Wall clock time and date at job start Sun Mar 29 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.52640 * 2 1 4 4 C 1.34781 * 119.99511 * 60.12950 * 3 2 1 5 5 O 1.21584 * 119.99970 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99489 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47064 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00094 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46999 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46942 * 119.99666 * 12 10 8 15 15 H 1.48504 * 109.46979 * 239.99580 * 12 10 8 16 16 C 1.53184 * 109.56956 * 239.84837 * 2 1 3 17 17 C 1.53184 * 109.03399 * 183.08362 * 16 2 1 18 18 C 1.53088 * 109.16460 * 56.97728 * 17 16 2 19 19 O 1.42903 * 109.41586 * 302.39034 * 18 17 16 20 20 C 1.42905 * 114.09535 * 61.15920 * 19 18 17 21 21 H 1.08994 * 109.47543 * 59.99234 * 1 2 3 22 22 H 1.09001 * 109.47431 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47006 * 299.99658 * 1 2 3 24 24 H 0.97003 * 120.00113 * 240.13199 * 3 2 1 25 25 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 26 26 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 27 27 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 28 28 H 0.97000 * 120.00333 * 179.97438 * 11 10 8 29 29 H 1.08997 * 109.53931 * 302.94441 * 16 2 1 30 30 H 1.09001 * 109.54408 * 63.21590 * 16 2 1 31 31 H 1.09006 * 109.52057 * 297.06924 * 17 16 2 32 32 H 1.09008 * 109.57066 * 176.91762 * 17 16 2 33 33 H 1.08997 * 109.47905 * 182.40368 * 18 17 16 34 34 H 1.09005 * 109.48809 * 62.38149 * 18 17 16 35 35 H 1.09006 * 109.47785 * 178.85660 * 20 19 18 36 36 H 1.09000 * 109.48168 * 58.82920 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3808 0.0000 4 6 1.6969 2.2102 1.0122 5 8 0.9990 1.8125 1.9250 6 7 2.1469 3.4805 1.0120 7 6 1.7966 4.3819 2.1125 8 6 2.4210 5.7325 1.8737 9 1 3.0192 5.9023 0.9908 10 6 2.2293 6.7511 2.7830 11 7 1.5012 6.5441 3.8585 12 14 3.0026 8.4255 2.4866 13 1 3.7674 8.3992 1.2140 14 1 1.9361 9.4554 2.4026 15 1 3.9195 8.7527 3.6080 16 6 2.0430 -0.7250 -1.2481 17 6 3.5728 -0.7855 -1.1972 18 6 4.0055 -1.4794 0.0970 19 8 3.4695 -0.7724 1.2172 20 6 2.0416 -0.7243 1.2479 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.5760 1.6981 -0.7285 25 1 2.7033 3.7979 0.2836 26 1 0.7129 4.4864 2.1656 27 1 2.1684 3.9710 3.0511 28 1 1.3666 7.2606 4.4984 29 1 1.6388 -1.7369 -1.2739 30 1 1.7290 -0.1825 -2.1398 31 1 3.9783 0.2260 -1.2214 32 1 3.9447 -1.3476 -2.0539 33 1 5.0937 -1.4873 0.1589 34 1 3.6338 -2.5041 0.1020 35 1 1.7150 -0.1881 2.1390 36 1 1.6440 -1.7390 1.2680 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:59 Heat of formation + Delta-G solvation = -112.470451 kcal Electronic energy + Delta-G solvation = -18168.699905 eV Core-core repulsion = 15265.456989 eV Total energy + Delta-G solvation = -2903.242916 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60432 -39.71438 -36.60136 -35.87494 -34.41070 -33.39494 -32.08978 -28.95350 -27.85493 -26.09435 -24.86298 -23.19237 -22.00575 -20.55369 -19.71597 -18.12302 -17.60954 -16.95267 -16.80439 -16.41141 -16.13733 -15.55581 -15.44786 -15.15741 -14.61196 -14.11968 -14.00039 -13.79405 -13.55647 -13.30853 -12.91087 -12.86414 -12.76227 -12.68402 -12.20853 -12.05176 -11.73760 -11.42982 -11.40523 -10.79525 -10.76902 -10.61679 -10.00042 -9.48503 -8.27602 -6.43886 1.43322 1.45226 1.58394 1.94787 2.35369 2.40419 3.02355 3.07361 3.50872 3.70146 3.87072 3.89461 4.05367 4.34794 4.43817 4.52361 4.73600 4.77316 4.82243 4.88380 4.95486 5.04734 5.08515 5.19775 5.29673 5.30081 5.37452 5.51470 5.72201 5.75579 5.88330 6.30689 6.37406 6.68729 7.26011 7.38658 7.83010 8.85148 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040048 B = 0.005126 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.995419 B = 5460.612691 C = 5639.876514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 N -0.720 5.720 4 C 0.695 3.305 5 O -0.638 6.638 6 N -0.728 5.728 7 C 0.288 3.712 8 C -0.554 4.554 9 H 0.082 0.918 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.987 3.013 13 H -0.254 1.254 14 H -0.278 1.278 15 H -0.279 1.279 16 C -0.114 4.114 17 C -0.152 4.152 18 C 0.046 3.954 19 O -0.406 6.406 20 C 0.050 3.950 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.042 0.958 24 H 0.405 0.595 25 H 0.401 0.599 26 H -0.015 1.015 27 H -0.019 1.019 28 H 0.269 0.731 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -15.677 -14.801 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.071 3.929 3 N -0.376 5.376 4 C 0.395 3.605 5 O -0.521 6.521 6 N -0.381 5.381 7 C 0.165 3.835 8 C -0.592 4.592 9 H 0.100 0.900 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.810 3.190 13 H -0.177 1.177 14 H -0.203 1.203 15 H -0.205 1.205 16 C -0.152 4.152 17 C -0.190 4.190 18 C -0.030 4.030 19 O -0.325 6.325 20 C -0.028 4.028 21 H 0.083 0.917 22 H 0.106 0.894 23 H 0.061 0.939 24 H 0.241 0.759 25 H 0.236 0.764 26 H 0.003 0.997 27 H -0.001 1.001 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.423 -15.872 -13.682 21.233 hybrid contribution 0.319 1.156 -0.123 1.206 sum 3.742 -14.715 -13.806 20.522 Atomic orbital electron populations 1.22135 0.94090 1.03204 1.02388 1.20924 0.94400 0.80388 0.97138 1.44983 1.56786 1.11374 1.24503 1.16291 0.80160 0.81256 0.82818 1.90763 1.45132 1.76842 1.39329 1.45330 1.55286 1.10166 1.27367 1.18347 0.93641 0.87523 0.83996 1.21636 1.33067 0.95643 1.08816 0.90019 1.26074 0.95371 1.03964 0.94208 1.70154 1.39787 1.34922 1.12173 0.85084 0.77994 0.77149 0.78789 1.17719 1.20318 1.20451 1.21899 0.95992 1.01871 0.95429 1.22199 0.95661 1.02193 0.98926 1.22865 0.99556 0.95116 0.85452 1.87991 1.20489 1.77086 1.46926 1.23034 0.80961 0.99814 0.98971 0.91673 0.89424 0.93870 0.75931 0.76426 0.99697 1.00068 0.92258 0.87965 0.89127 0.91914 0.87657 0.88354 0.91619 0.91036 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 8.42 71.98 0.61 -3.55 16 2 C 0.16 4.01 0.68 3.69 0.00 4.01 16 3 N -0.72 -21.92 4.74 -437.60 -2.08 -23.99 16 4 C 0.69 29.99 7.98 179.05 1.43 31.42 16 5 O -0.64 -32.95 12.55 -3.98 -0.05 -33.00 16 6 N -0.73 -32.99 5.55 -482.29 -2.68 -35.67 16 7 C 0.29 16.58 5.43 85.63 0.46 17.05 16 8 C -0.55 -31.13 9.28 25.60 0.24 -30.89 16 9 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 10 C 0.00 0.18 5.46 84.65 0.46 0.64 16 11 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 12 Si 0.99 43.25 29.54 68.60 2.03 45.27 16 13 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 14 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 16 C -0.11 -1.73 4.86 30.72 0.15 -1.58 16 17 C -0.15 -2.20 5.95 30.69 0.18 -2.02 16 18 C 0.05 0.86 6.84 72.01 0.49 1.35 16 19 O -0.41 -12.17 10.67 -148.98 -1.59 -13.76 16 20 C 0.05 1.47 5.40 72.01 0.39 1.86 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.04 1.52 6.18 -2.38 -0.01 1.51 16 24 H 0.40 9.82 7.54 -92.71 -0.70 9.12 16 25 H 0.40 15.24 8.33 -92.71 -0.77 14.47 16 26 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.05 7.11 -2.38 -0.02 1.03 16 32 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.07 2.83 6.11 -2.38 -0.01 2.82 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -75.92 290.56 -0.05 -75.97 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.38 Total: 24.12 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 4.42 Total: 18.30 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -4.47 Total: -116.90 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.64 Total: -46.76 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -75.92 -0.05 -75.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.497 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds