Wall clock time and date at job start Sun Mar 29 2020 22:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.52640 * 2 1 4 4 C 1.34781 * 119.99511 * 60.12950 * 3 2 1 5 5 O 1.21584 * 119.99970 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99489 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47064 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46999 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46942 * 119.99666 * 12 10 8 15 15 H 1.48504 * 109.46979 * 239.99580 * 12 10 8 16 16 C 1.53184 * 109.56956 * 239.84837 * 2 1 3 17 17 C 1.53184 * 109.03399 * 183.08362 * 16 2 1 18 18 C 1.53088 * 109.16460 * 56.97728 * 17 16 2 19 19 O 1.42903 * 109.41586 * 302.39034 * 18 17 16 20 20 C 1.42905 * 114.09535 * 61.15920 * 19 18 17 21 21 H 1.08994 * 109.47543 * 59.99234 * 1 2 3 22 22 H 1.09001 * 109.47431 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47006 * 299.99658 * 1 2 3 24 24 H 0.97003 * 120.00113 * 240.13199 * 3 2 1 25 25 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 26 26 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 27 27 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 28 28 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 29 29 H 1.08997 * 109.53931 * 302.94441 * 16 2 1 30 30 H 1.09001 * 109.54408 * 63.21590 * 16 2 1 31 31 H 1.09006 * 109.52057 * 297.06924 * 17 16 2 32 32 H 1.09008 * 109.57066 * 176.91762 * 17 16 2 33 33 H 1.08997 * 109.47905 * 182.40368 * 18 17 16 34 34 H 1.09005 * 109.48809 * 62.38149 * 18 17 16 35 35 H 1.09006 * 109.47785 * 178.85660 * 20 19 18 36 36 H 1.09000 * 109.48168 * 58.82920 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3808 0.0000 4 6 1.6969 2.2102 1.0122 5 8 0.9990 1.8125 1.9250 6 7 2.1469 3.4805 1.0120 7 6 1.7966 4.3819 2.1125 8 6 2.4210 5.7325 1.8737 9 1 3.0192 5.9023 0.9908 10 6 2.2293 6.7511 2.7830 11 7 1.5012 6.5441 3.8585 12 14 3.0026 8.4255 2.4866 13 1 3.7674 8.3992 1.2140 14 1 1.9361 9.4554 2.4026 15 1 3.9195 8.7527 3.6080 16 6 2.0430 -0.7250 -1.2481 17 6 3.5728 -0.7855 -1.1972 18 6 4.0055 -1.4794 0.0970 19 8 3.4695 -0.7724 1.2172 20 6 2.0416 -0.7243 1.2479 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.5760 1.6981 -0.7285 25 1 2.7033 3.7979 0.2836 26 1 0.7129 4.4864 2.1656 27 1 2.1684 3.9710 3.0511 28 1 1.3666 7.2606 4.4984 29 1 1.6388 -1.7369 -1.2739 30 1 1.7290 -0.1825 -2.1398 31 1 3.9783 0.2260 -1.2214 32 1 3.9447 -1.3476 -2.0539 33 1 5.0937 -1.4873 0.1589 34 1 3.6338 -2.5041 0.1020 35 1 1.7150 -0.1881 2.1390 36 1 1.6440 -1.7390 1.2680 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:00 Heat of formation + Delta-G solvation = -86.706927 kcal Electronic energy + Delta-G solvation = -18167.582715 eV Core-core repulsion = 15265.456989 eV Total energy + Delta-G solvation = -2902.125726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32257 -38.29031 -35.26691 -33.99789 -32.49565 -32.31031 -30.71712 -26.91846 -26.82289 -25.11692 -22.92942 -22.11401 -20.45341 -19.27813 -18.01903 -16.60096 -16.04771 -15.86203 -15.23041 -14.90389 -14.58590 -14.28337 -14.11626 -13.80460 -13.03135 -12.79794 -12.67143 -12.30457 -12.01833 -11.91574 -11.82261 -11.58979 -11.21223 -10.88317 -10.87015 -10.71800 -10.44800 -10.23504 -9.57449 -9.29874 -9.09260 -8.67683 -8.50553 -7.66727 -6.10909 -4.16860 3.27058 3.32741 3.36014 3.43527 4.00582 4.05043 4.36870 4.56028 4.69046 4.76095 4.91754 5.12690 5.23563 5.25353 5.37292 5.50296 5.52874 5.61379 5.70038 5.79689 5.83823 6.01363 6.05228 6.28292 6.51686 6.99996 7.19607 7.34918 7.59902 7.63519 7.64969 7.97964 8.11693 8.83264 9.03640 9.41445 9.56138 10.99467 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040048 B = 0.005126 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.995419 B = 5460.612691 C = 5639.876514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 N -0.741 5.741 4 C 0.699 3.301 5 O -0.600 6.600 6 N -0.730 5.730 7 C 0.268 3.732 8 C -0.540 4.540 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.282 1.282 16 C -0.124 4.124 17 C -0.156 4.156 18 C 0.057 3.943 19 O -0.372 6.372 20 C 0.049 3.951 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.389 0.611 25 H 0.385 0.615 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.264 0.736 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.121 0.879 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -15.128 -11.788 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.078 3.922 3 N -0.398 5.398 4 C 0.400 3.600 5 O -0.481 6.481 6 N -0.382 5.382 7 C 0.147 3.853 8 C -0.578 4.578 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.162 4.162 17 C -0.194 4.194 18 C -0.020 4.020 19 O -0.290 6.290 20 C -0.029 4.029 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.106 0.894 24 H 0.222 0.778 25 H 0.217 0.783 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.139 0.861 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.042 -15.274 -10.591 18.698 hybrid contribution 0.745 1.124 -1.079 1.727 sum 2.786 -14.149 -11.670 18.552 Atomic orbital electron populations 1.22193 0.94010 1.01758 1.04247 1.20605 0.94366 0.81806 0.95418 1.45123 1.57682 1.11066 1.25959 1.16078 0.80553 0.81283 0.82134 1.90770 1.43606 1.76229 1.37454 1.45710 1.54497 1.09988 1.27997 1.18953 0.96210 0.86271 0.83914 1.21278 1.32860 0.95684 1.07990 0.91988 1.24941 0.95134 0.99145 0.94824 1.69991 1.38269 1.33188 1.10915 0.86372 0.78977 0.83385 0.78212 1.19709 1.20853 1.20830 1.21890 0.95728 1.01035 0.97515 1.22199 0.96094 1.02401 0.98704 1.22553 0.99038 0.94344 0.86114 1.88044 1.20549 1.75956 1.44413 1.23212 0.80526 0.98893 1.00270 0.92566 0.92457 0.89421 0.77754 0.78340 0.95827 0.95765 0.92577 0.90465 0.90855 0.90880 0.90940 0.89241 0.93606 0.86132 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.42 37.15 0.31 -1.89 16 2 C 0.17 2.22 0.68 -131.68 -0.09 2.13 16 3 N -0.74 -11.49 4.74 -52.29 -0.25 -11.74 16 4 C 0.70 14.57 7.98 -86.92 -0.69 13.87 16 5 O -0.60 -14.52 12.55 5.29 0.07 -14.45 16 6 N -0.73 -16.06 5.55 -66.41 -0.37 -16.43 16 7 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 8 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 9 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 12 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C -0.12 -1.19 4.86 -26.54 -0.13 -1.32 16 17 C -0.16 -1.44 5.95 -26.59 -0.16 -1.60 16 18 C 0.06 0.61 6.84 37.20 0.25 0.86 16 19 O -0.37 -5.68 10.67 -35.23 -0.38 -6.05 16 20 C 0.05 0.72 5.40 37.20 0.20 0.92 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 1.50 6.18 -51.93 -0.32 1.17 16 24 H 0.39 5.07 7.54 -40.82 -0.31 4.76 16 25 H 0.38 7.35 8.33 -40.82 -0.34 7.01 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.73 7.11 -51.93 -0.37 0.36 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 2.23 6.11 -51.93 -0.32 1.92 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -32.70 290.56 -7.00 -39.70 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.42 Total: 7.59 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.75 Total: 6.65 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.12 Total: -53.97 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.31 Total: -20.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.70 -7.00 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.010 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds