Total: -1.00 -69.98 300.52 -2.02 -72.00 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -1.19 Total: 25.95 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 3.82 Total: 4.91 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.45 Total: -108.50 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -2.09 Total: -40.55 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -69.98 -2.02 -72.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.387 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds